mRNA_S-dermatodea_contig1022.159.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A6H5KAS1_9PHAE (VAS1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS1_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.780e-53 Identity = 80/105 (76.19%), Postives = 94/105 (89.52%), Query Frame = 3
Query: 3 DDGCDWARSKVASLSKCREAMWSAVKDMGGVKGKGAFYFLVPVPTEEDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALANESA 317
+ G DW +SKV+SLS+CR AMW+AVKDMGGV GKG+FYFLVPVP EED A+DVLA+RWGVLTTPGRAFGAPGH+RVSYGSLPEE+CLPAI L EGL+ L+NE++
Sbjct: 212 EGGVDWVKSKVSSLSRCRSAMWAAVKDMGGVMGKGSFYFLVPVPVEEDRAVDVLARRWGVLTTPGRAFGAPGHIRVSYGSLPEEQCLPAIRSLAEGLRELSNEAS 316
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: D7G2X8_ECTSI (Nicotianamide aminotransferase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X8_ECTSI) HSP 1 Score: 180 bits (457), Expect = 5.510e-53 Identity = 80/105 (76.19%), Postives = 94/105 (89.52%), Query Frame = 3
Query: 3 DDGCDWARSKVASLSKCREAMWSAVKDMGGVKGKGAFYFLVPVPTEEDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALANESA 317
+ G DW +SKV+SLS+CR AMW+AVKDMGGV GKG+FYFLVPVP EED A+DVLA+RWGVLTTPGRAFGAPGH+RVSYGSLPEE+CLPAI L EGL+ L+NE++
Sbjct: 256 EGGVDWVKSKVSSLSRCRSAMWAAVKDMGGVMGKGSFYFLVPVPVEEDRAVDVLARRWGVLTTPGRAFGAPGHIRVSYGSLPEEQCLPAIRSLAEGLRELSNETS 360
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A835YRY9_9STRA (Nicotianamide aminotransferase A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY9_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.150e-31 Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 3
Query: 18 WARSKVASLSKCREAMWSAVKDMGGVKGKGAFYFLVPVP---TEEDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALANES 314
W + +VA+L CREAMWS V G V+ GAFYF VP+P ED AI++LA + GVL TPG AFGAPGH+RVSYGSLPE ECL AI RL GL++LA +
Sbjct: 295 WVKQQVAALHTCREAMWSQVSPYGTVRTNGAFYFFVPLPGGPASEDAAIELLAMQCGVLVTPGSAFGAPGHIRVSYGSLPEPECLEAIARLGRGLRSLAQRA 396
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A7S2SSD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSD5_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.140e-30 Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 3
Query: 18 WARSKVASLSKCREAMWSAVKDMGGVKGKGAFYFLVPVP----TEEDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALANE 311
W + +V L+ CR+A+W AVK G VK GAFYF VP+P + E EA+ VLA+++ VL TPG AFG PGH RVSYGSLP ++C A RL+EGL+ L E
Sbjct: 84 WVQQQVKELAPCRQALWDAVKHTGAVKTPGAFYFFVPLPIPWRSRESEALQVLAEQFHVLVTPGSAFGVPGHFRVSYGSLPNQDCNDAARRLQEGLEFLQGE 185
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A7S3YFX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFX8_HETAK) HSP 1 Score: 107 bits (267), Expect = 2.550e-27 Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 3
Query: 18 WARSKVASLSKCREAMWSAVKDMGG--VKGKGAFYFLVPVP--TEEDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALANESAPPV*TV 335
W S+V L++CR A W+A+ +G + +GAFYFL +P +++ EA+ LA+ GV+ PG AFGAPGH+R+SYGSLPE CL A+ +L+EGL+AL S V
Sbjct: 1 WEASRVGGLARCRAAAWAALAPLGTRTARARGAFYFLARLPPGSDDTEAVGFLAENHGVMVLPGSAFGAPGHLRISYGSLPEARCLAALGQLKEGLKALQKRSGSSAGVV 110
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A4D9CSE6_9STRA (Aminotran_1_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSE6_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.930e-22 Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 3
Query: 9 GCDWARSKVASLSKCREAMWSAVKDM--GGVKGKGAFYFLVPVP--TEEDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALANESAPPV 326
G +W + +VA L+ CRE +W+ + G V+ +GAFYFL +P E EA+ LA + VL TPG AFGAPG +R+SYGSLP EC+ A+ RL GL AL E V
