mRNA_S-dermatodea_contig10235.169.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10235.169.1
Unique NamemRNA_S-dermatodea_contig10235.169.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.290e-20
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQ EMI+AE +ILGRSTDELTSYAGYGGA+    G KLCYHN+RG+ DYGKAGA EV
Sbjct:   95 VQREMIRAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNMRGIGDYGKAGAAEV 151          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: D8LMK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.280e-13
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            +Q EM+KAE +ILGR TD L SY GYGGA     G KL Y+N+ G+  YG+AGAGE 
Sbjct:    1 MQREMMKAEQAILGRFTDALASYTGYGGAMKNLQGDKLWYNNMLGIGAYGEAGAGET 57          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A7S4K336_9STRA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K336_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.370e-12
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            +QHE + AE ++LGRS  ELTS  GY G      GGK+CYHNL+ V+DYGK G GEV
Sbjct:   91 IQHEFVLAERNLLGRSDKELTSRTGYAGGTKTGDGGKVCYHNLQFVADYGKLGHGEV 147          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: B7FSB8_PHATC (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSB8_PHATC)

HSP 1 Score: 68.2 bits (165), Expect = 3.500e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQHE+++AE +ILGRS +ELT+ AGY G    A  GK+CYHN   ++DYGK G  EV
Sbjct:   82 VQHELVEAEKTILGRSDNELTARAGYAGGTKGAKDGKVCYHNAAQIADYGKLGHAEV 138          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A7S1YNI6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YNI6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.350e-12
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQHE+++AE S+LGRS ++LTS AGY G  G A  GK+CYHN   V+DYGK G  EV
Sbjct:   98 VQHELVEAERSMLGRSDEQLTSRAGYAG--GKAPDGKVCYHNALNVADYGKLGHAEV 152          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A1E7F616_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F616_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.660e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQHEM++AE  +LGR    LTS AGY G       GK+CYHNL  VSDYGK G  E+
Sbjct:   30 VQHEMVEAERKLLGRDDKMLTSRAGYAGGNLGMKDGKVCYHNLAMVSDYGKLGHAEI 86          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A6U3BKH7_9EUKA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3BKH7_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 1.470e-10
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQHEM++ E  +L R   +LTS  GY G +    GGK+CYHN+R V+DYG+ G  EV
Sbjct:  107 VQHEMVELEEKVLSRRGKQLTSLTGYAGGKKLGDGGKVCYHNMRQVADYGRLGHAEV 163          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A7S0ASC4_9STRA (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASC4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.540e-10
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 VQHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQHE + AE  ILGRS D+LT+ AGY G R  A    +CYHN RGV DYG  G  EV
Sbjct:   94 VQHEFVVAEQRILGRSEDDLTARAGYAGGR--AKDDLVCYHNARGVGDYGTLGHAEV 148          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A7S0H279_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H279_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 4.170e-9
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    4 QHEMIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            QHE I+ E   LGRS  +LTS  GY G +     G++CYHN+R ++DYG+ G  EV
Sbjct:  224 QHEFIEMEKQKLGRSGSQLTSLTGYAGGKKVGDSGRVCYHNMRQIADYGRLGHAEV 279          
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Match: A0A8J5XTY7_DIALT (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XTY7_DIALT)

HSP 1 Score: 59.3 bits (142), Expect = 4.890e-9
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 VQHEMI-KAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGAGEV 171
            VQH+++ + E +ILGRS +ELT+  GY G    +  G++CYH++ GVSDYG  G  EV
Sbjct:   57 VQHDVVTRVERAILGRSDEELTALTGYAGGTHTSQDGRVCYHSMTGVSDYGMLGHAEV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10235.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LMK2_ECTSI3.290e-2075.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMK3_ECTSI3.280e-1357.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4K336_9STRA1.370e-1257.89Peptide-methionine (S)-S-oxide reductase n=2 Tax=O... [more]
B7FSB8_PHATC3.500e-1256.14Peptide-methionine (S)-S-oxide reductase n=2 Tax=P... [more]
A0A7S1YNI6_9STRA7.350e-1259.65Peptide-methionine (S)-S-oxide reductase n=1 Tax=G... [more]
A0A1E7F616_9STRA3.660e-1156.14Peptide-methionine (S)-S-oxide reductase n=1 Tax=F... [more]
A0A6U3BKH7_9EUKA1.470e-1050.88Peptide-methionine (S)-S-oxide reductase n=1 Tax=L... [more]
A0A7S0ASC4_9STRA2.540e-1057.89Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
A0A7S0H279_9EUKA4.170e-948.21Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A8J5XTY7_DIALT4.890e-948.28Peptide-methionine (S)-S-oxide reductase n=2 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10235contigS-dermatodea_contig10235:4377..4550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D8LMK2
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs2DF2K@1,2RZE5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003060.1
Exons1
Model size174
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924146.5228415-CDS-S-dermatodea_contig10235:4376..45381622924146.5228415-CDS-S-dermatodea_contig10235:4376..4538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10235 4377..4538 -
1694079049.470051-CDS-S-dermatodea_contig10235:4376..45381694079049.470051-CDS-S-dermatodea_contig10235:4376..4538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10235 4377..4538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924146.5355191-UTR-S-dermatodea_contig10235:4538..45501622924146.5355191-UTR-S-dermatodea_contig10235:4538..4550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10235 4539..4550 -
1694079049.4859848-UTR-S-dermatodea_contig10235:4538..45501694079049.4859848-UTR-S-dermatodea_contig10235:4538..4550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10235 4539..4550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10235.169.1prot_S-dermatodea_contig10235.169.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10235 4377..4538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10235.169.1

>prot_S-dermatodea_contig10235.169.1 ID=prot_S-dermatodea_contig10235.169.1|Name=mRNA_S-dermatodea_contig10235.169.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MIKAEMSILGRSTDELTSYAGYGGARGAAAGGKLCYHNLRGVSDYGKAGA
GEV*
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mRNA from alignment at S-dermatodea_contig10235:4377..4550-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10235.169.1 ID=mRNA_S-dermatodea_contig10235.169.1|Name=mRNA_S-dermatodea_contig10235.169.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at S-dermatodea_contig10235:4377..4550- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCAGCACGAGATGATCAAAGCGGAGATGAGCATCTTGGGAAGATCCAC GGACGAGCTGACGTCGTACGCTGGGTACGGCGGCGCGAGGGGTGCGGCAG CTGGCGGGAAGCTGTGCTACCACAACCTTCGGGGAGTAAGCGACTACGGC AAGGCGGGCGCCGGCGAGGTATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10235:4377..4550-

>mRNA_S-dermatodea_contig10235.169.1 ID=mRNA_S-dermatodea_contig10235.169.1|Name=mRNA_S-dermatodea_contig10235.169.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig10235:4377..4550- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCAAAGCGGAGATGAGCATCTTGGGAAGATCCACGGACGAGCTGAC
GTCGTACGCTGGGTACGGCGGCGCGAGGGGTGCGGCAGCTGGCGGGAAGC
TGTGCTACCACAACCTTCGGGGAGTAAGCGACTACGGCAAGGCGGGCGCC
GGCGAGGTATGAATGATCAAAGCGGAGATGAGCATCTTGGGAAGATCCAC
GGACGAGCTGACGTCGTACGCTGGGTACGGCGGCGCGAGGGGTGCGGCAG
CTGGCGGGAAGCTGTGCTACCACAACCTTCGGGGAGTAAGCGACTACGGC
AAGGCGGGCGCCGGCGAGGTATGA
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