mRNA_S-dermatodea_contig10222.160.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10222.160.1
Unique NamemRNA_S-dermatodea_contig10222.160.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10222.160.1 vs. uniprot
Match: D7FYI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-11
Identity = 59/146 (40.41%), Postives = 83/146 (56.85%), Query Frame = 1 
Query:    1 RRSTAGIRIRAV-----VGGDXXXXXXXXXXSGTVDTPAEQGNAAKR-----QREAEVMGQE---PNITSIPTKEEVQEALAKKLKACDERELELHSVIKEAKAKLEENSEARKAAIAGSNAQILAVIARREAYASHCEQLAAEAR 399
            RRS AG+R+  V     +G D          +    T   +G  A R       E E  G     P+++ + TK+EVQ+ALA KL+ACDERE EL+ VI  A A LEEN + RKAA+A S  Q+L++IA+REA A++ E+ + + R
Sbjct:  264 RRSGAGVRVSPVGSGGRLGEDSSAGGNGERKAAKPSTAKNRGGVAARVGAPPPGEEEARGSSEGPPSMSDLATKDEVQQALAWKLRACDERESELNGVIARANAALEENDDRRKAAVAESERQLLSIIAQREAKAAYWEKASRDPR 409
[Close]
BLAST of mRNA_S-dermatodea_contig10222.160.1 vs. uniprot
Match: A0A6H5KZY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.920e-7
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:  157 PNITSIPTKEEVQEALAKKLKACDERELELHSVIKEAKAKLEENSEARKAAIAGS----NAQILAVIARREAYASHCEQLAAEARAQNISDRESL 429
            P+++ + TK+EVQ+ALA KL+ACDERE EL+ VI  A A LEEN++ RKA    S    ++   +  + R    +   QLAA+ARA+N SDR SL
Sbjct:  494 PSMSDLATKDEVQQALAWKLRACDERESELNGVIASANAALEENNDRRKARRRRSPRVRSSSCRSSRSERPRRPTGKRQLAAQARAENTSDRLSL 588
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10222.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYI9_ECTSI1.060e-1140.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZY4_9PHAE5.920e-747.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10222contigS-dermatodea_contig10222:2527..5351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1032
Cds size1029
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10222.160.1prot_S-dermatodea_contig10222.160.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10222 2529..5351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.8076046-CDS-S-dermatodea_contig10222:2528..31761622924145.8076046-CDS-S-dermatodea_contig10222:2528..3176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 2529..3176 -
1694079048.9300723-CDS-S-dermatodea_contig10222:2528..31761694079048.9300723-CDS-S-dermatodea_contig10222:2528..3176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 2529..3176 -
1622924145.819231-CDS-S-dermatodea_contig10222:3477..35551622924145.819231-CDS-S-dermatodea_contig10222:3477..3555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 3478..3555 -
