mRNA_S-dermatodea_contig10236.171.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10236.171.1
Unique NamemRNA_S-dermatodea_contig10236.171.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: D7FLF9_ECTSI (Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF9_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 8.970e-116
Identity = 214/299 (71.57%), Postives = 227/299 (75.92%), Query Frame = 1
Query:   10 APSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQAILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPT----------SXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGAK 876
            APSEAEAQCAALAREGVVYGTATEDMDALTF+TPKLLRRMTFSGS Q ILEVDYQKLLQGLELSHE+FVDLC+LCGCDYTGSIKGIGPKKALALVRQH TIEEIIKHLD+ KYPVPDDWLEP+ERAE+  XXXXXXXXXXXXXXXXXXXXX                                   +                          DDTPPMYR+AR LFL+PE EPA ++KLKWTDPDEPGL+KFLVE KGFNAERVASGIVKLK ARKNVSQKRMDSFFSV+PNPNAGAK
Sbjct:  159 APSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWLEPAERAERRKXXXXXXXXXXXXXXXXXXXXXAETANPEAVSEEDVQQKEGDSDSDKAKADTPDHGVSVAKEAADVSAKRERETEDAAESEQEMDDTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFFSVIPNPNAGAK 457          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A835Z748_9STRA (Flap endonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z748_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.730e-65
Identity = 188/290 (64.83%), Postives = 219/290 (75.52%), Query Frame = 1
Query:    4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQAILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLE---PSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFF-SVVPNP 861
            + A  EAEAQCAALAR+GVV+GT TEDMDALTFRTPKL+RR+T +   Q I+EVDY  +L+GL L+HE+FVD+CILCGCDYT SI+GIGPKKAL L+++H +IEEI+KHLD SK+ +P DW+    P+  A+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  P +                D  PMY+ AR LFLEP+  PA+ + LKWTDP+   L  FLVE   FNAERVA+GI KLK ARK   Q RMD+FF S  P P
Sbjct:  158 VDASCEAEAQCAALARDGVVFGTGTEDMDALTFRTPKLIRRLT-TNKNQPIMEVDYAGVLEGLGLTHEEFVDMCILCGCDYTDSIRGIGPKKALMLIKKHHSIEEILKHLDRSKHGIPADWIPGETPTPLAKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAPVVQEAVPA------DKIPMYKEARRLFLEPDVFPANTYDLKWTDPNVEELTTFLVEKMQFNAERVAAGIKKLKEARKKGGQTRMDTFFKSTAPPP 440          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A2P8XUV2_BLAGE (Flap endonuclease 1 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XUV2_BLAGE)

HSP 1 Score: 202 bits (515), Expect = 1.030e-57
Identity = 120/292 (41.10%), Postives = 149/292 (51.03%), Query Frame = 1
Query:    1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGA 873
            +++AP EAEAQCAAL + G V+ TATEDMDALTF T  LLR MTFS +++  I E    K+L+GLELS  +F+DLCIL GCDY  SIKGIGPK+A+ L+RQH  +E I+K+LD +KY VP+DW                                                                                         MY+ AR LFLEPE     K  LKWTDPDE GLVK+L  +K FN +RV +G  KL  AR   +Q R+DSFF V+P+PN  A
