mRNA_S-dermatodea_contig10226.164.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10226.164.1
Unique NamemRNA_S-dermatodea_contig10226.164.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10226.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10226contigS-dermatodea_contig10226:4857..5734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10226.164.1prot_S-dermatodea_contig10226.164.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10226 4986..5734 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924146.0418181-UTR-S-dermatodea_contig10226:4856..49851622924146.0418181-UTR-S-dermatodea_contig10226:4856..4985Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10226 4857..4985 +
1694079049.1360397-UTR-S-dermatodea_contig10226:4856..49851694079049.1360397-UTR-S-dermatodea_contig10226:4856..4985Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10226 4857..4985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924146.051323-CDS-S-dermatodea_contig10226:4985..50661622924146.051323-CDS-S-dermatodea_contig10226:4985..5066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10226 4986..5066 +
1694079049.1445522-CDS-S-dermatodea_contig10226:4985..50661694079049.1445522-CDS-S-dermatodea_contig10226:4985..5066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10226 4986..5066 +
1622924146.05943-CDS-S-dermatodea_contig10226:5635..57341622924146.05943-CDS-S-dermatodea_contig10226:5635..5734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10226 5636..5734 +
1694079049.1532478-CDS-S-dermatodea_contig10226:5635..57341694079049.1532478-CDS-S-dermatodea_contig10226:5635..5734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10226 5636..5734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10226.164.1

>prot_S-dermatodea_contig10226.164.1 ID=prot_S-dermatodea_contig10226.164.1|Name=mRNA_S-dermatodea_contig10226.164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
MEPAGKGERSVGDRRSSGGLAVRLASDASTFLESPQPASADNSAAASPAA
QMPRQRAPKR
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mRNA from alignment at S-dermatodea_contig10226:4857..5734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10226.164.1 ID=mRNA_S-dermatodea_contig10226.164.1|Name=mRNA_S-dermatodea_contig10226.164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=878bp|location=Sequence derived from alignment at S-dermatodea_contig10226:4857..5734+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTCGGACTTTAGGCAAGAGGGGAAAGACTGAAGAATCTGGGGAGTATC
ATTGCCGACGGATGCTGTCGTTGAACGTCACTTGTCCTGTGTCTCTCCTG
CGCTGAAACCTGCTGCGCGCGTGTCGTGGATGGAGCCTGCTGGAAAGGGG
GAGAGATCTGTCGGGGATAGGCGGTCGTCGGGAGGGTTGGCGGTGCGGCT
CGCTTCGGATGTGAGACTCTTATTTTTTCAGTCTTCCTGTAGTGTGTACA
AATGTTTGTATGTAGTGCTACTGTACATATCGTGCGCAATTTATGTATGG
TGGAAATATCAGAATATTGGAATGTCCACACGCACCACCTTTACCACGCC
CCTCAATTTCCAATTGAATTATCAAAAGCCGATTATTGGCTTATGTGCTT
TGTGCGGAGAGAGATATCCCATACGTTGGCCCTCCTCCTGCTGCTGCTGC
TGCTGGTGGCAGTGCTCCTAAGACCTGCTGCAGCTGCTGCTCTGCTTGTT
GCTGTTTGTGTAAGTGATGATCACTACGATGATAATATTGTGCGGGTGCG
GCGCATTTTGCATTGTCTCGTACTCTTGTCATACTTTTTTTCACTGCTAC
GTACTGAGTACAAAGTGCAGACGGCAGCATGCACACAAGACACTGATAGG
GCCGATGTCGTTGTACAGTTTTCAATGTCAATAGGCTAGGGCGGCCAGAG
CGAGCCTAGACTTTTGATCCTCCCGCCCCTCCTCGCCAACCACGCACTGC
TACTATACTAATCCTGCTGTAAAAAGCAGGCATCAACCTTCCTCGAGAGC
CCACAGCCCGCTTCGGCTGATAATAGCGCAGCAGCTTCGCCGGCGGCGCA
AATGCCGAGGCAACGAGCACCCAAGCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10226:4857..5734+

>mRNA_S-dermatodea_contig10226.164.1 ID=mRNA_S-dermatodea_contig10226.164.1|Name=mRNA_S-dermatodea_contig10226.164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig10226:4857..5734+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCCTGCTGGAAAGGGGGAGAGATCTGTCGGGGATAGGCGGTCGTC
GGGAGGGTTGGCGGTGCGGCTCGCTTCGGATATGGAGCCTGCTGGAAAGG
GGGAGAGATCTGTCGGGGATAGGCGGTCGTCGGGAGGGTTGGCGGTGCGG
CTCGCTTCGGATGCATCAACCTTCCTCGAGAGCCCACAGCCCGCTTCGGC
TGATAATAGCGCAGCAGCTTCGCCGGCGGCGCAAATGCCGAGGCAACGAG
CACCCAAGCGAGCATCAACCTTCCTCGAGAGCCCACAGCCCGCTTCGGCT
GATAATAGCGCAGCAGCTTCGCCGGCGGCGCAAATGCCGAGGCAACGAGC
ACCCAAGCGA
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