mRNA_S-dermatodea_contig10224.162.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: D7FIG3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG3_ECTSI) HSP 1 Score: 392 bits (1007), Expect = 3.730e-122 Identity = 258/589 (43.80%), Postives = 321/589 (54.50%), Query Frame = 2
Query: 20 GADPTDEAR--RIRILSYNVMGPRFGRASQQGQSVTTLRRRKEFRKWTKRSLRLEDEISEYHEAD-GGIQAVCLQEVTPKTLQDTWVPFMRSLGLDGYVYQPKHASPKRHSSHEHLGVAVFYSNHHFENTAEMRVFFPEHVHRLRVDSDSSSRRESKRTRSDSSGAARRPTDDDATEK----------------YVETVHDGSPSSDLDSGDGRSAHACTTSRLEQDLSSKPDAAVMVRLRLRSGGTAKQQPS--------------FTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGC-VAETGPANLIICGDFNSVPVVQPVFLPGPLKATAKMSLKAHNKRGGH--------SNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFIPELLRKERTGKNGRSRTPR----KEHDPAIRH-----PDTPPLHHSLGAWSTGFGTALEDVYRDRGVLAPRFTTKTIRFSGVIDHMFVSSGEKNSGLAIAGALTFPAGADLAEG-----AGAGTHLKGVEDV--NNEVQKPARKRAGERFGPIPDEVWGSDHLALGVEIAFL 1612
GA+ EA RIRILSYNV+G R G A + + R W R RL +EI Y ++D GG+Q +CLQEVT +TL W+PFM LGLD +VYQPK P+R LGVA+FYS+ HFE AE+RV F E LR D R + RS SS A+ P A K ++ V+ G D G R T SRLEQDL+++ DAA +VRLRL+ ++ S FT+VC HL+Y P RPDLKTAQC +LF AI R HE+CGVA GGG+ G + GPANL++C DFNS P+V P FLPGPLKA A+ L+ G S ++ +YPS++ ASGVY LL+YG V HPEHPD FIPE L+++ + R P+ K P P P H G W +GFG LED YRDRG ++P FTTKT FSG+IDH+FVS+GEK+SGLAI+G L FP GA L EG +G G E E P A FGPIP+++WGSDHLALGVE+ L
Sbjct: 56 GAERKGEAASDRIRILSYNVLGARQGLADKHDHVGV------DIRNWPTRRDRLREEIWSYCKSDPGGVQVICLQEVTFRTLGYDWLPFMAKLGLDRHVYQPKSDRPQRRHRSRCLGVAIFYSSTHFEKMAEVRVVFSEETLGLRED------RGREGERSHSSRASELPEAVPAAPKATTTRAGKGAAPPCDQFLRRVYGG----DTGRGAKREQDPATVSRLEQDLANRHDAAALVRLRLKESDDLEEGASGKGXXXXXXENGRSFTVVCAHLFYDPNRPDLKTAQCQMLFQAIDRLHEKCGVA----SALGGGKAGSEIPSLGPANLVLCADFNSKPLVDPWFLPGPLKAAAQARLQTTAAIGSQDPSAPTPGSQPNTSKDVYPSSQATASGVYCLLNYGCVPPTHPEHPDTFIPEWLKRKEQEEISRQELPKVGGGKLWTPRRTRRTRGAPVVPAEHRPSGEWVSGFGGTLEDAYRDRGAVSPSFTTKTSSFSGIIDHIFVSTGEKDSGLAISGVLAFPPGAHLTEGRETTSSGEDLEQSGPEPTPDRQEEHSPTDPPAWGEFGPIPNKLWGSDHLALGVELVLL 624
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: A0A7S4DBB1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBB1_HETAK) HSP 1 Score: 85.5 bits (210), Expect = 1.430e-13 Identity = 99/327 (30.28%), Postives = 137/327 (41.90%), Query Frame = 2
Query: 644 LSSKPDAAVMVRLRLRSGGTAKQQPSFTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGCVAETGPANLIICGDFNSVPVVQPVFLPGPLKATAKMSLKAHNKRGGHSNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFIPELLRKERTGKNGRSRTPRKEHDPAIRHPDTPPLHHSLGAWSTGF---GTALEDVYR--DRGVLAPRFTTKTIRFSGVIDHMFVSSGEKNSGLAIAGALTFPAGADLAEGAGAGTHLKGVEDVNNEVQKPARKRAGERFGPIPDEVWGSDHLALGVEIAF 1609
L+ K DAA M+ L+ + GT F +V H ++ P PD K Q + A++ F + MV E V E+ V ++I CGD NSVP VQ +LPG K K + G ++ SAE+ S VY+LL +G V H +HPDA L RT +P K+ A + + S S G L ++Y D + P FTTKT F ID+++ GT VE + +Q P ERF P+P++ WGSDHLALGV +F
Sbjct: 243 LNEKSDAAAMLLLQDKRAGT-----KFVVVNMHNFFDPWFPDTKACQVAGVARALQIFLND----MVLEGVLSPDEKEKV------HIIFCGDMNSVPYVQEEWLPGN-KEMRYYQTKDIEILESSDKFALGRNVPESAEDM-SAVYALLHFGEVRPSHVQHPDA-----LHLHRTTAAATKDSPGKQGGLAEKEGSS---KGSAAGRSVGLLEGPRGLRNLYMEGDGRMHLPSFTTKTNVFCATIDYLW------------------------------GTKDVVVEQL---LQFPENT---ERFSPVPNQFWGSDHLALGVTFSF 508