Sbjct:   86 YIEAPCEAEAQCAALVKAGKVFATATEDMDALTFGTSVLLRHMTFSEARKMPIQEFHLSKVLEGLELSQNEFIDLCILLGCDYCDSIKGIGPKRAIDLIRQHRNLETILKNLDKNKYAVPEDW-----------------------------------------------------------------------------------------MYKEARQLFLEPEVADVEKLDLKWTDPDEEGLVKYLCGDKAFNEDRVRNGSKKLAKARSGTTQGRLDSFFKVLPSPNNNA 288          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A7S2SD31_9STRA (Flap endonuclease 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD31_9STRA)

HSP 1 Score: 202 bits (515), Expect = 6.040e-56
Identity = 135/283 (47.70%), Postives = 169/283 (59.72%), Query Frame = 1
Query:    4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTP--PMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFF 843
            ++AP EAEAQCAALA+ G+V+ TATEDMDALTF+TP LL+RMTFS  QQA I+++ + KLL GL ++ EQFVDLCILCGCDY     GIGPK AL LVR++  +E I+K+LD  K+P+P  W  P+ +        XXXXXXXXXXXXXXXX                                   +P +                + P  P++   R LF  P  +      LKWT+PDE GL+KFLVE KGFNAERV+SGI KLK  +   +Q+RMDSFF
Sbjct:  180 IEAPGEAEAQCAALAKAGLVWATATEDMDALTFQTPHLLKRMTFSAKQQAPIMQISHDKLLHGLGITQEQFVDLCILCGCDYCDRPSGIGPKTALKLVRKYGNLENIVKNLDKKKHPLPVGWERPAPKPADPAPAAXXXXXXXXXXXXXXXXSEGGSEVTHEENETDAQ------------------EPDAKPEPAASAETAQEPEKEQPWEPLFVEVRQLFHTPLVQDPVNCSLKWTEPDEEGLIKFLVEEKGFNAERVSSGIKKLKEMKGKGTQQRMDSFF 444          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A6P7VFA4_IXOSC (Flap endonuclease 1 n=8 Tax=Ixodidae TaxID=6939 RepID=A0A6P7VFA4_IXOSC)

HSP 1 Score: 197 bits (502), Expect = 4.910e-55
Identity = 114/293 (38.91%), Postives = 151/293 (51.54%), Query Frame = 1
Query:    1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGAK 876
            +++AP EAEAQCA L + G VYGTATEDMD LTF T  LLR MT+S +++  I E + +++L GLEL+ ++F+DLCIL GCDY  SI+GIGPK+A+ L++QH +IE+II  +D+ KY +P+DW                                                                                          ++ AR LFLEPE  PAS+ +LKWTDPDE GLVKFL E  GF+ ER+ +G  KL   R   +Q R+DSFF VVP+    AK
Sbjct:  152 YIEAPCEAEAQCAELVKGGKVYGTATEDMDGLTFGTNVLLRHMTYSEARKMPIKEFNLERVLSGLELNRDEFIDLCILLGCDYCESIRGIGPKRAIELIKQHKSIEKIISSIDTKKYTIPEDWP-----------------------------------------------------------------------------------------FKEARQLFLEPEVTPASEIQLKWTDPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKVVPSEGPSAK 355          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A6T7HKT1_9STRA (Flap endonuclease 1 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HKT1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 6.780e-55
Identity = 159/294 (54.08%), Postives = 188/294 (63.95%), Query Frame = 1
Query:    4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQAILE-VDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVS--QKRMDSFFSVVPNPNAGAK 876
            ++AP EAEAQ +ALAR G VY TATEDMDALTFRTP LLR+MTF+ + ++ ++ +DY+K L+GL+L+H+QFVDLCIL GCDY  SIKG+GPK AL L+R+HS IE I+KH+D +KY +PD W+    RA +        XX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                P+Y  AR LF E E     K  LKW       L KFLV+  GFNAERVA  I KL  A +     Q RMDSFF+V PNPNA AK
Sbjct:  160 VRAPCEAEAQASALARAGTVYATATEDMDALTFRTPILLRKMTFANASKSDIQTMDYKKALEGLDLNHDQFVDLCILLGCDYCDSIKGVGPKTALKLIREHSDIETILKHIDRNKYTIPDAWIPNEARASEKEDQVKEEXXKAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELLV---------------------------PIYVEARRLFKEHEV--LEKVDLKWVPCQPEPLTKFLVDEMGFNAERVAKSIEKLTKALQKTCKPQARMDSFFTVKPNPNAAAK 424          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: UPI000E6D6795 (flap endonuclease 1 n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6795)

HSP 1 Score: 196 bits (497), Expect = 2.510e-54
Identity = 117/292 (40.07%), Postives = 145/292 (49.66%), Query Frame = 1
Query:    4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGAK 876
            + AP EAEAQCAAL + G V+ TATEDMDALTF    LLR +TFS +++  +LE+   K+LQGLEL H++FVDLCIL GCDY GSI+GIGPK+A+ L+RQH  IEE++K++D SKYP P++W                                                                                          Y  AR LF EPE   A   +LKW+DPDE GLVKFL  +K FN ERV +G  KL  AR   +Q R+D FF V   PN   K
Sbjct:  153 VDAPCEAEAQCAALVKAGKVFATATEDMDALTFGADVLLRHLTFSEARKMPVLEIHLDKVLQGLELKHKEFVDLCILLGCDYCGSIRGIGPKRAIELIRQHRCIEEVLKNIDVSKYPPPENWE-----------------------------------------------------------------------------------------YENARRLFFEPEVADAKDIELKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLLKARSGTTQGRLDGFFKVTTTPNPKRK 355          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: UPI001E670742 (flap endonuclease 1-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E670742)

HSP 1 Score: 196 bits (497), Expect = 2.580e-54
Identity = 115/294 (39.12%), Postives = 148/294 (50.34%), Query Frame = 1
Query:    1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNP-NAGAK 876
            ++ AP EAEAQCAALA+ G VYG ATEDMDALTF TP LLR MTFS +++  I E    K+L+ +++S E+F+D+CIL GCDY  SI+GIGPK+A+ L+R H TI+EI+KH+D+ KY  P+DW                                                                                          +  AR LF+EPE        LKW +PDE GLVK++ E KGFN ER+ SG+ KL  AR   +Q R+DSFF V+P P NA  K
Sbjct:  152 YVDAPCEAEAQCAALAKAGKVYGVATEDMDALTFGTPILLRHMTFSEARKMPIKEFHLSKILEEIKISQEEFIDMCILLGCDYCDSIRGIGPKRAIELIRNHKTIDEILKHIDTKKYSPPEDWR-----------------------------------------------------------------------------------------FAEARKLFIEPEVADPEDIDLKWNEPDEEGLVKYMCEEKGFNEERIRSGVKKLLKARSGSTQGRLDSFFKVLPQPPNASNK 356          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: UPI000DBEEB28 (flap endonuclease 1 isoform X2 n=1 Tax=Harpegnathos saltator TaxID=610380 RepID=UPI000DBEEB28)

HSP 1 Score: 193 bits (491), Expect = 2.970e-54
Identity = 110/288 (38.19%), Postives = 149/288 (51.74%), Query Frame = 1
Query:    1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNP 861
            ++ AP EAEAQCAAL + G V+ TATEDMDALTF    LLRR+TFS +++  + E+ + K+L GLEL+H +F+DLCI+ GCDYTGSIKG+GPK+A+ L++ H ++E+II+++D+ K+PVP+DW                                                                                          Y+ AR LF EPE   A    LKW++PDE  LVKFL  +K FN ERV +G  KL  AR   +Q R+DSFF ++PNP
Sbjct:   82 YIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLGCDYTGSIKGVGPKRAIELIKNHKSLEKIIENIDTKKFPVPEDWN-----------------------------------------------------------------------------------------YKEARLLFQEPEVSNADDIVLKWSEPDEEDLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKILPNP 280          
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A154P9X1_DUFNO (Flap endonuclease 1 n=2 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P9X1_DUFNO)

