mRNA_S-dermatodea_contig10217.157.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10217.157.1
Unique NamemRNA_S-dermatodea_contig10217.157.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10217.157.1 vs. uniprot
Match: D8LKR5_ECTSI (Beta-Casp domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.300e-18
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 3 
Query:   33 DGDERGVILAMALMLIRQALQDTFGKGGVSVGET----------------------DGEVTLSTDGARARLRVVVAPRPSPGSSSSPWGGDGGSMAGGAAAWKCEVVQCDRESLRAQVTLMLERLRVAVSRS 362
            +G +   +LA AL+LIR A+QDTFGKG V+V                           E+ + TDGA ARL+V V P  S   S     G G S  GG+A W+CEVV+C R+SL +Q+++++ERLR AVSRS
Sbjct:  626 EGSDWSSMLAAALLLIRHAMQDTFGKGAVTVTSKHKKKPXXXXAAAGKQASPDKPLSAEIKIDTDGAVARLQVYVVPPASTAVS-----GSGESGGGGSAGWRCEVVECTRDSLGSQISMLVERLRAAVSRS 752
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BLAST of mRNA_S-dermatodea_contig10217.157.1 vs. uniprot
Match: A0A6H5L755_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L755_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.560e-15
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3 
Query:   33 DGDERGVILAMALMLIRQALQDTFGKGGVSVGET------------------------DGEVTLSTDGARARLRVVVAPRPSPGSSSSPWGGDGGSMAGGAAAWKCEVVQCDRESLRAQVTLMLERLRVAVSRS 362
            +G +   +LA AL+L+R A+QDTFGKG V+V                             E+ + T GA  R+RV V P   P S++    G+ G    G+A W+CEVV+C R+SL +Q+++++ERLR AVSRS
Sbjct:  825 EGSDWSSMLAAALLLVRHAMQDTFGKGAVTVXXXXXXXXXXXXXXXXAGKQTSPDKPLSAEIKIDTGGAVVRVRVYVVP---PASTAVSGSGESGGR--GSAGWRCEVVECTRDSLGSQISMLVERLRAAVSRS 953
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10217.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKR5_ECTSI2.300e-1842.42Beta-Casp domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L755_9PHAE1.560e-1538.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10217contigS-dermatodea_contig10217:1003..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D8LKR5
KEGG koko:K14403
KEGG Pathwayko03015,map03015
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017091,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035925,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098787,GO:0098789,GO:1901360,GO:1901363
EggNOG free text desc.nuclease activity
EggNOG OGsCOG1236@1,KOG1137@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-07_004490.1
Exons1
Model size462
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10217.157.1prot_S-dermatodea_contig10217.157.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10217 1065..1367 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.6817546-UTR-S-dermatodea_contig10217:1002..10641622924145.6817546-UTR-S-dermatodea_contig10217:1002..1064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10217 1003..1064 +
1694079048.8428144-UTR-S-dermatodea_contig10217:1002..10641694079048.8428144-UTR-S-dermatodea_contig10217:1002..1064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10217 1003..1064 +
1622924145.7091784-UTR-S-dermatodea_contig10217:1367..14641622924145.7091784-UTR-S-dermatodea_contig10217:1367..1464Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10217 1368..1464 +
1694079048.8631706-UTR-S-dermatodea_contig10217:1367..14641694079048.8631706-UTR-S-dermatodea_contig10217:1367..1464Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10217 1368..1464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.693394-CDS-S-dermatodea_contig10217:1064..13671622924145.693394-CDS-S-dermatodea_contig10217:1064..1367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10217 1065..1367 +
1694079048.8545299-CDS-S-dermatodea_contig10217:1064..13671694079048.8545299-CDS-S-dermatodea_contig10217:1064..1367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10217 1065..1367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10217.157.1

>prot_S-dermatodea_contig10217.157.1 ID=prot_S-dermatodea_contig10217.157.1|Name=mRNA_S-dermatodea_contig10217.157.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MALMLIRQALQDTFGKGGVSVGETDGEVTLSTDGARARLRVVVAPRPSPG
SSSSPWGGDGGSMAGGAAAWKCEVVQCDRESLRAQVTLMLERLRVAVSRS
*
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mRNA from alignment at S-dermatodea_contig10217:1003..1464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10217.157.1 ID=mRNA_S-dermatodea_contig10217.157.1|Name=mRNA_S-dermatodea_contig10217.157.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig10217:1003..1464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGGGCGTCAGAAGGAGACGCCACGAGCGCGGATGGCGACGAGAGAGGC
GTTATCCTCGCCATGGCGCTCATGCTCATACGCCAGGCCCTACAGGATAC
CTTCGGGAAAGGGGGCGTCTCGGTTGGCGAGACGGATGGGGAGGTTACCC
TATCGACGGACGGAGCCCGCGCGAGGTTGCGGGTGGTAGTCGCCCCTCGT
CCCTCACCAGGATCGTCCTCGTCGCCGTGGGGAGGGGATGGTGGGTCGAT
GGCCGGGGGCGCGGCCGCGTGGAAGTGCGAGGTGGTGCAGTGCGATAGAG
AGTCGTTGCGGGCCCAGGTAACGCTCATGTTGGAGCGGCTCAGGGTGGCG
GTGTCGAGGAGCTGATGGTCCGAGGGAGGGGCTATACGGTAGGAGCTGAG
GGGGGAGTCAGAGAACGGGGGCTGTGGCGTCTATATGTATCGAGGTGTAC
GATGAAAAGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10217:1003..1464+

>mRNA_S-dermatodea_contig10217.157.1 ID=mRNA_S-dermatodea_contig10217.157.1|Name=mRNA_S-dermatodea_contig10217.157.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig10217:1003..1464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCTCATGCTCATACGCCAGGCCCTACAGGATACCTTCGGGAAAGG
GGGCGTCTCGGTTGGCGAGACGGATGGGGAGGTTACCCTATCGACGGACG
GAGCCCGCGCGAGGTTGCGGGTGGTAGTCGCCCCTCGTCCCTCACCAGGA
TCGTCCTCGTCGCCGTGGGGAGGGGATGGTGGGTCGATGGCCGGGGGCGC
GGCCGCGTGGAAGTGCGAGGTGGTGCAGTGCGATAGAGAGTCGTTGCGGG
CCCAGGTAACGCTCATGTTGGAGCGGCTCAGGGTGGCGGTGTCGAGGAGC
TGAATGGCGCTCATGCTCATACGCCAGGCCCTACAGGATACCTTCGGGAA
AGGGGGCGTCTCGGTTGGCGAGACGGATGGGGAGGTTACCCTATCGACGG
ACGGAGCCCGCGCGAGGTTGCGGGTGGTAGTCGCCCCTCGTCCCTCACCA
GGATCGTCCTCGTCGCCGTGGGGAGGGGATGGTGGGTCGATGGCCGGGGG
CGCGGCCGCGTGGAAGTGCGAGGTGGTGCAGTGCGATAGAGAGTCGTTGC
GGGCCCAGGTAACGCTCATGTTGGAGCGGCTCAGGGTGGCGGTGTCGAGG
AGCTGA
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