1694079048.9395425-CDS-S-dermatodea_contig10222:3477..35551694079048.9395425-CDS-S-dermatodea_contig10222:3477..3555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 3478..3555 -
1622924145.8311217-CDS-S-dermatodea_contig10222:3859..39311622924145.8311217-CDS-S-dermatodea_contig10222:3859..3931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 3860..3931 -
1694079048.9489095-CDS-S-dermatodea_contig10222:3859..39311694079048.9489095-CDS-S-dermatodea_contig10222:3859..3931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 3860..3931 -
1622924145.843304-CDS-S-dermatodea_contig10222:4601..46911622924145.843304-CDS-S-dermatodea_contig10222:4601..4691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 4602..4691 -
1694079048.9582603-CDS-S-dermatodea_contig10222:4601..46911694079048.9582603-CDS-S-dermatodea_contig10222:4601..4691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 4602..4691 -
1622924145.8569689-CDS-S-dermatodea_contig10222:5210..53511622924145.8569689-CDS-S-dermatodea_contig10222:5210..5351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 5211..5351 -
1694079048.968484-CDS-S-dermatodea_contig10222:5210..53511694079048.968484-CDS-S-dermatodea_contig10222:5210..5351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10222 5211..5351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10222.160.1

>prot_S-dermatodea_contig10222.160.1 ID=prot_S-dermatodea_contig10222.160.1|Name=mRNA_S-dermatodea_contig10222.160.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=343bp
RRSTAGIRIRAVVGGDGDGNGGGGSSSGTVDTPAEQGNAAKRQREAEVMG
QEPNITSIPTKEEVQEALAKKLKACDERELELHSVIKEAKAKLEENSEAR
KAAIAGSNAQILAVIARREAYASHCEQLAAEARAQNISDRESLAKVLVPS
AGVTEPPQPTVAQTASYEPPAGEPHEASASSRNNQANAGPPNVPPERGGP
SNPGGAAGGSAPVPDASTTAMLQQNTWTPVGNGGTPTNPGGLAGGSTPPT
AAPSFVQPSAPQFLHRQSMLDQGSPGMAGGTKMTSRAAATLTAQAQAPTE
ARGPAVWGQAGMQQDESRAPAGFPDRALAPAQGAAKGVFPLAA
back to top

mRNA from alignment at S-dermatodea_contig10222:2527..5351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10222.160.1 ID=mRNA_S-dermatodea_contig10222.160.1|Name=mRNA_S-dermatodea_contig10222.160.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2825bp|location=Sequence derived from alignment at S-dermatodea_contig10222:2527..5351- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAGGTCTACCGCGGGCATCCGCATCCGTGCCGTCGTCGGCGGTGATGG
CGACGGCAATGGCGGTGGTGGTTCCAGCAGTGGTACGGTGGATACACCCG
CGGAGCAGGGCAATGCAGCTAAACGTCAACGTGAAGCAGAGGTACGTCGC
CGTGACGATTGGCACAATGCTAGAAAGAGCGCTCTTTTCTATGAGCGGCA
GGCGTTCAAAAACATGCCCATTGCTCTTCACGGGCGGGAGCTGAGCTGGA
GCAAGACTACCGGATGCTGTTGAGCCAATGCATGCTGGGATATGTATAGC
CGTATTGAGGTCGTCTCGAACGCAACGATTCAGTAGTAGCTGACCGGTCC
TTGGATATACCAAACCATCGCCGTTTATGCTGTGTCTACCTTGATGATGT
AGCTGATCAAAACGCAGCAACTTGTCGCCCGCTCTTCACAGCCTCTCTCG
GAATGGCAGAATTTTATCGCGATGATGTTGGACCTGTTCGCGACGATTGC
CATCACATCTTCGTCAGAAGACCTGGGTTGGGCTTGCATTAGTTTCCATC
GCCCTCTCGAACCATTGTTTCCGGCAACGGTAGTCGACGACAATCGGTGC
GCAACGTATGGGGATCGTCCCTTTCATACCTCGCGCGCACCTTAACGCCG
CTTGCTGAAGGTAATGGGACAGGAGCCGAACATAACTTCCATCCCCACTA
AAGAGGAAGTGCAAGAAGCTTTGGCGAAGAAGCTGAAGGCATGCGACGAG
GCAAGTCGAGATGGGAGATCCGGGGATAGACATCGTACACATTTCCCTGG
TTCCTTGTTTAGTTTCCGTTTGGGTTTCTTTATTGCGCTCCTTTTGTTAT
TTCCCCTTCCTTTCCTGGTGGCATCGTTGTTGGCCGTGGTTTGAATGGGG
AGGCGATGCTGGGTCTCCCCCCGAGAGAGGCAACGGTCAATTCCGAGCCC
TGTACTGGCGTAAAATGTTTCATCTCTCTTGTGCTTAACAACTCAATTAG
ACGTAGAGGTAGACTTGATTTGGTGTATCCCCTTTGGTGTTTGCGGATGT
TATCGCGGGTCGTCGAATTTTGCCGATCGGCTATACGTGTGAAAATACAA
GTACTGTACAAGTATACCAATTAAACGAATTAATTAGTCACAGTTATCGC
ATGCCGTCGAGTTTTGTTTTGCTGGGTTTATCGATACGATGACGGTTAGG
CACATACCTTGTAACCCAAGACCGCGGAACGCGATTCGCTCTGAGAGCGC
TCACTAGTTTATTTTGCGTAGATATCATCATATCCTGTGAAGCTCCGCTG
GTTGTGCACCAATTTCACCCACGGTTGGTTTCCTCTCAGATAATGCAATC
AGGATTATCGCGGCTTTGCACTGTTGTGGCTGACTGTACGTTGCATTTTC
GTTTGCTTTATTGCGTGCAGCGGGAGTTGGAGCTCCACAGCGTCATCAAG
GAAGCAAAAGCCAAGTTGGAGGAGAACAGCGAGGCGAGGAAGGCGAGTCA
ATGGTCTATGTTGTCACGCGATTTTATTCGAGCCCCTAGTTTACACCCCA
ACTCATCCGTACCACTAGAATAGCACCGAGTCAGCTTTCCGAGGAATTTA
GTATTCACGGCGTTGCTCTCGTGACCAACGGTGCCACTCGTTCGGATCGA
ACAGCTTTGCGTGTCTTGGTAGCGTTCTGAGCTTGCGTCGTGAACGCAAG
AACTCGATAGAGCGTCCTTTCGTAAAGGGTCACAAAAGCTCTGTCCTTGT
ATGTATTTTCCCGCTTCCCTTTCCCTGTTTTCTTGCCTTATTTCAGGCGG
CCATCGCTGGCAGCAACGCTCAAATTCTTGCCGTCATCGCGAGGCGCGAG
GCATACGCTTCCCATTGCGAACAGGTGGGTGCTTCCACCGGAAACATACA
TGCGTGATAGGCCATTGACAGTGGGCTATACCTCAGGAAAACATACTCTA
CTCTTGTAAACGTGCGTGCCTAAGCTGCCCATCCTGTCTTACCACAACGG
TCGAAGGTATGTTGCACAGTGATTCCAACATTGCTTTTGTGTTGTAGATA
GACAGACCTCCACCCTCGGTTATGGAAGTGCGCATGTCTAAGGACATTGT
TCGATCGCTATAGACCCTTTCTGCTACATCCCCTCTTTTCCCGCCCGCCT
CACTCGCTGATTATCTGCCGAGTAGCTTGCGGCAGAAGCGAGGGCCCAGA
ATATATCGGATAGGGAGAGCTTGGCCAAGGTATTGGTTCCCTCCGCTGGA
GTGACCGAGCCCCCTCAACCGACCGTGGCACAAACAGCTTCGTACGAGCC
GCCAGCCGGAGAACCCCACGAGGCTAGTGCTTCTTCGAGGAACAATCAAG
CGAATGCAGGGCCCCCGAATGTACCACCCGAGAGAGGAGGGCCCAGCAAC
CCAGGAGGAGCGGCCGGGGGCTCAGCCCCTGTACCAGATGCCTCTACGAC
GGCCATGCTTCAGCAAAACACGTGGACGCCGGTCGGGAACGGTGGGACGC
CAACCAACCCAGGAGGACTAGCAGGGGGGTCTACACCTCCTACTGCTGCA
CCCAGTTTTGTGCAGCCCAGTGCTCCCCAGTTTCTACACCGGCAGAGCAT
GCTTGACCAAGGGTCGCCAGGAATGGCAGGGGGTACGAAAATGACGTCGC
GCGCCGCGGCGACTCTAACTGCGCAAGCACAGGCGCCGACTGAAGCGAGG
GGGCCGGCTGTGTGGGGTCAGGCGGGCATGCAGCAGGACGAAAGTAGAGC