Sbjct: 258 GREWVQRQVAGLTDCRERLWAVLSKHCPGSVRTEGAFYFLAQLPPHVSEAEAVHRLATEYRVLCTPGEAFGAPGTLRLSYGSLPPAECIDALGRLDAGLAALIKEGTDKV 367
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: M4CH79_BRARP (Aminotran_1_2 domain-containing protein n=10 Tax=Brassiceae TaxID=981071 RepID=M4CH79_BRARP) HSP 1 Score: 80.1 bits (196), Expect = 8.520e-15 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 3
Query: 3 DDGCDWARSKVASLSKCREAMWSAVKDMG--GVKG-KGAFYFLVPVPTEEDEAIDV---LAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALAN 308
++G W R +V L K RE + A++ +G VKG +GA Y +P E + V LA R GV+ PG A G+PGHVRVS+G L EEE A RLR+GL+ L +
Sbjct: 282 EEGGGWVRERVKGLVKNREIVKEALEPLGKENVKGGEGAIYLWAKLPEEHRDDFKVVRWLAHRHGVVVVPGCACGSPGHVRVSFGGLKEEETREAAERLRKGLEELVH 389
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A6D2HW12_9BRAS (Aminotran_1_2 domain-containing protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2HW12_9BRAS) HSP 1 Score: 80.1 bits (196), Expect = 9.290e-15 Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 3
Query: 3 DDGCDWARSKVASLSKCREAMWSAVKDMG--GVKG-KGAFYFLVPVPTE---EDEAIDVLAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQAL 302
++G W +V L K RE + A++ +G VKG +GA Y V +P E E + + LA R GV+ PGRA G+PGH+R+S+G L E+E A RLR+GL+ L
Sbjct: 304 EEGAGWVTERVKGLVKNREIVREALEPLGKENVKGGEGAIYMWVKLPDEFRDEFKVVRWLAHRHGVVVIPGRASGSPGHLRISFGGLQEDEMRAAAERLRKGLEEL 409
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: A0A087HJY0_ARAAL (Aminotran_1_2 domain-containing protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087HJY0_ARAAL) HSP 1 Score: 78.6 bits (192), Expect = 3.030e-14 Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 3
Query: 3 DDGCDWARSKVASLSKCREAMWSAVKDMG--GVKG-KGAFYFLVPVPTEEDEAIDV---LAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALAN 308
++G W +V L K RE + A+ +G VKG +GA Y +P +A V LA R GV+ PG A G PGH+RVS+G L EEE A RLR+GL+ L N
Sbjct: 282 EEGAGWITERVKGLVKNREIVKEALTPLGKENVKGGEGAIYLWAKLPEGHRDAFKVVRWLAHRHGVVVIPGGASGCPGHIRVSFGGLKEEEMRAAAERLRKGLEELVN 389
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Match: V4JPJ4_EUTSA (Aminotran_1_2 domain-containing protein n=15 Tax=Brassicaceae TaxID=3700 RepID=V4JPJ4_EUTSA) HSP 1 Score: 77.4 bits (189), Expect = 7.820e-14 Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 3
Query: 3 DDGCDWARSKVASLSKCREAMWSAVKDMG--GVKG-KGAFYFLVPVPTEEDEAIDV---LAKRWGVLTTPGRAFGAPGHVRVSYGSLPEEECLPAIHRLREGLQALAN 308
++G W +V L K RE + A++ +G VKG +GA Y +P E + V LA R GV+ PG A G+PGHVRVS+G L EEE A RLR+GL+ L +
Sbjct: 282 EEGAGWVVERVKGLVKNREIVKEALEPLGKENVKGGEGAIYLWAKLPEEHRDDFRVVRWLAHRHGVVVIPGCASGSPGHVRVSFGGLQEEEMRAAAERLRKGLEELVH 389 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1022.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1022.159.1 >prot_S-dermatodea_contig1022.159.1 ID=prot_S-dermatodea_contig1022.159.1|Name=mRNA_S-dermatodea_contig1022.159.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp MWSAVKDMGGVKGKGAFYFLVPVPTEEDEAIDVLAKRWGVLTTPGRAFGAback to top mRNA from alignment at S-dermatodea_contig1022:3300..4764+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1022.159.1 ID=mRNA_S-dermatodea_contig1022.159.1|Name=mRNA_S-dermatodea_contig1022.159.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1465bp|location=Sequence derived from alignment at S-dermatodea_contig1022:3300..4764+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1022:3300..4764+ >mRNA_S-dermatodea_contig1022.159.1 ID=mRNA_S-dermatodea_contig1022.159.1|Name=mRNA_S-dermatodea_contig1022.159.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig1022:3300..4764+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |