mRNA_S-dermatodea_contig10242.177.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10242.177.1
Unique NamemRNA_S-dermatodea_contig10242.177.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10242.177.1 vs. uniprot
Match: A0A6H5JP20_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP20_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.050e-25
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    4 TAPRLATCKCLGEPGGGGCEVLVVTGHMFELLTDVFNGVRLKLLGQTEDRLTQLAGSVLRNAFDGEESSMMGLDVIWGE--KETTCVWNSVKP 276
            + PRLATC C+G+P GGGCEV++VT HMF+LLTD F GVR  L  Q E RLTQLA +VL   F GEE++    DV+WG+  KET   W  V P
Sbjct:  790 STPRLATCTCVGQPSGGGCEVMMVTEHMFDLLTDTFEGVRTSLDLQREVRLTQLAEAVLSKVFQGEEATFGKEDVVWGQDGKETAGEWKKVVP 882
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BLAST of mRNA_S-dermatodea_contig10242.177.1 vs. uniprot
Match: D7G274_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G274_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.640e-25
Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    4 TAPRLATCKCLGEPGGGGCEVLVVTGHMFELLTDVFNGVRLKLLGQTEDRLTQLAGSVLRNAFDGEESSMMGLDVIWGE--KETTCVWNSVKP 276
            + PRLATC C+G+P GG CEVLVVT HMF+LLTD F GVR  L  Q E RLTQLA +VL   F GEE++    DV+WG+  KET   W  V P
Sbjct:  608 STPRLATCTCVGQPSGGDCEVLVVTEHMFDLLTDTFQGVRAGLDLQREVRLTQLAEAVLSKVFQGEEATFGEEDVVWGQDGKETAGEWKKVVP 700
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10242.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP20_9PHAE1.050e-2556.99cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
D7G274_ECTSI3.640e-2558.06cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10242contigS-dermatodea_contig10242:487..3226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue8.2e-21
Seed eggNOG ortholog2880.D7G274
KEGG koko:K08794,ko:K08804
KEGG Pathwayko04921,ko04925,map04921,map04925
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.2771258-CDS-S-dermatodea_contig10242:486..6271622924147.2771258-CDS-S-dermatodea_contig10242:486..627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10242 487..627 +
1694079049.9719944-CDS-S-dermatodea_contig10242:486..6271694079049.9719944-CDS-S-dermatodea_contig10242:486..627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10242 487..627 +
1622924147.2869632-CDS-S-dermatodea_contig10242:3073..32261622924147.2869632-CDS-S-dermatodea_contig10242:3073..3226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10242 3074..3226 +
1694079049.9817889-CDS-S-dermatodea_contig10242:3073..32261694079049.9817889-CDS-S-dermatodea_contig10242:3073..3226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10242 3074..3226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10242.177.1prot_S-dermatodea_contig10242.177.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10242 487..3226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10242.177.1

>prot_S-dermatodea_contig10242.177.1 ID=prot_S-dermatodea_contig10242.177.1|Name=mRNA_S-dermatodea_contig10242.177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
STAPRLATCKCLGEPGGGGCEVLVVTGHMFELLTDVFNGVRLKLLGQTED
RLTQLAGSVLRNAFDGEESSMMGLDVIWGEKETTCVWNSVKPSRRRTR
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mRNA from alignment at S-dermatodea_contig10242:487..3226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10242.177.1 ID=mRNA_S-dermatodea_contig10242.177.1|Name=mRNA_S-dermatodea_contig10242.177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2740bp|location=Sequence derived from alignment at S-dermatodea_contig10242:487..3226+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAACAGCGCCTCGCCTGGCGACGTGCAAGTGCCTGGGGGAGCCCGGGGG
GGGCGGGTGCGAGGTGCTGGTGGTGACAGGCCACATGTTCGAGCTGTTGA
