mRNA_S-dermatodea_contig10236.171.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: D7FLF9_ECTSI (Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF9_ECTSI) HSP 1 Score: 358 bits (918), Expect = 8.970e-116 Identity = 214/299 (71.57%), Postives = 227/299 (75.92%), Query Frame = 1
Query: 10 APSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQAILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPT----------SXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGAK 876
APSEAEAQCAALAREGVVYGTATEDMDALTF+TPKLLRRMTFSGS Q ILEVDYQKLLQGLELSHE+FVDLC+LCGCDYTGSIKGIGPKKALALVRQH TIEEIIKHLD+ KYPVPDDWLEP+ERAE+ XXXXXXXXXXXXXXXXXXXXX + DDTPPMYR+AR LFL+PE EPA ++KLKWTDPDEPGL+KFLVE KGFNAERVASGIVKLK ARKNVSQKRMDSFFSV+PNPNAGAK
Sbjct: 159 APSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWLEPAERAERRKXXXXXXXXXXXXXXXXXXXXXAETANPEAVSEEDVQQKEGDSDSDKAKADTPDHGVSVAKEAADVSAKRERETEDAAESEQEMDDTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFFSVIPNPNAGAK 457
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A835Z748_9STRA (Flap endonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z748_9STRA) HSP 1 Score: 227 bits (578), Expect = 3.730e-65 Identity = 188/290 (64.83%), Postives = 219/290 (75.52%), Query Frame = 1
Query: 4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQAILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLE---PSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFF-SVVPNP 861
+ A EAEAQCAALAR+GVV+GT TEDMDALTFRTPKL+RR+T + Q I+EVDY +L+GL L+HE+FVD+CILCGCDYT SI+GIGPKKAL L+++H +IEEI+KHLD SK+ +P DW+ P+ A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P + D PMY+ AR LFLEP+ PA+ + LKWTDP+ L FLVE FNAERVA+GI KLK ARK Q RMD+FF S P P
Sbjct: 158 VDASCEAEAQCAALARDGVVFGTGTEDMDALTFRTPKLIRRLT-TNKNQPIMEVDYAGVLEGLGLTHEEFVDMCILCGCDYTDSIRGIGPKKALMLIKKHHSIEEILKHLDRSKHGIPADWIPGETPTPLAKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAPVVQEAVPA------DKIPMYKEARRLFLEPDVFPANTYDLKWTDPNVEELTTFLVEKMQFNAERVAAGIKKLKEARKKGGQTRMDTFFKSTAPPP 440
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A2P8XUV2_BLAGE (Flap endonuclease 1 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XUV2_BLAGE) HSP 1 Score: 202 bits (515), Expect = 1.030e-57 Identity = 120/292 (41.10%), Postives = 149/292 (51.03%), Query Frame = 1
Query: 1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGA 873
+++AP EAEAQCAAL + G V+ TATEDMDALTF T LLR MTFS +++ I E K+L+GLELS +F+DLCIL GCDY SIKGIGPK+A+ L+RQH +E I+K+LD +KY VP+DW MY+ AR LFLEPE K LKWTDPDE GLVK+L +K FN +RV +G KL AR +Q R+DSFF V+P+PN A
Sbjct: 86 YIEAPCEAEAQCAALVKAGKVFATATEDMDALTFGTSVLLRHMTFSEARKMPIQEFHLSKVLEGLELSQNEFIDLCILLGCDYCDSIKGIGPKRAIDLIRQHRNLETILKNLDKNKYAVPEDW-----------------------------------------------------------------------------------------MYKEARQLFLEPEVADVEKLDLKWTDPDEEGLVKYLCGDKAFNEDRVRNGSKKLAKARSGTTQGRLDSFFKVLPSPNNNA 288
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A7S2SD31_9STRA (Flap endonuclease 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD31_9STRA) HSP 1 Score: 202 bits (515), Expect = 6.040e-56 Identity = 135/283 (47.70%), Postives = 169/283 (59.72%), Query Frame = 1
Query: 4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTP--PMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFF 843
++AP EAEAQCAALA+ G+V+ TATEDMDALTF+TP LL+RMTFS QQA I+++ + KLL GL ++ EQFVDLCILCGCDY GIGPK AL LVR++ +E I+K+LD K+P+P W P+ + XXXXXXXXXXXXXXXX +P + + P P++ R LF P + LKWT+PDE GL+KFLVE KGFNAERV+SGI KLK + +Q+RMDSFF
Sbjct: 180 IEAPGEAEAQCAALAKAGLVWATATEDMDALTFQTPHLLKRMTFSAKQQAPIMQISHDKLLHGLGITQEQFVDLCILCGCDYCDRPSGIGPKTALKLVRKYGNLENIVKNLDKKKHPLPVGWERPAPKPADPAPAAXXXXXXXXXXXXXXXXSEGGSEVTHEENETDAQ------------------EPDAKPEPAASAETAQEPEKEQPWEPLFVEVRQLFHTPLVQDPVNCSLKWTEPDEEGLIKFLVEEKGFNAERVSSGIKKLKEMKGKGTQQRMDSFF 444
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A6P7VFA4_IXOSC (Flap endonuclease 1 n=8 Tax=Ixodidae TaxID=6939 RepID=A0A6P7VFA4_IXOSC) HSP 1 Score: 197 bits (502), Expect = 4.910e-55 Identity = 114/293 (38.91%), Postives = 151/293 (51.54%), Query Frame = 1
Query: 1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGAK 876
+++AP EAEAQCA L + G VYGTATEDMD LTF T LLR MT+S +++ I E + +++L GLEL+ ++F+DLCIL GCDY SI+GIGPK+A+ L++QH +IE+II +D+ KY +P+DW ++ AR LFLEPE PAS+ +LKWTDPDE GLVKFL E GF+ ER+ +G KL R +Q R+DSFF VVP+ AK
Sbjct: 152 YIEAPCEAEAQCAELVKGGKVYGTATEDMDGLTFGTNVLLRHMTYSEARKMPIKEFNLERVLSGLELNRDEFIDLCILLGCDYCESIRGIGPKRAIELIKQHKSIEKIISSIDTKKYTIPEDWP-----------------------------------------------------------------------------------------FKEARQLFLEPEVTPASEIQLKWTDPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKVVPSEGPSAK 355
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A6T7HKT1_9STRA (Flap endonuclease 1 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HKT1_9STRA) HSP 1 Score: 199 bits (506), Expect = 6.780e-55 Identity = 159/294 (54.08%), Postives = 188/294 (63.95%), Query Frame = 1
Query: 4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQAILE-VDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVS--QKRMDSFFSVVPNPNAGAK 876
++AP EAEAQ +ALAR G VY TATEDMDALTFRTP LLR+MTF+ + ++ ++ +DY+K L+GL+L+H+QFVDLCIL GCDY SIKG+GPK AL L+R+HS IE I+KH+D +KY +PD W+ RA + XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+Y AR LF E E K LKW L KFLV+ GFNAERVA I KL A + Q RMDSFF+V PNPNA AK
Sbjct: 160 VRAPCEAEAQASALARAGTVYATATEDMDALTFRTPILLRKMTFANASKSDIQTMDYKKALEGLDLNHDQFVDLCILLGCDYCDSIKGVGPKTALKLIREHSDIETILKHIDRNKYTIPDAWIPNEARASEKEDQVKEEXXKAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELLV---------------------------PIYVEARRLFKEHEV--LEKVDLKWVPCQPEPLTKFLVDEMGFNAERVAKSIEKLTKALQKTCKPQARMDSFFTVKPNPNAAAK 424
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: UPI000E6D6795 (flap endonuclease 1 n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6795) HSP 1 Score: 196 bits (497), Expect = 2.510e-54 Identity = 117/292 (40.07%), Postives = 145/292 (49.66%), Query Frame = 1
Query: 4 LQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPNAGAK 876
+ AP EAEAQCAAL + G V+ TATEDMDALTF LLR +TFS +++ +LE+ K+LQGLEL H++FVDLCIL GCDY GSI+GIGPK+A+ L+RQH IEE++K++D SKYP P++W Y AR LF EPE A +LKW+DPDE GLVKFL +K FN ERV +G KL AR +Q R+D FF V PN K
Sbjct: 153 VDAPCEAEAQCAALVKAGKVFATATEDMDALTFGADVLLRHLTFSEARKMPVLEIHLDKVLQGLELKHKEFVDLCILLGCDYCGSIRGIGPKRAIELIRQHRCIEEVLKNIDVSKYPPPENWE-----------------------------------------------------------------------------------------YENARRLFFEPEVADAKDIELKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLLKARSGTTQGRLDGFFKVTTTPNPKRK 355
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: UPI001E670742 (flap endonuclease 1-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E670742) HSP 1 Score: 196 bits (497), Expect = 2.580e-54 Identity = 115/294 (39.12%), Postives = 148/294 (50.34%), Query Frame = 1
Query: 1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNP-NAGAK 876
