mRNA_S-dermatodea_contig1024.175.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1024.175.1
Unique NamemRNA_S-dermatodea_contig1024.175.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1024.175.1 vs. uniprot
Match: D7FPQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.720e-18
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   91 RQQTVLLRNKLQEAQEEAKKAHRALSKEIGGNGDGLDRALNEDPGWKGRGQQIVMLKARVKQLE 282
            +QQ VLLRNKL EAQEE KK +RALSKE+GG   GL R LN+  GWKGR QQIVMLKA VKQL+
Sbjct:  100 KQQIVLLRNKLHEAQEEVKKTYRALSKEVGGTSLGLGRTLNDTGGWKGRAQQIVMLKATVKQLQ 163
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BLAST of mRNA_S-dermatodea_contig1024.175.1 vs. uniprot
Match: A0A812W7Q1_SYMMI (CCDC13 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7Q1_SYMMI)

HSP 1 Score: 58.5 bits (140), Expect = 5.580e-8
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   88 LRQQTVLLRNKLQEAQEEAKKAHRALSKEIGGNGDGLDRALNEDPGWKGRGQQIVMLKARVKQLE 282
            L++Q   LR KL  +Q+E KK  RAL+KE+G  G  +++A+  D GW+GR QQIVMLKA+VK+LE
Sbjct:   82 LQKQVEDLRRKLTASQDETKKLSRALAKELG-EGVSVEQAV--DDGWRGRAQQIVMLKAKVKRLE 143
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BLAST of mRNA_S-dermatodea_contig1024.175.1 vs. uniprot
Match: A0A8J2X1K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1K6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.720e-6
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   79 EERLRQQTVLLRNKLQEAQEEAKKAHRALSKEIGGNGDGLDRAL-NEDPGWKGRGQQIVMLKARVKQLE 282
            E R  +++  LR+KL+  + E  K  RAL +E+G   D L+ AL NE  GWKGR QQIVMLK +V++LE
Sbjct:  282 ERRAEKRSAELRHKLETERAETDKLRRALVREVG---DKLEDALANEGEGWKGRAQQIVMLKNKVRRLE 347
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BLAST of mRNA_S-dermatodea_contig1024.175.1 vs. uniprot
Match: A0A7S4DJH6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJH6_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 3.110e-6
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  136 EEAKKAHRALSKEIGGNGDGLDRALNEDPGWKGRGQQIVMLKARVKQLE 282
            EE K+A RAL KE+G     L+ AL E  GW+GR QQIVML+A+VK+LE
Sbjct:    5 EELKRAQRALQKELGDGSLSLEDALEE--GWRGRAQQIVMLRAKVKRLE 51
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1024.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPQ3_ECTSI1.720e-1871.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812W7Q1_SYMMI5.580e-853.85CCDC13 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A8J2X1K6_9STRA2.720e-649.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DJH6_HETAK3.110e-659.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1024contigS-dermatodea_contig1024:11868..13422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size287
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1024.175.1prot_S-dermatodea_contig1024.175.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1024 11868..13422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.1480408-CDS-S-dermatodea_contig1024:11867..119941622924147.1480408-CDS-S-dermatodea_contig1024:11867..11994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 11868..11994 -
1694079049.89051-CDS-S-dermatodea_contig1024:11867..119941694079049.89051-CDS-S-dermatodea_contig1024:11867..11994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 11868..11994 -
1622924147.1566944-CDS-S-dermatodea_contig1024:12220..122791622924147.1566944-CDS-S-dermatodea_contig1024:12220..12279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 12221..12279 -
1694079049.898213-CDS-S-dermatodea_contig1024:12220..122791694079049.898213-CDS-S-dermatodea_contig1024:12220..12279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 12221..12279 -
1622924147.1648235-CDS-S-dermatodea_contig1024:12874..129491622924147.1648235-CDS-S-dermatodea_contig1024:12874..12949Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 12875..12949 -
1694079049.9062119-CDS-S-dermatodea_contig1024:12874..129491694079049.9062119-CDS-S-dermatodea_contig1024:12874..12949Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 12875..12949 -
1622924147.1773722-CDS-S-dermatodea_contig1024:13398..134221622924147.1773722-CDS-S-dermatodea_contig1024:13398..13422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 13399..13422 -
1694079049.915079-CDS-S-dermatodea_contig1024:13398..134221694079049.915079-CDS-S-dermatodea_contig1024:13398..13422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 13399..13422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1024.175.1

>prot_S-dermatodea_contig1024.175.1 ID=prot_S-dermatodea_contig1024.175.1|Name=mRNA_S-dermatodea_contig1024.175.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=95bp
VAAKNVRQDGRAAELQPSTTSRKNGNEERLRQQTVLLRNKLQEAQEEAKK
AHRALSKEIGGNGDGLDRALNEDPGWKGRGQQIVMLKARVKQLEG
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mRNA from alignment at S-dermatodea_contig1024:11868..13422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1024.175.1 ID=mRNA_S-dermatodea_contig1024.175.1|Name=mRNA_S-dermatodea_contig1024.175.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1555bp|location=Sequence derived from alignment at S-dermatodea_contig1024:11868..13422- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCGGCAAAAAATGTCCGGCAGGTGCGAATCATACCCTTAAAATTGGC
TGCGGTTCCCGTCGTAAATGTTTACCCCCTTGTGGATGCACGCCACCTCT
GCAACGTGAAATCGTAACAACAGTTGGCCGACCGTTTCTGCCACATATTT
CTCGGAGGCTACGTCAGAAGCTGCCGCATCCACCGTTTTAGCATCATAGT
TAGCCTAGAGCAGCCCGAGCTTGTCCCATTCCGAATGCCCGCCTTGGAAA
AAACATCTGATGGATACATGTATGATAGTTTCCTTGGAGAAGACGTGATT
TCCTTCAATGCGCCCAACGAGCATCGCTGTCAAGCCATCGGTCCCAAGTG
TCCCCGAGTATTCGCCTCTTAACGCCGTATCACCCTGGGGCGTCGCCCCC
CTTCGGCGAGGAACACCGTGCTTGAGGTTCAGTTTGGTTCGGCGGGCATT
CACCGTGCTTGCGTCCCTCACAGGACGGGCGCGCTGCTGAGCTGCAGCCA
TCGACTACCAGCCGGAAAAATGGCAATGAAGAGCGGCTCCGGCAGCAGGT
ATTGCTGCAGCTGACGAAGATTTCCCCTTGTACTCGACATGCTCAAAACA
CAATGTGACCACAAGAAACTATAAACATGATTTTTTGGGGGAAATAGTTG
GACGGTTTAGCCTCGTGCAGTAGTGTACATTAGTGCGTCGTGTTTGTGTT
AAAACAGGAACATCTAAGAATAAGAACCGAAGGCCTTGTGCTCGAGCCAA
GGTTGTGGAAAGCAACCTGATTCTGATTTCGAGTTTCCTGAAGGCTAACT
GGTAGTTCAAACATGGACGTGGAGCCCAATATGTCTGAACAAGGAGTACA
ATTGAAGCTCGTGTACTTGATGAAGCGTTCGACATCGGTGACAGCGAAAC
TCTACGTGCATAGCCACCTGAAACGGCCTATGGTGGCGTACTGTGGCCGT
CTCACTTGGCGTGGGACGAACTCGCGTCGCAGCACTCCTTTAGAAACTGG
AAATCGCGTTATATAGAGCTATCTCCTTACCAGAGGCAGAACGGGAATGC
GTGTAATGAAGCAGCAACCGGGGGAAACGTGAAAAGGCACATGGTGGATT
GAGATGCTACCCTCGTACCACGTGATCGCCAAAATATAAACAGACGGTGC
TGCTGCGGAACAAGCTTCAAGAGGCCCAGGAGGAAGCCAAGAAGGCACAC
AGGTACGAACATGATCTGCAATCTACAGCGGGTACGGGGGTCAAAAGGCG
CCGACATGGACGCCTCGCCTTTGACCGCTGGATTGTAAAGTCCGGGGCAT
AGCATGCGCACAGGGCACTGCACGAAGGGCGCCCTTTCCTTGGCACAGCT
GCATGTTGTGTTTTGTTTGCAGCGCGAGGGTACAATGCTTTACCTGAACG
CTAGTCTTCCCGCGAAACTAACCGCCAGGGCTTTGTCGAAAGAGATTGGA
GGGAACGGCGATGGGCTAGACCGCGCTCTAAACGAAGACCCCGGATGGAA
GGGACGAGGCCAGCAGATAGTTATGCTTAAGGCTAGGGTAAAGCAGTTAG
AGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1024:11868..13422-

>mRNA_S-dermatodea_contig1024.175.1 ID=mRNA_S-dermatodea_contig1024.175.1|Name=mRNA_S-dermatodea_contig1024.175.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at S-dermatodea_contig1024:11868..13422- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCGGCAAAAAATGTCCGGCAGGTGGCGGCAAAAAATGTCCGGCAGGA
CGGGCGCGCTGCTGAGCTGCAGCCATCGACTACCAGCCGGAAAAATGGCA
ATGAAGAGCGGCTCCGGCAGCAGGACGGGCGCGCTGCTGAGCTGCAGCCA
TCGACTACCAGCCGGAAAAATGGCAATGAAGAGCGGCTCCGGCAGCAGAC
GGTGCTGCTGCGGAACAAGCTTCAAGAGGCCCAGGAGGAAGCCAAGAAGG
CACACAGACGGTGCTGCTGCGGAACAAGCTTCAAGAGGCCCAGGAGGAAG
CCAAGAAGGCACACAGGGCTTTGTCGAAAGAGATTGGAGGGAACGGCGAT
GGGCTAGACCGCGCTCTAAACGAAGACCCCGGATGGAAGGGACGAGGCCA
GCAGATAGTTATGCTTAAGGCTAGGGTAAAGCAGTTAGAGGGGGGCTTTG
TCGAAAGAGATTGGAGGGAACGGCGATGGGCTAGACCGCGCTCTAAACGA
AGACCCCGGATGGAAGGGACGAGGCCAGCAGATAGTTATGCTTAAGGCTA
GGGTAAAGCAGTTAGAGGGG
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