mRNA_S-dermatodea_contig1024.174.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1024.174.1
Unique NamemRNA_S-dermatodea_contig1024.174.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1024.174.1 vs. uniprot
Match: D7FPQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ3_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.320e-26
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 3 
Query:    3 SQAHEEIHFMERQRGHAMEQLEEKFHELKEEVNALRGQTVAKGARVAGLEKANVRLRDRVKLLLAKSDTDDRLVDALRCELQTVRKTGGLSR 278
            SQA EEIH+MER RGHA+EQLE K +  +EE  ALRGQ VAKGARVAGLEK N+++R+R K+LLAKSDTDDRLVDALR E+Q +R  G  SR
Sbjct:  189 SQAQEEIHYMERHRGHAIEQLEAKCNARQEEAEALRGQLVAKGARVAGLEKTNMQIRNRAKMLLAKSDTDDRLVDALRKEVQALRNVGSSSR 280
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BLAST of mRNA_S-dermatodea_contig1024.174.1 vs. uniprot
Match: A0A7S2UWP7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.860e-7
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:    3 SQAHEEIHFMERQRGHAMEQLEEKFHELKEEVNALRGQTVAKGARVAGLEKANVRLRDRVKLLLAKSDTDDRLVDALRCELQTVRK 260
            ++A E++  ME+QR  A+EQL + +  L EE    + +  A  AR   LEK N ++++ +K+L++KS+TDD+LVD LR ++Q +++
Sbjct:   15 TKAQEDLQDMEKQRLAAVEQLSQDYQSLSEEQETTKRRLGASKARTTVLEKENKKMKENLKVLISKSETDDKLVDELRRQIQALQR 100
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BLAST of mRNA_S-dermatodea_contig1024.174.1 vs. uniprot
Match: A0A7S3AID2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AID2_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 3.600e-5
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 3 
Query:   30 MERQRGHAMEQLEEKFHELKEEVNALRGQTVAKGARVAGLEKANVRLRDRVKLLLAKSDTDDRLVDALRCELQTVRKT----GGLSR 278
            +E +R    E+L  + ++L+EEV   R +  A+ AR+  LE  +   RD++K+LL KSD+DD+LVDALR EL  +R++    GG+ R
Sbjct:   20 IEAERRREQERLLLRENQLQEEVVEGRKKLEAQAARIKNLEMDSRAKRDKLKVLLQKSDSDDQLVDALRTELSKLRESLSGGGGMGR 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1024.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPQ3_ECTSI1.320e-2669.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UWP7_9STRA2.860e-738.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3AID2_9EUKA3.600e-541.38Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1024contigS-dermatodea_contig1024:5611..11513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1156
