mRNA_S-dermatodea_contig1024.176.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1024.176.1
Unique NamemRNA_S-dermatodea_contig1024.176.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1024.176.1 vs. uniprot
Match: A0A7S2XXS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.090e-10
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   55 MKVRELGTILEALEPVPGLDPEAFFSVLRGPSGKARKHDVDYRDVKIVQLAKRSRATSARLEGERARCQKAHREIDILAKEL 300
            ++V+ L  +LEA+EP+PGLDP+ F  V++G        D DYRD KIVQLAK++R        ++AR  K  +++D    EL
Sbjct:  116 LEVKRLDALLEAVEPIPGLDPDKFLDVMKG----TEVVDQDYRDAKIVQLAKKARNLRVSRNAQQARADKLQKQVDQALSEL 193
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BLAST of mRNA_S-dermatodea_contig1024.176.1 vs. uniprot
Match: A0A7S2ST90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST90_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.560e-7
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   49 RTMKVRELGTILEALEPVPGLDPEAFFSVLRGPSGKARKHDVDYRDVKIVQLAKRSRATSARLEGERARCQKAHREIDILAKELE 303
            R ++V++LG +LEALEPVPG+D E    +L G        + D RDVKIVQLAK+SR  +  LE  + + Q   ++ +  AK+ E
Sbjct:   30 RRLQVKKLGVMLEALEPVPGVDAERLLDLLEGQDVA----EADPRDVKIVQLAKKSR--NLMLENNKLKSQLRAQQTEAAAKDRE 108
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1024.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2XXS0_9STRA4.090e-1041.46Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2ST90_9STRA5.560e-742.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1024contigS-dermatodea_contig1024:13456..16360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000930.1
Hectar predicted targeting categoryother localisation
Exons3
Model size316
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1024.176.1prot_S-dermatodea_contig1024.176.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1024 13456..16348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.2180245-CDS-S-dermatodea_contig1024:13455..135161622924147.2180245-CDS-S-dermatodea_contig1024:13455..13516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 13456..13516 -
1694079049.926233-CDS-S-dermatodea_contig1024:13455..135161694079049.926233-CDS-S-dermatodea_contig1024:13455..13516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 13456..13516 -
1622924147.2275693-CDS-S-dermatodea_contig1024:14267..144611622924147.2275693-CDS-S-dermatodea_contig1024:14267..14461Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 14268..14461 -
1694079049.9362652-CDS-S-dermatodea_contig1024:14267..144611694079049.9362652-CDS-S-dermatodea_contig1024:14267..14461Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 14268..14461 -