HSP 1 Score: 195 bits (495), Expect = 5.450e-54
Identity = 112/289 (38.75%), Postives = 149/289 (51.56%), Query Frame = 1
Query:    1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPN 864
            ++ AP EAEAQCAAL + G V+ TATEDMDALTF    LLRR+TFS +++  + E  + K+L+GLEL+H +F+DLCI+ GCDYT SIKGIGPK+A+ L++ H ++E I+++LD+ KY +P+DW                                                                                          Y++AR LF EPE     K  LKW+DPDE GLV+FL  NK FN ERV +G  KL  AR   +Q R+D+FF V+PNPN
Sbjct:  155 YIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHFDKVLEGLELNHNEFIDLCIMLGCDYTNSIKGIGPKRAIELIKTHRSLENIVENLDTKKYSIPEDWN-----------------------------------------------------------------------------------------YKQARILFQEPEVTNPEKIDLKWSDPDEEGLVEFLCGNKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPN 354          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF9_ECTSI8.970e-11671.57Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z748_9STRA3.730e-6564.83Flap endonuclease 1 n=1 Tax=Tribonema minus TaxID=... [more]
A0A2P8XUV2_BLAGE1.030e-5741.10Flap endonuclease 1 n=1 Tax=Blattella germanica Ta... [more]
A0A7S2SD31_9STRA6.040e-5647.70Flap endonuclease 1 n=1 Tax=Rhizochromulina marina... [more]
A0A6P7VFA4_IXOSC4.910e-5538.91Flap endonuclease 1 n=8 Tax=Ixodidae TaxID=6939 Re... [more]
A0A6T7HKT1_9STRA6.780e-5554.08Flap endonuclease 1 n=1 Tax=Attheya septentrionali... [more]
UPI000E6D67952.510e-5440.07flap endonuclease 1 n=1 Tax=Hyposmocoma kahamanoa ... [more]
UPI001E6707422.580e-5439.12flap endonuclease 1-like n=1 Tax=Procambarus clark... [more]
UPI000DBEEB282.970e-5438.19flap endonuclease 1 isoform X2 n=1 Tax=Harpegnatho... [more]
A0A154P9X1_DUFNO5.450e-5438.75Flap endonuclease 1 n=2 Tax=Dufourea novaeangliae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10236contigS-dermatodea_contig10236:5309..7575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.2
Seed ortholog evalue4.1e-84
Seed eggNOG ortholog2880.D7FLF9
Preferred nameFEN1
KEGG koko:K04799
KEGG Pathwayko03030,ko03410,ko03450,map03030,map03410,map03450
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000287,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000731,GO:0000734,GO:0000737,GO:0001302,GO:0001654,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004529,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006286,GO:0006302,GO:0006303,GO:0006308,GO:0006309,GO:0006310,GO:0006312,GO:0006401,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007275,GO:0007423,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007568,GO:0007569,GO:0007610,GO:0007611,GO:0007613,GO:0008150,GO:0008152,GO:0008219,GO:0008297,GO:0008309,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0010564,GO:0010638,GO:0012501,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016891,GO:0016893,GO:0016895,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022616,GO:0030145,GO:0030154,GO:0030262,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0035312,GO:0035753,GO:0035822,GO:0035861,GO:0042592,GO:0043010,GO:0043137,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045145,GO:0045165,GO:0045787,GO:0045876,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0048256,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051276,GO:0051716,GO:0051726,GO:0051908,GO:0051983,GO:0051984,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090734,GO:0097159,GO:0097194,GO:0098501,GO:0098502,GO:0104004,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902969,GO:1903047,GO:1903469,GO:1904162,GO:2001252