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: A0A7S4C664_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C664_CHRCT) HSP 1 Score: 73.9 bits (180), Expect = 1.190e-11 Identity = 55/182 (30.22%), Postives = 77/182 (42.31%), Query Frame = 2
Query: 611 HACTTSRLEQDLSSKPDAAVMVRLRLRSGGTAKQQPSFTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGCVAETGPANLIICGDFNSVPVVQPVFLPGPLKATAKMSLKAHNKRGGHSNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFIPELL 1156
H RL + L + +A +M+ LR R+ G + HL++ P RP++K AQ L+ +A RF EC PA ++I GDFNSVP +QP F+ + + R E + S VY L S G A+HPEHPD F P+ L
Sbjct: 12 HVFHKGRLRETLHMQDEAVLMLLLRHRASGAC-----VLVATTHLFWDPYRPEVKAAQAELVAEATTRFLIECD--------------------RPAAVVITGDFNSVPHLQPEFIG--------IDVSEEEMR----------------ENSLSAVYQLYSQGICPARHPEHPDRFKPKAL 144
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: A0A1D1ZX90_AUXPR (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX90_AUXPR) HSP 1 Score: 63.2 bits (152), Expect = 5.840e-7 Identity = 73/292 (25.00%), Postives = 104/292 (35.62%), Query Frame = 2
Query: 719 SFTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGCVAETGPANLIICGDFNSVPVVQPVFLPGPLKATAKMSLKAHNKRGGHSNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFIPELLRKERTGKNGRSRTPRKEHDPAIRHPDTPPLHHSLGAWSTGFGTALEDVYRDRGVLAPRFTTKTIRFSGVIDHMFVSSGEKNSGLAIAGALTFPAGADLAEGAGAGTHLKGVEDVNNEVQKPARKRAGERFGPIPDEVWGSDHLALG 1594
+F HL+YHP PDLK Q H A+R F A+ GP L++ GDFNS+ A ++S + P SGVY LLS GRVA + +HP + + + GR R W T G +LE P FT T F+G +D++++S G+ + GA+ P G++ E P + G +GP+P SDH+ALG
Sbjct: 70 AFCAAVTHLYYHPRHPDLKVLQAHAACAAVRAFAS--------------------AQGGPQPLLLAGDFNSL-------------AEKRVSDEFDE--------------VPEGCIKVSGVYELLSQGRVAHSNSDHPAS-------RNSPAELGRLRDVE---------------------W-TSTGLSLESAAVRAWGREPSFTNHTPSFTGCLDYVWLSRGDWQ----VVGAMAMPGGSEGGE--------------------PNQATPG--YGPLPSATEPSDHVALG 259
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: A0A3M7KQT1_AUXPR (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KQT1_AUXPR) HSP 1 Score: 62.4 bits (150), Expect = 9.790e-7 Identity = 72/292 (24.66%), Postives = 104/292 (35.62%), Query Frame = 2
Query: 719 SFTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGCVAETGPANLIICGDFNSVPVVQPVFLPGPLKATAKMSLKAHNKRGGHSNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFIPELLRKERTGKNGRSRTPRKEHDPAIRHPDTPPLHHSLGAWSTGFGTALEDVYRDRGVLAPRFTTKTIRFSGVIDHMFVSSGEKNSGLAIAGALTFPAGADLAEGAGAGTHLKGVEDVNNEVQKPARKRAGERFGPIPDEVWGSDHLALG 1594
+F HL+YHP PDLK Q H A+R F A+ GP +++ GDFNS+ A ++S + P SGVY LLS GRVA + +HP + + + GR R W T G +LE P FT T F+G +D++++S G+ + GA+ P G++ E P + G +GP+P SDH+ALG
Sbjct: 86 AFCAAVTHLYYHPRHPDLKVLQAHAACAAVRAFAS--------------------AQGGPQPILLAGDFNSL-------------AEKRVSDEFDE--------------VPEGCIKVSGVYELLSQGRVAHSNSDHPAS-------RNSPAELGRLRDVE---------------------W-TSTGLSLESAAVRAWGREPSFTNHTPSFTGCLDYVWLSRGDWQ----VVGAMAMPGGSEGGE--------------------PNQATPG--YGPLPSATEPSDHVALG 275
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: A0A1D1ZNS3_AUXPR (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNS3_AUXPR) HSP 1 Score: 63.2 bits (152), Expect = 1.180e-6 Identity = 73/292 (25.00%), Postives = 104/292 (35.62%), Query Frame = 2