++ AP EAEAQCAALA+ G VYG ATEDMDALTF TP LLR MTFS +++ I E K+L+ +++S E+F+D+CIL GCDY SI+GIGPK+A+ L+R H TI+EI+KH+D+ KY P+DW + AR LF+EPE LKW +PDE GLVK++ E KGFN ER+ SG+ KL AR +Q R+DSFF V+P P NA K
Sbjct: 152 YVDAPCEAEAQCAALAKAGKVYGVATEDMDALTFGTPILLRHMTFSEARKMPIKEFHLSKILEEIKISQEEFIDMCILLGCDYCDSIRGIGPKRAIELIRNHKTIDEILKHIDTKKYSPPEDWR-----------------------------------------------------------------------------------------FAEARKLFIEPEVADPEDIDLKWNEPDEEGLVKYMCEEKGFNEERIRSGVKKLLKARSGSTQGRLDSFFKVLPQPPNASNK 356
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: UPI000DBEEB28 (flap endonuclease 1 isoform X2 n=1 Tax=Harpegnathos saltator TaxID=610380 RepID=UPI000DBEEB28) HSP 1 Score: 193 bits (491), Expect = 2.970e-54 Identity = 110/288 (38.19%), Postives = 149/288 (51.74%), Query Frame = 1
Query: 1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNP 861
++ AP EAEAQCAAL + G V+ TATEDMDALTF LLRR+TFS +++ + E+ + K+L GLEL+H +F+DLCI+ GCDYTGSIKG+GPK+A+ L++ H ++E+II+++D+ K+PVP+DW Y+ AR LF EPE A LKW++PDE LVKFL +K FN ERV +G KL AR +Q R+DSFF ++PNP
Sbjct: 82 YIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLGCDYTGSIKGVGPKRAIELIKNHKSLEKIIENIDTKKFPVPEDWN-----------------------------------------------------------------------------------------YKEARLLFQEPEVSNADDIVLKWSEPDEEDLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKILPNP 280
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Match: A0A154P9X1_DUFNO (Flap endonuclease 1 n=2 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P9X1_DUFNO) HSP 1 Score: 195 bits (495), Expect = 5.450e-54 Identity = 112/289 (38.75%), Postives = 149/289 (51.56%), Query Frame = 1
Query: 1 FLQAPSEAEAQCAALAREGVVYGTATEDMDALTFRTPKLLRRMTFSGSQQA-ILEVDYQKLLQGLELSHEQFVDLCILCGCDYTGSIKGIGPKKALALVRQHSTIEEIIKHLDSSKYPVPDDWLEPSERAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPTSXXXXXXXXXXXXXXXDDTPPMYRRARALFLEPEAEPASKFKLKWTDPDEPGLVKFLVENKGFNAERVASGIVKLKNARKNVSQKRMDSFFSVVPNPN 864
++ AP EAEAQCAAL + G V+ TATEDMDALTF LLRR+TFS +++ + E + K+L+GLEL+H +F+DLCI+ GCDYT SIKGIGPK+A+ L++ H ++E I+++LD+ KY +P+DW Y++AR LF EPE K LKW+DPDE GLV+FL NK FN ERV +G KL AR +Q R+D+FF V+PNPN
Sbjct: 155 YIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHFDKVLEGLELNHNEFIDLCIMLGCDYTNSIKGIGPKRAIELIKTHRSLENIVENLDTKKYSIPEDWN-----------------------------------------------------------------------------------------YKQARILFQEPEVTNPEKIDLKWSDPDEEGLVEFLCGNKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPN 354 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10236.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10236.171.1 >prot_S-dermatodea_contig10236.171.1 ID=prot_S-dermatodea_contig10236.171.1|Name=mRNA_S-dermatodea_contig10236.171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=293bp MDALTFRTPKLLRRMTFSGSQQAILEVDYQKLLQGLELSHEQFVDLCILCback to top mRNA from alignment at S-dermatodea_contig10236:5309..7575- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10236.171.1 ID=mRNA_S-dermatodea_contig10236.171.1|Name=mRNA_S-dermatodea_contig10236.171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2267bp|location=Sequence derived from alignment at S-dermatodea_contig10236:5309..7575- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10236:5309..7575- >mRNA_S-dermatodea_contig10236.171.1 ID=mRNA_S-dermatodea_contig10236.171.1|Name=mRNA_S-dermatodea_contig10236.171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at S-dermatodea_contig10236:5309..7575- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |