mRNA_S-dermatodea_contig10217.158.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10217.158.1
Unique NamemRNA_S-dermatodea_contig10217.158.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.980e-24
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:  187 VDDTEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTDPLHCNYFGLGQICRGCGDXXXXXPCP 396
            VDD E  CSVC +L+D +   LA+ + GGK +VCDP+CLDGVTDPLHCNYFGLGQICRGCG+     PCP
Sbjct: 1309 VDDDE--CSVCSNLTDEQVAVLASYDNGGKQVVCDPSCLDGVTDPLHCNYFGLGQICRGCGECSLCEPCP 1376
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.100e-23
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:  187 VDDTEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTDPLHCNYFGLGQICRGCGD 372
            VDD E  CSVC +L+D +   LA+ + GGK +VCDPTCLDGVTDPLHCNYFGLGQICRGCGD
Sbjct:   10 VDDDE--CSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGD 69
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.150e-22
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:  187 VDDTEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTDPLHCNYFGLGQICRGCGD 372
            VDD E  CSVC +L+D +   LA+ + GGK +VCDPTCLDGVTDPLHCNYFGLGQICRGCGD
Sbjct:  426 VDDDE--CSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGD 485
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-20
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  196 TEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTDPLHCNYFGLGQICRGCGDXXXXXPCP 396
            T+ + ++C D+S A+EEALA  +GGGKVIVCDPTCL G  D  HCNYFGLGQ+CRGCG      PCP
Sbjct:  313 TDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGG--DISHCNYFGLGQLCRGCGSCSECVPCP 377
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.830e-20
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  196 TEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTDPLHCNYFGLGQICRGCGDXXXXXPCP 396
            TE + ++C D+S A+EEALA  +GGGKVIVCDPTCL    D  HCNYFGLGQ+CRGCG      PCP
Sbjct:  348 TEAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLG--EDISHCNYFGLGQLCRGCGSCSGCDPCP 412
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.370e-16
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  193 DTEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTDPLHCNYFGLGQICRGCGDXXXXXPC 393
            DT  DC+ C +LS+ +  ALAA  GG K +VCD  CLDGV D L C+YFGLGQICRGCGD      C
Sbjct: 1175 DTTSDCAACSNLSEVQMLALAAHPGGAKRVVCDSDCLDGV-DVLDCDYFGLGQICRGCGDCDGCEAC 1240
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BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 4.350e-5
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  214 VCLDLSDAEEEALAAEEGGGKVIVCDPTCLDGVTD-PLHCNYFGLGQICRGC 366
            +   LSDA +E L+  +   K +  +P C++G +  P+HCNY GLGQ CRGC
Sbjct:   26 IVSSLSDAAQEQLSMYD---KDLYLEPDCVNGASPMPVHCNYMGLGQECRGC 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10217.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FTU6_ECTSI4.980e-2465.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V0_9PHAE1.100e-2372.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L314_9PHAE1.150e-2272.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTW1_9PHAE1.080e-2062.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4W7_ECTSI3.830e-2062.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI25_ECTSI4.370e-1658.21Mucin 17-like protein n=1 Tax=Ectocarpus siliculos... [more]
D8LDU5_ECTSI4.350e-544.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10217contigS-dermatodea_contig10217:5525..6813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue7.8e-22
Seed eggNOG ortholog2880.D7FTU6
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.6348605-CDS-S-dermatodea_contig10217:5524..55891622924145.6348605-CDS-S-dermatodea_contig10217:5524..5589Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10217 5525..5589 -
1694079048.8212695-CDS-S-dermatodea_contig10217:5524..55891694079048.8212695-CDS-S-dermatodea_contig10217:5524..5589Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10217 5525..5589 -
1622924145.6442237-CDS-S-dermatodea_contig10217:6479..68131622924145.6442237-CDS-S-dermatodea_contig10217:6479..6813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10217 6480..6813 -
1694079048.8325279-CDS-S-dermatodea_contig10217:6479..68131694079048.8325279-CDS-S-dermatodea_contig10217:6479..6813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10217 6480..6813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10217.158.1prot_S-dermatodea_contig10217.158.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10217 5525..6813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10217.158.1

>prot_S-dermatodea_contig10217.158.1 ID=prot_S-dermatodea_contig10217.158.1|Name=mRNA_S-dermatodea_contig10217.158.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
FGLGQICRGCGDCSDCEPCPDAPTPAPELAATDAPVSSATPEPATPAPVA
PTPATPAAEDDDVDDTEYDCSVCLDLSDAEEEALAAEEGGGKVIVCDPTC
LDGVTDPLHCNYFGLGQICRGCGDCDDCEPCP*
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mRNA from alignment at S-dermatodea_contig10217:5525..6813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10217.158.1 ID=mRNA_S-dermatodea_contig10217.158.1|Name=mRNA_S-dermatodea_contig10217.158.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1289bp|location=Sequence derived from alignment at S-dermatodea_contig10217:5525..6813- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGCCTGGGCCAAATCTGCCGTGGCTGCGGTGACTGCTCCGACTGCGA
GCCGTGCCCTGACGCGCCCACTCCGGCTCCCGAGCTCGCCGCCACCGATG
CCCCTGTTTCGTCGGCCACCCCGGAGCCCGCCACGCCCGCGCCTGTTGCC
CCTACCCCGGCGACGCCTGCGGCGGAAGACGACGACGTCGATGACACGGA
GTACGACTGCTCGGTATGCTTGGACCTGTCGGATGCAGAGGAGGAGGCCC
TGGCCGCGGAAGAGGGCGGAGGGAAAGTGATCGTGTGCGACCCGACCTGC
CTCGATGGAGTGACCGACCCCTTGCACTGCAACTGTGAGTTCCACTAAGG
AAGCGGTGGTGTTTGGCTGTTGATGATACATGATATAGTCGATTTTTTGT
GTGTTTTGTGTGTGTTTGCTAAAATGCTTATCTTGGTGTGTGAGTGAACG
TTGGCGGAGCGTTTCTCGGGACTTTGCATCCTTCATTTTTCATTGTTTTT
GCTTTGCACACATAGTAATACTAGTATGATAGACCGGCTTTTCCGAGGTC
CGTCTGTGGTCACAAGGATCATCCTATCTCTCTTATCTTATCCCCGGTAT
TTTCTTACCTCGGGTTTTCATCGCGAATGCATTGGGTTCGGCACTCCCGC
AGCTCGCTGACGTATCGGATTTTGCTTACTCAACGCTGTCGTCGCGTTTT
CCGCGGCGGAGGCAGAGAAAATATGTAATATCGACTGCCCGGATTCGAAC
CCGGGTCTTCCGCCATGCTGGACGTTCGTGTCAAACCAGTGCAACAATGC
TTTGGACGTTTCGGTCATGCGTGTGTCTTAATACTGTCGTTTTTCTCGTC
AAAACAGTACATTCAAGCGTTCGAAAAAAGGAGCTGGGGGTATTTTAGCT
ACCTTTCCCCATTCGCGGCACACCTCTGACCGCCCCTATATATATACAAG
TACATGTATGTTGTGTGTACAGTATTCAGGTGAGATGCACCTCTCTTCGT
ACGGTAACGCGGCCAGGGACGCTCCCCGCTCACGGGCTGCGCGATCCAAA
CATGCAACAAGAACCCGCCACTCCCGCCGCCATATAATTTCTGTATAATA
CCATCCGCCGATACAAAACAAACTAGAGATTGAAAAAACACTTCCCCCCC
CCCCTTGCCCGCTCCCCGCACCCCTTGTCTCCGTCCCGCAACCGCTACGT
ACTACTCCATCCCATTATCGATAGACTTCGGCCTGGGGCAGATCTGCCGT
GGCTGCGGTGACTGCGACGACTGCGAACCGTGCCCTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10217:5525..6813-

>mRNA_S-dermatodea_contig10217.158.1 ID=mRNA_S-dermatodea_contig10217.158.1|Name=mRNA_S-dermatodea_contig10217.158.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig10217:5525..6813- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGCCTGGGCCAAATCTGCCGTGGCTGCGGTGACTGCTCCGACTGCGA
GCCGTGCCCTGACGCGCCCACTCCGGCTCCCGAGCTCGCCGCCACCGATG
CCCCTGTTTCGTCGGCCACCCCGGAGCCCGCCACGCCCGCGCCTGTTGCC
CCTACCCCGGCGACGCCTGCGGCGGAAGACGACGACGTCGATGACACGGA
GTACGACTGCTCGGTATGCTTGGACCTGTCGGATGCAGAGGAGGAGGCCC
TGGCCGCGGAAGAGGGCGGAGGGAAAGTGATCGTGTGCGACCCGACCTGC
CTCGATGGAGTGACCGACCCCTTGCACTGCAACTTTCGGCCTGGGCCAAA
TCTGCCGTGGCTGCGGTGACTGCTCCGACTGCGAGCCGTGCCCTGACGCG
CCCACTCCGGCTCCCGAGCTCGCCGCCACCGATGCCCCTGTTTCGTCGGC
CACCCCGGAGCCCGCCACGCCCGCGCCTGTTGCCCCTACCCCGGCGACGC
CTGCGGCGGAAGACGACGACGTCGATGACACGGAGTACGACTGCTCGGTA
TGCTTGGACCTGTCGGATGCAGAGGAGGAGGCCCTGGCCGCGGAAGAGGG
CGGAGGGAAAGTGATCGTGTGCGACCCGACCTGCCTCGATGGAGTGACCG
ACCCCTTGCACTGCAACTACTTCGGCCTGGGGCAGATCTGCCGTGGCTGC
GGTGACTGCGACGACTGCGAACCGTGCCCTTAAACTTCGGCCTGGGGCAG
ATCTGCCGTGGCTGCGGTGACTGCGACGACTGCGAACCGTGCCCTTAA
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