EggNOG free text desc.endonuclease activity
EggNOG OGsCOG0258@1,KOG2519@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionXPG-I domain
Ec32 orthologEc-12_008010.1
Exons6
Model size1451
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10236.171.1prot_S-dermatodea_contig10236.171.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10236 5797..7491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924146.7785141-UTR-S-dermatodea_contig10236:5308..57961622924146.7785141-UTR-S-dermatodea_contig10236:5308..5796Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10236 5309..5796 -
1694079049.6579072-UTR-S-dermatodea_contig10236:5308..57961694079049.6579072-UTR-S-dermatodea_contig10236:5308..5796Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10236 5309..5796 -
1622924146.893856-UTR-S-dermatodea_contig10236:7491..75751622924146.893856-UTR-S-dermatodea_contig10236:7491..7575Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10236 7492..7575 -
1694079049.7352214-UTR-S-dermatodea_contig10236:7491..75751694079049.7352214-UTR-S-dermatodea_contig10236:7491..7575Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10236 7492..7575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924146.83787-CDS-S-dermatodea_contig10236:5796..59231622924146.83787-CDS-S-dermatodea_contig10236:5796..5923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 5797..5923 -
1694079049.670159-CDS-S-dermatodea_contig10236:5796..59231694079049.670159-CDS-S-dermatodea_contig10236:5796..5923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 5797..5923 -
1622924146.8506749-CDS-S-dermatodea_contig10236:6085..61661622924146.8506749-CDS-S-dermatodea_contig10236:6085..6166Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 6086..6166 -
1694079049.6789098-CDS-S-dermatodea_contig10236:6085..61661694079049.6789098-CDS-S-dermatodea_contig10236:6085..6166Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 6086..6166 -
1622924146.859914-CDS-S-dermatodea_contig10236:6310..63931622924146.859914-CDS-S-dermatodea_contig10236:6310..6393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 6311..6393 -
1694079049.687659-CDS-S-dermatodea_contig10236:6310..63931694079049.687659-CDS-S-dermatodea_contig10236:6310..6393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 6311..6393 -
1622924146.8685536-CDS-S-dermatodea_contig10236:6521..68931622924146.8685536-CDS-S-dermatodea_contig10236:6521..6893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 6522..6893 -
1694079049.6991718-CDS-S-dermatodea_contig10236:6521..68931694079049.6991718-CDS-S-dermatodea_contig10236:6521..6893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 6522..6893 -
1622924146.876864-CDS-S-dermatodea_contig10236:7119..72331622924146.876864-CDS-S-dermatodea_contig10236:7119..7233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 7120..7233 -
1694079049.7079995-CDS-S-dermatodea_contig10236:7119..72331694079049.7079995-CDS-S-dermatodea_contig10236:7119..7233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 7120..7233 -
1622924146.8851047-CDS-S-dermatodea_contig10236:7389..74911622924146.8851047-CDS-S-dermatodea_contig10236:7389..7491Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 7390..7491 -
1694079049.7232566-CDS-S-dermatodea_contig10236:7389..74911694079049.7232566-CDS-S-dermatodea_contig10236:7389..7491Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10236 7390..7491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10236.171.1

>prot_S-dermatodea_contig10236.171.1 ID=prot_S-dermatodea_contig10236.171.1|Name=mRNA_S-dermatodea_contig10236.171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=293bp
MDALTFRTPKLLRRMTFSGSQQAILEVDYQKLLQGLELSHEQFVDLCILC
GCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSER
AEKRKQARQEAKARKEARAKEEAKAKADTPKEEAPDPVEGANEENGTTEE
TNGVAVEGGDPTSKRDREAEKDEESEDEDDTPPMYRRARALFLEPEAEPA
SKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMD
SFFSVVPNPNAGAKMKPAAKGKSGAGAKGKATAKGKGKGKKR*
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mRNA from alignment at S-dermatodea_contig10236:5309..7575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10236.171.1 ID=mRNA_S-dermatodea_contig10236.171.1|Name=mRNA_S-dermatodea_contig10236.171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2267bp|location=Sequence derived from alignment at S-dermatodea_contig10236:5309..7575- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTTGCAGGCTCCATCCGAAGCCGAGGCCCAGTGCGCCGCCTTGGCCCG CGAGGGAGTGGTGTACGGTACCGCCACGGAGGACATGGACGCGCTCACCT TTCGAACCCCCAAGCTGCTCCGACGAATGACTTTCTCTGGTTCGCAACAA GCCATCCTAGAGGTCGACTACCAGAAGCTCCTCCAGGTATGAAACGCTTC GTGCAACGATGGGACCCGTTTCTTCGAACGCTAAACATGAGGGCAGCATC TTGTACCCTGCGGCATGTATTGAACTGTGTTGCGCAGCAGGCTCATAGCT TGTCTGATCTGTTACGCTGCTTCACGGTTGTCCTGTCCGCAGGGATTGGA GTTATCTCACGAGCAATTCGTCGACTTGTGCATCCTCTGCGGGTGTGACT ACACTGGGTCGATAAAGGGAATCGGTCCGAAGAAAGCGCTAGCTCTCGTA CGTCAGGTAAAAACATTACAACTTCCTGTACACATGGCGTGTCCTCGAAC GCTTCTAGGGCATGGGGAAAGGCCCATAAACACCGCACATACCGTTATAG GCGTTGCATGTTAGCTGTGCACTCTTGCCATCCAGCTCGAATCGATATAT TGGTTGCTTTTCCTCGCCAAAATCGCAAAGATAGTACTGTACGTCTTTAA ACTCCCACATAACCATTCCTCCATTCGCTCAGCACAGTACGATTGAGGAG ATCATCAAGCACCTGGACTCTTCCAAGTACCCAGTCCCGGATGACTGGCT CGAGCCCTCGGAGAGAGCCGAGAAGCGCAAGCAGGCAAGACAAGAGGCGA AGGCGAGGAAGGAAGCGAGGGCAAAAGAAGAGGCGAAGGCGAAAGCTGAC ACTCCCAAGGAGGAGGCGCCGGATCCGGTTGAAGGAGCCAACGAGGAAAA CGGTACTACGGAGGAGACGAACGGCGTTGCCGTGGAAGGTGGCGACCCAA CATCGAAACGCGACAGAGAGGCGGAGAAGGACGAAGAAAGCGAAGATGAA GATGACACTCCTCCCATGTACCGCCGAGCTAGAGCCCTTTTCCTCGAACC TGAGGTATGTTAGAAACGACCCTCTAGCTTGCACGTCCTCGATTGACAAA GGCAACCAGCTCACCGGAATTGCGCCTCCTGTTATTGCCATTGACTACAC GTAATGCTGATGTCATCTAATGCACGCGACAGGCGGAACCCGCGAGCAAG TTCAAGCTGAAGTGGACAGATCCTGATGAACCAGGGCTGGTGAAATTTCT TGTCGAAAACAAGGGGTGGGTGCTACAACTACTAGGGCGGGATGGGCAGT GTGTGGGAGTTGTCTACGCTGAGATGGCTACTGCTGGTGATATTCCCAGA