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1024.174.1prot_S-dermatodea_contig1024.174.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1024 6486..11484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.0555704-UTR-S-dermatodea_contig1024:5610..64851622924147.0555704-UTR-S-dermatodea_contig1024:5610..6485Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1024 5611..6485 -
1694079049.8268497-UTR-S-dermatodea_contig1024:5610..64851694079049.8268497-UTR-S-dermatodea_contig1024:5610..6485Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1024 5611..6485 -
1622924147.1147225-UTR-S-dermatodea_contig1024:11484..115131622924147.1147225-UTR-S-dermatodea_contig1024:11484..11513Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1024 11485..11513 -
1694079049.8800602-UTR-S-dermatodea_contig1024:11484..115131694079049.8800602-UTR-S-dermatodea_contig1024:11484..11513Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1024 11485..11513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.0667481-CDS-S-dermatodea_contig1024:6485..65181622924147.0667481-CDS-S-dermatodea_contig1024:6485..6518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 6486..6518 -
1694079049.8362248-CDS-S-dermatodea_contig1024:6485..65181694079049.8362248-CDS-S-dermatodea_contig1024:6485..6518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 6486..6518 -
1622924147.0790536-CDS-S-dermatodea_contig1024:7061..71731622924147.0790536-CDS-S-dermatodea_contig1024:7061..7173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 7062..7173 -
1694079049.8451173-CDS-S-dermatodea_contig1024:7061..71731694079049.8451173-CDS-S-dermatodea_contig1024:7061..7173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 7062..7173 -
1622924147.092895-CDS-S-dermatodea_contig1024:10983..110511622924147.092895-CDS-S-dermatodea_contig1024:10983..11051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 10984..11051 -
1694079049.8542986-CDS-S-dermatodea_contig1024:10983..110511694079049.8542986-CDS-S-dermatodea_contig1024:10983..11051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 10984..11051 -
1622924147.1062846-CDS-S-dermatodea_contig1024:11445..114841622924147.1062846-CDS-S-dermatodea_contig1024:11445..11484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 11446..11484 -
1694079049.8628995-CDS-S-dermatodea_contig1024:11445..114841694079049.8628995-CDS-S-dermatodea_contig1024:11445..11484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1024 11446..11484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1024.174.1

>prot_S-dermatodea_contig1024.174.1 ID=prot_S-dermatodea_contig1024.174.1|Name=mRNA_S-dermatodea_contig1024.174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MERQRGHAMEQLEEKFHELKEEVNALRGQTVAKGARVAGLEKANVRLRDR
VKLLLAKSDTDDRLVDALRCELQTVRKTGGLSR*
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mRNA from alignment at S-dermatodea_contig1024:5611..11513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1024.174.1 ID=mRNA_S-dermatodea_contig1024.174.1|Name=mRNA_S-dermatodea_contig1024.174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5903bp|location=Sequence derived from alignment at S-dermatodea_contig1024:5611..11513- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGTCAGGCGCACGAAGAGATCCACTTCATGGAGCGCCAGCGCGGGCAT
GCCATGGAACAGTTAGAGGTGATAAGTATTCGGGTGGGCACACATATGTA
ACTCTGTCTAGCGGCTTGGTAACTACCGTCGTGGCTTGCAAGTTCCAGGC
CTCTTGCCTTACTTCTAGGGGCGGTTCTTTCATGGAGGCTCTCAAAATAT
CCACGCTAACATTCATCGTCACCGCCTCTCACCACTGTATCTATCAAACG
TGGTTGCGTGTAACTTTCCTGCCGCTACATCGCTGCATCGAGACAGAATA
CGTGTACTTTCGTGTTGCAACGCATTAGAGTTACGGTGAAAACAAATCGG
GAGGTGGTCACCTTCTAGTTTTTCCTTGACGAAAATCTCTCTCGAACGAC
AGACAATCGCGTACCTCATCGTTGCTCGTCGCTGCTCTGTGTGATACCTT
GTGACATAACAGGAAAAATTTCACGAGTTGAAAGAAGAGGTCAACGCCCT
ACGCGGTCAGACAGTGGCCAAAGGAGCGAGGTAGGCGGAGCCAGAAAGTC
GTTCCCCAAGGTCTGCAATCCTTGCCATACCTACCATAGGGTATGCTAGT
TGTATGGTGCAAGGAAGTTACAAGTTTGTTGGGTATCGACGAACAGCTAA
CCTTGTGCTTGTGTGAATGGGGACGAGATGCACCGCGACTTTGATAGTTG
ATTACCGGTCTTGCACGTAAGTTGAAGAACGGATTAACAACCCGAGTTCG
GACTCGGTACTCCCATGTTTTTACCCCTTTGAGGGTAACATGCACTTACC
AGAGGGAAAATTCATACCACATGTGTTGCGGCCAGATCAGATGTTCGTTT
ATGCGTTTCGTTTACACCATTGTCGCGAAATAAACGTTCCTCACGATCGC
TCCGATCTTCCCGAATCCCATGCACACGAGGACTACCAGCCCAGCCTGCG
GTGCTCTTTTCCTCTCTGTAAGGAGCATGCTCCCGAATATCGCTAATAAA
CCTTTGGGGAATGGGTCAAGTTTGCGCCGAATGTCCTGGCTACTTGTACC
AGTGTATCGCGTTCACGGGTGAACGCAAGCTGCGCGTAGCAGGGTTGTTC
ATTTCCCACCGCCCCTACGGCGGGGAGTATATAGAAAGTAGTATATTGTA
TACAGTAGCCACCGTTCGGTTACCGCACCTGCTTGGTATGAAGTACAGAG
CGGCCGGATGACCCGGAAGAATGAGTCAGTTCCAAAAGAGTTAATACAGC
GGATTTCGAAACCTTGTGTTGTATTACGGAGATACACGCTAATTAGGACC
AAATTTTCTGCTCAAGAGCGTATTGAAGTCAAGTATTGGCCCGATCACCT
TGCAACGGTTTTGTAGCTTTTTATTTGACAGTTCAGGCCGTAATATTGCA
GATATTGTAAGGCCAGACCACAATTGATTCATGGTATTATATTGGGTACA
ATTTTTTGCACATGTGGTCCTGATTATGATATTTCACTGTTTGTGCATCT
CCGTAAATATTACGGAGGTACCTGGTACACATTCGTCAGGATCAAATGAT
GTCCTTGCGATGAATATCCATATGTCCTGATTATCACATAAACATCCGAA
CAAAAAATCACCTCATCAAAAAACCAAGTCTGGCCTATTCACGCTGTGGG
ACTGAGCCCATTCTCGGGGCCATCTATCTGCCCGCACTCGAATTTCGCGT
TGAGCAGTGGTCGAACGGCGGCGGCTCCTCCTCGCCGTAGATGTGGCGAT
GGACAAATGATCAGACCCTGACACGCTAGAAAATGCAGCTCGCGTGCTCT
ACGTTGCCCGGTGCGTGTACTCGGACGTCACATAGATAATGTGTTAGTAG
TACCCGCATAGCGACGATTTTCCCCGTTAAAACTGAAGCAGTCCCAAAAG