1622924147.2356918-CDS-S-dermatodea_contig1024:16300..163481622924147.2356918-CDS-S-dermatodea_contig1024:16300..16348Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 16301..16348 -
1694079049.951541-CDS-S-dermatodea_contig1024:16300..163481694079049.951541-CDS-S-dermatodea_contig1024:16300..16348Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 16301..16348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.2470748-UTR-S-dermatodea_contig1024:16348..163601622924147.2470748-UTR-S-dermatodea_contig1024:16348..16360Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1024 16349..16360 -
1694079049.9610407-UTR-S-dermatodea_contig1024:16348..163601694079049.9610407-UTR-S-dermatodea_contig1024:16348..16360Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1024 16349..16360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1024.176.1

>prot_S-dermatodea_contig1024.176.1 ID=prot_S-dermatodea_contig1024.176.1|Name=mRNA_S-dermatodea_contig1024.176.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MTLTGKTRNRVTRTMKVRELGTILEALEPVPGLDPEAFFSVLRGPSGKAR
KHDVDYRDVKIVQLAKRSRATSARLEGERARCQKAHREIDILAKELEACR
R
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mRNA from alignment at S-dermatodea_contig1024:13456..16360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1024.176.1 ID=mRNA_S-dermatodea_contig1024.176.1|Name=mRNA_S-dermatodea_contig1024.176.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2905bp|location=Sequence derived from alignment at S-dermatodea_contig1024:13456..16360- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTACGGAGTGGATGACGTTGACTGGCAAGACTCGGAATCGGGTGACTCG
GACTATGAAGGTGGGCTGCAGATATGAGGGCTCGTCGTAGGGTGTCAATA
ATGCCTCAACGTATTTTTTGCATGTGGGAGACACGATTCACCCAGCACCA
GTGCCACAGTTTAAAAATAAATACAGTACTACTCGTCATGCCCCCAGTCC
ACAACCGAGAGGCACCCCGAGCAGGGCACAACACTGTGTATCGCTTGAGA
TTGATGGTGAAACAAATGTAATGGGAGACAATAGGCAATCGGTTACTTTT
AGATAAACATACCGGGGGGGGGCGCTCACAACAAACGTGGCCGTAAGAAA
GTCAGGTTGCAACCTTCGAAAATTCAGGAACGTTTACTCACGGTCCATAC
AGCATATTACACCCTGCCTTACCGCTGGTCGTCTGCAGACATGGCCTGGG
AAGAAAACTCGGCAATGATATCCCGTTTTTTCGCGTCTTCGGTGAACTCA
GTATTCGTTATGACTGACAACTCCCCCCGTCGAAGCGCTGCCTTGTCGAT
AGACGCTTCGACCTTGCTCACCAGAAAGGAGGCACGGGATTATAAATTGA
GTGAGGACGGGAAAATATGTGATTTTCTGGCAAAATCAAGGCGTCGTTTG
AAAAGGGATATTTCCTTGATCTAGCGCAATATTAAACTAAAGCCGAACCT
GGTTTTTAGTTTATGTTGAGATGGCCGATACTGCAACATGAAACGCGTCT
AGGCTACGAAGGGGTTGTTTAGGCGTGCTTCGCCAAGTACTATTTTGCCC
AGCGCTCATTTAGTAAGCAAATATAACCTTCAAAAGGGCAGCCTGTACAT
ACATGGCGCACAGGCCTGCAGAAACTATAATCGGAGGCAAGCTACCTCGG
TAAGCTATAACCGTGGCTTGCTCTTGGGCGAATGTACATGCTCGCTGACG
CAGATAAAAGCGAGCCGCGCCGCCGCCAATCCCCAGTCGTAGAGCCAAGG
ACGAGCAGCGCCTCTCGTGACCCGGCCGGCAACGTAACCGAATGTAGTCC
GGACATGGACGATACCTCTGGATGCTATCGCGCGGACGAGGGGGGTAGAA
ACGCCATGAGGCCAGCTGTGGAAGAACTACAGAGCCGCAATGCTATCCTT
CTCGAAGCAGTCGAGAAGAAAAGCCGACAGGTACAGCAGGATACGCTCGT