ACCCGCTGGATTCCCAGACAGAGCACTTGCGCCGGCGCAAGGGGCCGCGA
AGGGTGTGTTCCCGCTCGCCGCGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10222:2527..5351-

>mRNA_S-dermatodea_contig10222.160.1 ID=mRNA_S-dermatodea_contig10222.160.1|Name=mRNA_S-dermatodea_contig10222.160.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at S-dermatodea_contig10222:2527..5351- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAGGTCTACCGCGGGCATCCGCATCCGTGCCGTCGTCGGCGGTGATGG
CGACGGCAATGGCGGTGGTGGTTCCAGCAGTGGTACGGTGGATACACCCG
CGGAGCAGGGCAATGCAGCTAAACGTCAACGTGAAGCAGAGCGCAGGTCT
ACCGCGGGCATCCGCATCCGTGCCGTCGTCGGCGGTGATGGCGACGGCAA
TGGCGGTGGTGGTTCCAGCAGTGGTACGGTGGATACACCCGCGGAGCAGG
GCAATGCAGCTAAACGTCAACGTGAAGCAGAGGTAATGGGACAGGAGCCG
AACATAACTTCCATCCCCACTAAAGAGGAAGTGCAAGAAGCTTTGGCGAA
GAAGCTGAAGGCATGCGACGAGGTAATGGGACAGGAGCCGAACATAACTT
CCATCCCCACTAAAGAGGAAGTGCAAGAAGCTTTGGCGAAGAAGCTGAAG
GCATGCGACGAGCGGGAGTTGGAGCTCCACAGCGTCATCAAGGAAGCAAA
AGCCAAGTTGGAGGAGAACAGCGAGGCGAGGAAGCGGGAGTTGGAGCTCC
ACAGCGTCATCAAGGAAGCAAAAGCCAAGTTGGAGGAGAACAGCGAGGCG
AGGAAGGCGGCCATCGCTGGCAGCAACGCTCAAATTCTTGCCGTCATCGC
GAGGCGCGAGGCATACGCTTCCCATTGCGAACAGGCGGCCATCGCTGGCA
GCAACGCTCAAATTCTTGCCGTCATCGCGAGGCGCGAGGCATACGCTTCC
CATTGCGAACAGCTTGCGGCAGAAGCGAGGGCCCAGAATATATCGGATAG
GGAGAGCTTGGCCAAGGTATTGGTTCCCTCCGCTGGAGTGACCGAGCCCC
CTCAACCGACCGTGGCACAAACAGCTTCGTACGAGCCGCCAGCCGGAGAA
CCCCACGAGGCTAGTGCTTCTTCGAGGAACAATCAAGCGAATGCAGGGCC
CCCGAATGTACCACCCGAGAGAGGAGGGCCCAGCAACCCAGGAGGAGCGG
CCGGGGGCTCAGCCCCTGTACCAGATGCCTCTACGACGGCCATGCTTCAG
CAAAACACGTGGACGCCGGTCGGGAACGGTGGGACGCCAACCAACCCAGG
AGGACTAGCAGGGGGGTCTACACCTCCTACTGCTGCACCCAGTTTTGTGC
AGCCCAGTGCTCCCCAGTTTCTACACCGGCAGAGCATGCTTGACCAAGGG
TCGCCAGGAATGGCAGGGGGTACGAAAATGACGTCGCGCGCCGCGGCGAC
TCTAACTGCGCAAGCACAGGCGCCGACTGAAGCGAGGGGGCCGGCTGTGT
GGGGTCAGGCGGGCATGCAGCAGGACGAAAGTAGAGCACCCGCTGGATTC
CCAGACAGAGCACTTGCGCCGGCGCAAGGGGCCGCGAAGGGTGTGTTCCC
GCTCGCCGCGCTTGCGGCAGAAGCGAGGGCCCAGAATATATCGGATAGGG
AGAGCTTGGCCAAGGTATTGGTTCCCTCCGCTGGAGTGACCGAGCCCCCT
CAACCGACCGTGGCACAAACAGCTTCGTACGAGCCGCCAGCCGGAGAACC
CCACGAGGCTAGTGCTTCTTCGAGGAACAATCAAGCGAATGCAGGGCCCC
CGAATGTACCACCCGAGAGAGGAGGGCCCAGCAACCCAGGAGGAGCGGCC
GGGGGCTCAGCCCCTGTACCAGATGCCTCTACGACGGCCATGCTTCAGCA
AAACACGTGGACGCCGGTCGGGAACGGTGGGACGCCAACCAACCCAGGAG
GACTAGCAGGGGGGTCTACACCTCCTACTGCTGCACCCAGTTTTGTGCAG
CCCAGTGCTCCCCAGTTTCTACACCGGCAGAGCATGCTTGACCAAGGGTC
GCCAGGAATGGCAGGGGGTACGAAAATGACGTCGCGCGCCGCGGCGACTC
TAACTGCGCAAGCACAGGCGCCGACTGAAGCGAGGGGGCCGGCTGTGTGG
GGTCAGGCGGGCATGCAGCAGGACGAAAGTAGAGCACCCGCTGGATTCCC
AGACAGAGCACTTGCGCCGGCGCAAGGGGCCGCGAAGGGTGTGTTCCCGC
TCGCCGCG
back to top