CGACAGCAGACGAGGGACAGGCAAAAGTACTGACCGTTACCTTAATGCAA TGTTTTCAGGTTCAACGCTGAACGCGTGGCATCCGGTATCGTCAAGCTCA AGAACGCGCGGAAGAATGTATCACAGAAGCGAATGGACAGGTGTGTTCCT TGTTCAATGCCAGGTTTCGCCCCAGTTGGTTGGTGCTGATATTGTCGAGT TACCATGGCTGATAAACCAAGACAAGGAAGTGATGAATCATGATATGACT CCTATTATTGTCCTCTATCGAACGTGATGCTGTCATTTGTTTCTTCCAAC AGCTTCTTCAGCGTAGTCCCCAATCCCAACGCTGGCGCAAAGATGAAGCC CGCGGCGAAAGGAAAAAGCGGCGCCGGAGCAAAAGGAAAGGCCACTGCCA AGGGAAAGGGCAAGGGCAAGAAACGGTAGTGATAGTGCAGTGTAGATAGA ACGCCTCTTCTTCTTAGAATCTCAGCTTTGCCTGACAGCCTCAAGGAGAG CCAACCTTGGTCGCTCGTGTTTCAACAATCCTTCGGCAAGCCTCAGCTAC ACGCGTATCACGTAGTTCACGAGGACATGGAATAAGGAAGATAGGATTGT CTTGGCGAAGATGGCGCGATTTCCTGTACCGTCCCGATCGCGGAATCGGC TGAAGACCCACGAATTATCCGTCCTCCCGGTTTTGAAGGAAAGCAGAGCA GTAGGTGTACTCTTCGCTGACGTCGTCGGACAGTGGTGTCTGGAGTAACG ACGAGCGGAAGGGCGAAATGTTTTTTTATAACACCAGTTTCAGACTCTCA CTTTATTGCAGACTGCACTTCTCCAACGGCACACAGTGTGGCCATATGCG ATTGAGACTTGGTTTACCGAAGGGTGGCAAAGAAACATGCTGTGATACTT TGACGCGACGTTGTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10236:5309..7575-

>mRNA_S-dermatodea_contig10236.171.1 ID=mRNA_S-dermatodea_contig10236.171.1|Name=mRNA_S-dermatodea_contig10236.171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at S-dermatodea_contig10236:5309..7575- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCGCTCACCTTTCGAACCCCCAAGCTGCTCCGACGAATGACTTT
CTCTGGTTCGCAACAAGCCATCCTAGAGGTCGACTACCAGAAGCTCCTCC
AGATGGACGCGCTCACCTTTCGAACCCCCAAGCTGCTCCGACGAATGACT
TTCTCTGGTTCGCAACAAGCCATCCTAGAGGTCGACTACCAGAAGCTCCT
CCAGGGATTGGAGTTATCTCACGAGCAATTCGTCGACTTGTGCATCCTCT
GCGGGTGTGACTACACTGGGTCGATAAAGGGAATCGGTCCGAAGAAAGCG
CTAGCTCTCGTACGTCAGGGATTGGAGTTATCTCACGAGCAATTCGTCGA
CTTGTGCATCCTCTGCGGGTGTGACTACACTGGGTCGATAAAGGGAATCG
GTCCGAAGAAAGCGCTAGCTCTCGTACGTCAGCACAGTACGATTGAGGAG
ATCATCAAGCACCTGGACTCTTCCAAGTACCCAGTCCCGGATGACTGGCT
CGAGCCCTCGGAGAGAGCCGAGAAGCGCAAGCAGGCAAGACAAGAGGCGA
AGGCGAGGAAGGAAGCGAGGGCAAAAGAAGAGGCGAAGGCGAAAGCTGAC
ACTCCCAAGGAGGAGGCGCCGGATCCGGTTGAAGGAGCCAACGAGGAAAA
CGGTACTACGGAGGAGACGAACGGCGTTGCCGTGGAAGGTGGCGACCCAA
CATCGAAACGCGACAGAGAGGCGGAGAAGGACGAAGAAAGCGAAGATGAA
GATGACACTCCTCCCATGTACCGCCGAGCTAGAGCCCTTTTCCTCGAACC
TGAGCACAGTACGATTGAGGAGATCATCAAGCACCTGGACTCTTCCAAGT
ACCCAGTCCCGGATGACTGGCTCGAGCCCTCGGAGAGAGCCGAGAAGCGC
AAGCAGGCAAGACAAGAGGCGAAGGCGAGGAAGGAAGCGAGGGCAAAAGA
AGAGGCGAAGGCGAAAGCTGACACTCCCAAGGAGGAGGCGCCGGATCCGG
TTGAAGGAGCCAACGAGGAAAACGGTACTACGGAGGAGACGAACGGCGTT
GCCGTGGAAGGTGGCGACCCAACATCGAAACGCGACAGAGAGGCGGAGAA
GGACGAAGAAAGCGAAGATGAAGATGACACTCCTCCCATGTACCGCCGAG
CTAGAGCCCTTTTCCTCGAACCTGAGGCGGAACCCGCGAGCAAGTTCAAG
CTGAAGTGGACAGATCCTGATGAACCAGGGCTGGTGAAATTTCTTGTCGA
AAACAAGGGGCGGAACCCGCGAGCAAGTTCAAGCTGAAGTGGACAGATCC
TGATGAACCAGGGCTGGTGAAATTTCTTGTCGAAAACAAGGGGTTCAACG
CTGAACGCGTGGCATCCGGTATCGTCAAGCTCAAGAACGCGCGGAAGAAT
GTATCACAGAAGCGAATGGACAGGTTCAACGCTGAACGCGTGGCATCCGG
TATCGTCAAGCTCAAGAACGCGCGGAAGAATGTATCACAGAAGCGAATGG
ACAGCTTCTTCAGCGTAGTCCCCAATCCCAACGCTGGCGCAAAGATGAAG
CCCGCGGCGAAAGGAAAAAGCGGCGCCGGAGCAAAAGGAAAGGCCACTGC
CAAGGGAAAGGGCAAGGGCAAGAAACGGTAGCTTCTTCAGCGTAGTCCCC
AATCCCAACGCTGGCGCAAAGATGAAGCCCGCGGCGAAAGGAAAAAGCGG
CGCCGGAGCAAAAGGAAAGGCCACTGCCAAGGGAAAGGGCAAGGGCAAGA
AACGGTAG
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