TGCGGATGCAAATTTGACCGTGATTTGTGTCCAGGGCCATGCCGTCCTTT
CACACAGCTCACGAAGGTCGGATGATACATGGTTGGAATATGAGTTGATC
AACACCACCAAAAACGCTCCGATTATCTCAGTCAAAACGGGCGGGGGGGG
GCTACTGTTTGCTTAACACCCCCATTCTGATATAATTAAGTTAAGGAATG
CAAGCGTTCCGAACCGCAGAAGTTAGGTGTGTGCCGCATTCGACCCTCTC
CTACTGTTTGCTTAACACCCCCATTCTGATATAATTAAGTTAAGGAATGC
AGGCGTTCCGAACCGCAGAAGTTAGGTGTGTGCCGCATTCGACCCTCTCC
TCTTCTATGGAGCACGAACCCTAAGTATAGCAGAGCAGGATGAGCTCAAG
TGCGCGGCATTCGCTTTGTGCATGTGGCGTGCGACGAGAGGCTTCGCACC
AGCTCACGTTGGAGCACGTGCAGTTAGATCCGCATCCCTTTGGGAGGGCA
TACGATGGTAAAAGGGACTTCGTTTGGACCTAGTGACCACGGCACGTTGA
GCTGCGGTACACCAATGGCGCTTCCGGTGGAGTCAGATCACGCCAGGCTT
TCGTTTAAGATAAGCCACAAAGCGAATACTGACGTACATAGCAGGAGCGC
TTGCTTCTTCAAGCTCTAATTACATCCACGACTGATCTTGACGCTGCAGG
TGCGAGAGCTAGGAACCATCCTTGAGGCTTTAGAGCCAGTCCCGGGTCTA
GATCCTGAGGCGTTTTTCTCGGTGCTCCGGGGTCCGAGCGGAAAGGCGCG
GAAACACGACGTGGATTACCGCGATGTTAAGATCGTCCAATTGGCGAAAC
GTAGCAGAGCAACATCTGCGAGGCTGGAAGGTGAAAGAGCCCGGTGAGAA
CGATGATACTGTAGTAAAATATGGTGTGATTTACACCTCGTATTCCGTTG
ACTCAATACGTGGACTGCTGTGCTAAGAAAGAGTAGTTAGTTTTGCCCGT
TTGGATGTTGACGAAGGACCGCAAAAAATCACCTGGTTGGCGTGAATATG
GTTGCCTGGCATTCGTTTCCCCTAAGGTGCAGGGGGGGAGGGCGGAGTAC
ATGGTTGTGATGTACGAATCCGGCAAGGATGATTGGCGGATGTCCTTGAA
CCTCACACGGAAAAAATGTGGCGCAGAAAATATCGTTTCTATTATTTGTC
GGCGTAAGCATAATCATACTACCCATCATTGTCGGGCCATCGATACACTG
TATCACGTCAAGGGTTCACCAAAATAAAAAACCGACCCGGATTTCCGGTA
TGGGACCACTACTTGTATCATATACGGGAATGATCTAGAGTTGGAAATTG
ACTATTCTTCAACAGGATGTTCAATGTGTATTTTAAATATGTAAACCCAA
CAAAAATCTCTCGAATGCACACCCGTACCTCCCGCTTTGGGGTTAGGGTT
GGGGTTTGTGTAGTGGAAATCTGCAACAGACTACAATCCGTAAAACGGAC
GTTAGGTGATGGATTCCGCCATGGTCAATTTGTGCGGAAACATCTGGGGC
TGTGCTCTGCTATCTTAGAACTCCAGTAGATTCGTCATGAACAGACCACG
GCCCACTACCGTGTGCGATGGTGCCGTTTCCTGCGCCGTTGTAGCTGCCA
AAAGGCGCATCGAGAGATAGACATACTTGCCAAAGAGCTGGAGGCGTGCC
GACGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1024:13456..16360-

>mRNA_S-dermatodea_contig1024.176.1 ID=mRNA_S-dermatodea_contig1024.176.1|Name=mRNA_S-dermatodea_contig1024.176.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig1024:13456..16360- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTTGACTGGCAAGACTCGGAATCGGGTGACTCGGACTATGAAGAT
GACGTTGACTGGCAAGACTCGGAATCGGGTGACTCGGACTATGAAGGTGC
GAGAGCTAGGAACCATCCTTGAGGCTTTAGAGCCAGTCCCGGGTCTAGAT
CCTGAGGCGTTTTTCTCGGTGCTCCGGGGTCCGAGCGGAAAGGCGCGGAA
ACACGACGTGGATTACCGCGATGTTAAGATCGTCCAATTGGCGAAACGTA
GCAGAGCAACATCTGCGAGGCTGGAAGGTGAAAGAGCCCGGTGCGAGAGC
TAGGAACCATCCTTGAGGCTTTAGAGCCAGTCCCGGGTCTAGATCCTGAG
GCGTTTTTCTCGGTGCTCCGGGGTCCGAGCGGAAAGGCGCGGAAACACGA
CGTGGATTACCGCGATGTTAAGATCGTCCAATTGGCGAAACGTAGCAGAG
CAACATCTGCGAGGCTGGAAGGTGAAAGAGCCCGCTGCCAAAAGGCGCAT
CGAGAGATAGACATACTTGCCAAAGAGCTGGAGGCGTGCCGACGGCTGCC
AAAAGGCGCATCGAGAGATAGACATACTTGCCAAAGAGCTGGAGGCGTGC
CGACGG
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