CGGACGTGTTTAACGGAGTGCGGCTGAAGCTCCTAGGCCAGGTGCGCGAT
TGCGATTGTGATTAGGGATGTGATGTGTGTGCATGTGGTGTGTGTGCGAG
TGGGTGGGTGGGTGGGTGGGTGGGCGCGCGCCGCGTATAGTATCGTATCG
TATCGTAATCTTGATCGTGATCATGATCTTGACCGTGATAGTGATCATGA
TAGTGATCGTGATCGTGATTGTGATCGTGATCGTGATTGTGATCGCGCGA
TGATGGGTTAATTAGGTGATTGGCTGGTTGGGTCAGTTGGTGGCTCGGGG
TGATTTGATTGATTGAGTTGTTTGATTGGTTCATTTGAGAGTTGTTTCGT
GTGATTGGTTGGTTGACTGGCTGATGGAATGATTGATTGGGTGATTGATC
GGTTCGTTAAACCTCGAGACCCTGACCCCTTGAGGGATTTGACTCCGGGA
ATGACTCCTTTTTTAGCCCGAAATGGCCACCATGGTTACATCGCGGTGAC
ATGCATACAAGCGCGCCGCCGCCGCCACCACTGGCGTGCATGAGAGCTGA
GCCGTGGCAGGGTTGTCATAACTTTTACACGGCGACCCTATCTTAAGTAT
TTTGCCATCAGGCAAAGATGCAGGTGCAGGACTTAAGCGTAACGTGCTGG
TTACGTAACGATTAAGCAGAAACGCGATGTATGTATGATGCGGTAAGGCG
AGCAGTACCCGCCGCCGCCCTCCAGACCAAGGAGAGACAAACCCCGAGGT
GCTCAAAATATGCATTTTTTTCTCTCATGCGAGGGGTTCTTATGGGCGTC
GTATTATATTTTGGAACGTGGGTTTTGGAAGAGTATTGCACTTTGTTTTT
GGTCGTCTGTCGCCTATGTTGGGAATTGTGATGAGCGTCGTGACCACCTA
TATTCAGTGAGTGAGTCAGTGAGGGAGTCAAGTTAGTGTGGGGGTACTGT
ACCCCTGGAGTTATTACGGAGGTACACTATAATCAAGTAATCAGGACCAA
ATATCACGACCATGACTACCCAAGTATTCCGACCATGAATACCATACCAT
ACCATACCATACCATACCATACCATACCATACCCAAACACCAACAAAAGC
TATCTCGAAGAAAAAAAGCACGAGGTCTGGCGTTCGTTGTACAACGACAT
CGACCTTGAAAATGTCGATAATTCCAGCCTATTTTGTTTTTTCTAAATTG
AGACTCGTGGCAAATTTGGTCTGGCGTTTTACAACGACATCGACCATGAA
AATGTCGATAATTCCAGCCTATTTTTTTTTTTTTCTAAATTGAGACTTGT
GGCAAAATTGGACCTGTTAACTGTGTTCCTCCGGAATAGTTGTACTACTG
TAGAACACCTGTTTCAAAGGGGGAGACACCACGGTGGAGTGGACGGCATC
GATGCTTTCCGTGCTAAACGTAGAAAAGGTTTGGAAAAAGTACCTATCTA
TACTCTCATCTTGAGTGGTAGGGAACTGAAGAAGGATCATGGAAAGAGCG
CAGGGAGCAGCAGTGGCAGCAGCAGCAGCAGAGGCTCACCGGGCGCCACC
CAATGAGCAGCAAGATTTATTTTATCGTCCGCGAAGGGAAGAAACGCGTA
CAGTACGCCTAGACCAATCTAAACCACCTCCTCCTCGCGGGACGCCTTGC
GTCGTGGGAGGTGTCTTCGCGAGTGTGGCGTCGGCCAAGGCCCCACTGCC
TTGTCGTGCATCATATACAGTACTCAACGGCACCCATCAGGAAGAGAAGA
TAGATAATCTGGTTGCCTGAGGCATCTCCTTACACTTATTTCGGGCTCTG
CTCACACACTGCAACCCACCACACTATTATATAATAACAATTTTGTTAAT
TCATTAATTAATAACAGCGCTTTTGCGCGTTTTTTTTGTTTAGAAGTTAG
CGTGGAGCCTTGATGCCAAACCGATAGGGCTTACAGAGTACCGTTAGTAT
TGTGAAGCTTTTTTCGGATGATTCGCCGGTTCTATCATACCGTTTCTTCG
CCACATCTCACGGGCGTAGCCGTGGCTACCCACTTCGATTATTTTTTATT
GGTGATTTAGCCGATCGGCTTAGTCCGACCCGACTTTTGGTCAGACACGC
AAAGAGTCAAGGAGAAAAATAACTAATCATAACTCTACTTGTACTATACA
CCGTACCGTCCCTGGTACTTACGTACTCAAGGTACAAGAAATAATAAATA
TTTAGTACCCCAGATATGGAAACACGCTAGAAGAGAACTCTTGCTCAGAC
AGTGCTTCCTCGCCTCTCCACAGGCCCTTGTTTTACTACGGCCAGCTGCA
ACGCGGCAGGGACATCAGTAGAAGAGTTAGAGCAGATGAAAAATAGAAAA
ATACCAGGCAATAGAGAGAAGAAGGAAGGAAAAGAAGACAGAAAAACAGA
AAAACAGACCCACTACAGTAGTAACAATGAAACAACAAAATCACCCCATC
CTTCTCCGTCCGCACACCCTCCTCCCGCCTACCGCAGACGGAGGACCGAC
TGACTCAGCTGGCGGGATCCGTCCTCCGAAACGCGTTCGATGGAGAGGAG
TCGTCGATGATGGGGCTGGACGTCATCTGGGGCGAGAAGGAGACCACCTG
CGTGTGGAACAGCGTAAAGCCTTCCAGGCGGAGAACCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10242:487..3226+

>mRNA_S-dermatodea_contig10242.177.1 ID=mRNA_S-dermatodea_contig10242.177.1|Name=mRNA_S-dermatodea_contig10242.177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig10242:487..3226+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAACAGCGCCTCGCCTGGCGACGTGCAAGTGCCTGGGGGAGCCCGGGGG
GGGCGGGTGCGAGGTGCTGGTGGTGACAGGCCACATGTTCGAGCTGTTGA
CGGACGTGTTTAACGGAGTGCGGCTGAAGCTCCTAGGCCAGTCAACAGCG
CCTCGCCTGGCGACGTGCAAGTGCCTGGGGGAGCCCGGGGGGGGCGGGTG
CGAGGTGCTGGTGGTGACAGGCCACATGTTCGAGCTGTTGACGGACGTGT
TTAACGGAGTGCGGCTGAAGCTCCTAGGCCAGACGGAGGACCGACTGACT
CAGCTGGCGGGATCCGTCCTCCGAAACGCGTTCGATGGAGAGGAGTCGTC
GATGATGGGGCTGGACGTCATCTGGGGCGAGAAGGAGACCACCTGCGTGT
GGAACAGCGTAAAGCCTTCCAGGCGGAGAACCAGGACGGAGGACCGACTG
ACTCAGCTGGCGGGATCCGTCCTCCGAAACGCGTTCGATGGAGAGGAGTC
GTCGATGATGGGGCTGGACGTCATCTGGGGCGAGAAGGAGACCACCTGCG
TGTGGAACAGCGTAAAGCCTTCCAGGCGGAGAACCAGG
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