GGTTAGTCACAACATCCACCAAAATCTTCCGGCCTACTATATTGTATACC
ACTTTCAATATAAGGCTTCTGACGTGCTGACATTCAACATGCAACTCATA
CTAGACACACAACCGAATCACAGCACACAGCCAGCCCCCGTCTGGCGTAG
TTTAAGAGCTACCACCGTGAACCGAAACCTTTGTATAGTGCCGGTATCCG
CCCCCGGGCTGGAAACCCGCTAAGTTCAATGACCATTCCGAGCCAACACA
CCGCCTCCGTTTTTAGGTAACTATTACGTTATGTTTGTCGGCGTGCTCCT
TATCGACAAGCAATCGTTCTCACTGCTACTGCTGGGTTACCATGTGTGCA
ATACCCTACTGTCGTCAGGGAAGGTTTATTCCCTCAGAATAAGGGCATCG
GTACACCACCAGTCCGGAGAACATCGCTGTGCGACTCGTCGTCCACGTAT
TGTCGTTCTAGATTTCTACGACTTCCGCTGGTCCGACGACCGACAGCAGT
GCATCCAAGGCGAAGTGAGAATCTGAGTGCGATAACAGACTCTAGAGGTG
GGCGATGGCGAAGGCTTCGAGGTCGGCTTAACAACATTCAACAGTGGCAA
CAAAGTGCCGTCTGGACACGGTCTGCTCAAAGACCTGAGCGGCGTTTTTC
ACCGATGAAGTGCGTGGCGGACCGACACCCGCGAGCAAGAACACTCTTTT
CCGCGAGACCCCTGGGTGGACTAGACCCCCAATGGTGGAAGGCAATGCCG
TTGTGGAGGTGACGCTGTTGTGTATGTGACAGAAGCGCACATACAACAGA
GACGCTTCCACAGGCCCAAAGGCGCTTGCCATCCACCTCTCGGGGTCTAG
TCCACCCAGGGTCCTCACAGAAAAGTGTATGCTTGCTCGCGGGTGTCGGT
CCGCCACACACTCAATCGGTGCATAACGCCGCTCAGGCCCTTGAGCGGGC
CGTAACCAGACGGGACATTGTTGCCGCTGTTGAATGTTGTTAAGCTGACC
TCGAAGCCTTGACCATCGCCCGCGTCTGTTTTGTCGCACTCAGACTCTCC
CTTCGCCGTGGATGGACTGCTGTCGGTCATCGGACCAGCGGAAGTCGTAG
AAATCTGGAGAGAAAAGACGTGGACTACGAGTCGCACATCGATGTTCTCC
GGACTGGTGGTGTACCGAGGCCCACTGGTGGTGTACGGAGGCCCTTATTC
CGAGGGTGGAAAGCTTTCATGACGAGAGTAGCGACGGGGTGTTGCGCACA
TGCTCACGCAGTAGTAGCAGTGAGAACGATGGCTTGTCGATTAGGGTCAT
GGCGACAAACATTACATAAAAACGGAGGTGGTGTGTTGGCTCGGGATGGC
CATCGAATTTAGCGGATTCCCAGCCCAGGGCGGAGGAGAGGGCGCGGATA
CGGGGACCGCTATACAGAGGTAGCCAGCCGTGGCATTTGATTTGCAAAAT
TTTCGATTCACGGTGGTAGCGCTCAACCTACCTCAGGCCGGGGCTGGCTG
TCCTGAGTATCGGTTGCGTTTACACCCCTGAAACAACGAATAAGTTCGAC
AGCATGAAGCGAGCGTTGGGGTCGAAGCTTTTTGTGGAGAGGAAGTATAC
TCAAAGCTCACACTCTATGGAGGTCTGCGTTGTGAACGGCACTATGGCAT
CATTGTGGAATGTCTTTGTCTCGGCAAAATCGCGGCACTATAATTTACCA
CTGGAAAAGGGGTGCTTTTTGAGTCAATAAATATTGTATCAATAGTGACT
CCACAAATACTGTGACTTTGAGCGCATTTTTTTGCCATTTACGCGCTTGA
TTTTACCGAAACTCTCCTGCCCATCCTTAATTCTGGGGTTTACACCACCC
GCATACTGCCGTGTTAACTCTTTCGGGACTGAGTATTATATCGCGGTGAC
GGCAGGCAAACTAAGCGTGGAATGGAAATCAGAACTTATCCAGCACCACT
ACCACTACGGCGAGGAGTTGCCACCCTTTACGACTGTAACTGTTTGATGT
GAAATACTATGCAGGCAGGTAGCTTAACCCCAAAAACGGACTCAGTGGCA
AATATGTTAAAAAGTAACATTACCATATATATTTGATGAATAGCACCATA
GAGACCGGGTGATAGGATCTCTCATATCATATAAGATTATTTTTTTATCA
GGCCCAAGTTATGAGGTATGCCCCCTCTGTTTCCGAGAGTTTGTGCCAAT
TCCGTCTTATTCTGTACCAGTACTACATACAGTAGGTAATTCCGTAGTTT
TGTTTTCGATCTTTCGATTTCTCATCTGAGCACGAGCGGGATTGGCAACA
ATTTGTGGCCCTGTCGGTTGTAGGTGTGATAATCAATCAATCAATAAATC
AACCAACAAGCACTCACTACATCCTAACACCCTTTCAACCCAGAGGATTC
TAAAATGTCACGACGTGCTTGTATGACCGTTTTCCTGTAGAGTGGCCGGA
CTGGAGAAGGCCAACGTGCGCCTTAGAGATCGTGTAAAGTTGTTGCTCGC
CAAGTCCGACACGGACGACCGACTGGTGGACGCACTCCGCTGCGAATTGC
AGGTGAGTACCCACGGGACCCTCGCTGCTTCCGTCCTCGAAGAAGCTCTT
GTGAGCTTCCCACTGGCATAACATAGGTGATATATCAACTTTTTCCCGTA
ACGTGCTGCAAGTGTGAGGCATGAGGCATATTCATTACAGCTGAGTGTTA
TGTGCCATGTAATGTGCAACCCATGAATATTTCTGCCGGGTACTCCATAA
CAATACACAATGTGTGAGAGTGCTAATTTATAGTGTGTGAGTGGAAGGTC
TGCCAGTAAGACGCGTGTGCTCGCCTTGGGACTAGGCTCTAGAGATCATG
GCGCCCGCCTGGCGGGCTCGCGCTGTCATGACTACTTGTATGGATACCCA
GTGTATTTTATCAGACCCTTTGGCGCGGTAGCAGTCGGTGCCTGCCTCAA
ATACTGCGAACTGTGTCGTTTGAAGCAGGACGGCAGGGACAATTGAATAT
TTATATGATGTGTCGTGATGTGCTAGGCCCACCCGTCAACTCTTTTTTAT
TGTTTCCGGCGTCTGTGATTTTTCGTGTGGTGATGGAAACGTCAGACGGT
GCGGAAGACTGGAGGCTTGTCACGATAAAGGGCTCTAGGAGCATGCTACG
CGGTTTGTACACATTCTTGGTTCTCCAAGCATCGTGTGGCTCTACTACTA
CCCGAACGGAGAATTGGACTCCTAACACTCTCCTACTGTAAATATGAAAC
CTTATCCTGAGCGCTAGGGTTAGGCTCAGCTGTGAGGTCTGCCGGTGACG
TATTACTCATGTGTAGACGCCGTGTAATGGTGCATGCGGGTGTTTTGGTG
CAAGAAGCTGGCGCTTACACGTGCAGACGTCGTAGACTGGCGCACGACGG
TGCTTCGACGCAAGAACCTGGCAGTAGCCCACACTTTCATACAGAAACGA
GTGCATCTGCGTTGCTGGACATTTCGGCCGTTTCTCCACCCTCTGAACAT
GCCGAGATGAGACAGGCAGATACAAGGGAGACATTAGTTTGTTGTGATCT
TTGAAACTGAGCGCTGAAGTATACAGGCTGTACATTCTCCAAGAGAACAT
ATCTTGATGTGGGTGGAGCGTACGTGCAAGCAAGGCGAATGGGCTGTGTT
CGCATGGATGGGCTGTTTGCGGAGGGTTTGGGGGATAAATCGCCGATCTA
AAGAGCAAGTTTGCGTCAACGCTTACTACCGCTGTCTCACGTTATGATAC
CGTACAATACCATGCGCAGTGTGGGCCGGTGTGACTATTGTGCGCGGTCC
GTTTAGTTAGTTGCGTTTTGGATAGGGTTATTTCGTTATTTAGAGGGGAT
CGCCTTATGTGTCCCGTATAGCGAGCCTGGAAACCCCTCCGTTTTCCTGT
TTTCATCTGGGGGAAAAAATAGCTTTGATACGCACAAGCCTTTTTACGGA
GATCTAACCAGTTTAAGGCGAGAGCAATATCCATCTGGAAGGCTTATGGG
GGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1024:5611..11513-

>mRNA_S-dermatodea_contig1024.174.1 ID=mRNA_S-dermatodea_contig1024.174.1|Name=mRNA_S-dermatodea_contig1024.174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig1024:5611..11513- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCGCCAGCGCGGGCATGCCATGGAACAGTTAGAGATGGAGCGCCA
GCGCGGGCATGCCATGGAACAGTTAGAGGAAAAATTTCACGAGTTGAAAG
AAGAGGTCAACGCCCTACGCGGTCAGACAGTGGCCAAAGGAGCGAGGAAA
AATTTCACGAGTTGAAAGAAGAGGTCAACGCCCTACGCGGTCAGACAGTG
GCCAAAGGAGCGAGAGTGGCCGGACTGGAGAAGGCCAACGTGCGCCTTAG
AGATCGTGTAAAGTTGTTGCTCGCCAAGTCCGACACGGACGACCGACTGG
TGGACGCACTCCGCTGCGAATTGCAGAGTGGCCGGACTGGAGAAGGCCAA
CGTGCGCCTTAGAGATCGTGTAAAGTTGTTGCTCGCCAAGTCCGACACGG
ACGACCGACTGGTGGACGCACTCCGCTGCGAATTGCAGACGGTGCGGAAG
ACTGGAGGCTTGTCACGATAAACGGTGCGGAAGACTGGAGGCTTGTCACG
ATAA
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