Query: 719 SFTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGCVAETGPANLIICGDFNSVPVVQPVFLPGPLKATAKMSLKAHNKRGGHSNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFIPELLRKERTGKNGRSRTPRKEHDPAIRHPDTPPLHHSLGAWSTGFGTALEDVYRDRGVLAPRFTTKTIRFSGVIDHMFVSSGEKNSGLAIAGALTFPAGADLAEGAGAGTHLKGVEDVNNEVQKPARKRAGERFGPIPDEVWGSDHLALG 1594
+F HL+YHP PDLK Q H A+R F A+ GP L++ GDFNS+ A ++S + P SGVY LLS GRVA + +HP + + + GR R W T G +LE P FT T F+G +D++++S G+ + GA+ P G++ E P + G +GP+P SDH+ALG
Sbjct: 183 AFCAAVTHLYYHPRHPDLKVLQAHAACAAVRAFAS--------------------AQGGPQPLLLAGDFNSL-------------AEKRVSDEFDE--------------VPEGCIKVSGVYELLSQGRVAHSNSDHPAS-------RNSPAELGRLRDVE---------------------W-TSTGLSLESAAVRAWGREPSFTNHTPSFTGCLDYVWLSRGDWQ----VVGAMAMPGGSEGGE--------------------PNQATPG--YGPLPSATEPSDHVALG 372
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Match: A0A835WGX7_9CHLO (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WGX7_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 3.810e-6 Identity = 83/327 (25.38%), Postives = 120/327 (36.70%), Query Frame = 2
Query: 659 DAAVMVRLRLRSGGTAKQQPSFTLVCCHLWYHPLRPDLKTAQCHLLFDAIRRFHEECGVAMVSEEVTGGGERGCVAETGPANLIICGDFNSVPVV-QP-VFLPGPLKATAKMSLKAHNKRGGHSNTSSGSSIYPSAEEAASGVYSLLSYGRVAAKHPEHPDAFI--PELLRKERTGKNGRSRTPRKEHDPAIRHPDTPPLHHSLGAWSTGFGTALEDVYRDRGVLAPRFTTKTIRFSGVIDHMFVSSGEKNSGLAIAGALTFP---AGAD--LAEGAGAGTHLKGVEDVNNEVQKPARKRAGERFGPIPDEVWGSDHLALGVEIAFL 1612
+ AVM LR R G C H +++P+ PD+K Q LL + F ++ +++CGDFNS+ QP VF P P SGVY LLS G +A HP+HP + P + G A R P P L A G+ + P TT+T F+G +D++++S GL + AL+ P G+ +A GA A + P A P+P+E +GSDHLA+G E+ F+
Sbjct: 159 EGAVMALLRHRDSGRL-----LVFSCTHAFWNPVFPDVKALQVALLCGELAAFSKQAAAEQGGXXXXX--XXXXXXXXXXXXVVLCGDFNSLAEKRQPDVFDPQ----------------------------VPEGARQVSGVYQLLSGGTLAPDHPDHPHTRVWKPGPMAPTVIPAGGEG---------APRFPALP-----LSASGLRLGSLNALAFGRE----PPLTTRTATFAGTLDYVWLSQ----PGLEVTAALSLPFEDGGSPPLMAPGAAAAGPGAAASTQPGTWRDPVADVA---MVPVPNEEYGSDHLAVGGEVQFV 425 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10224.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10224.162.1 >prot_S-dermatodea_contig10224.162.1 ID=prot_S-dermatodea_contig10224.162.1|Name=mRNA_S-dermatodea_contig10224.162.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=514bp MGPRFGRASQQGQSVTTLRRRKEFRKWTKRSLRLEDEISEYHEADGGIQAback to top mRNA from alignment at S-dermatodea_contig10224:3745..7982- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10224.162.1 ID=mRNA_S-dermatodea_contig10224.162.1|Name=mRNA_S-dermatodea_contig10224.162.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4238bp|location=Sequence derived from alignment at S-dermatodea_contig10224:3745..7982- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10224:3745..7982- >mRNA_S-dermatodea_contig10224.162.1 ID=mRNA_S-dermatodea_contig10224.162.1|Name=mRNA_S-dermatodea_contig10224.162.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3084bp|location=Sequence derived from alignment at S-dermatodea_contig10224:3745..7982- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |