mRNA_S-dermatodea_contig10212.156.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10212.156.1
Unique NamemRNA_S-dermatodea_contig10212.156.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10212.156.1 vs. uniprot
Match: A0A6H5J6P9_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6P9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 6.240e-36
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MILRLNTGFVNNDTGIVRYSRRDIFWRYAKGWLIVDLLAAFPFTFIPGLGPDDTEGYHEIAYFLSLPKILRLYGLLTMAQENHRLHEGGFLAIRTLLSVIM 303
            +++ LNTGFV+  TG V YSR  I  RYAKG LIVDLLAA PFTF+PGLGP   +G HEIAY LSLPK+ ++Y L+TM  ENHRLHEG FLA+RTLL V+M
Sbjct:   78 VLVHLNTGFVDGTTGKVVYSRMAIGQRYAKGALIVDLLAALPFTFVPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGMFLAVRTLLCVVM 178
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BLAST of mRNA_S-dermatodea_contig10212.156.1 vs. uniprot
Match: D8LG26_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG26_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.440e-35
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MILRLNTGFVNNDTGIVRYSRRDIFWRYAKGWLIVDLLAAFPFTFIPGLGPDDTEGYHEIAYFLSLPKILRLYGLLTMAQENHRLHEGGFLAIRTLLSVIM 303
            +++ LNTGFV+   G V YSR  I  RYAK  LIVDLLAAFPFTFIPGLGP   +G HEIAY LSLPK+ ++Y L+TM  ENHRLHEG FLA+RTLLSV++
Sbjct:  288 VLVHLNTGFVDGTDGKVVYSRMAICRRYAKHALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVV 388
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BLAST of mRNA_S-dermatodea_contig10212.156.1 vs. uniprot
Match: A0A1R2AL77_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AL77_9CILI)

HSP 1 Score: 55.8 bits (133), Expect = 7.060e-7
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   31 NNDTGIVRYSRRDIFWRYAKGWLIVDLLAAFPFTFIPGLGPDDTEGYHEIAYFLSLPKILRL--YGLLTMAQENHRLHE 261
            N++ G +   R+ IF +YAKGW+++DL+  FPF  I   G   T G    A FL LPK+ RL  +  L    ++H  +E
Sbjct:  197 NDNQGNLITDRKQIFLKYAKGWMVIDLITWFPFDLIQQTGT--TSGGKTFARFLRLPKLYRLLRFSKLLKLMKSHTQNE 273
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10212.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J6P9_9PHAE6.240e-3666.34Cyclic nucleotide-binding domain-containing protei... [more]
D8LG26_ECTSI3.440e-3566.34Cyclic nucleotide-binding domain-containing protei... [more]
A0A1R2AL77_9CILI7.060e-737.97Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10212contigS-dermatodea_contig10212:4398..5587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.6e-30
Seed eggNOG ortholog2880.D8LG26
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.586756-CDS-S-dermatodea_contig10212:4397..44451622924145.586756-CDS-S-dermatodea_contig10212:4397..4445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 4398..4445 +
1694079048.7919376-CDS-S-dermatodea_contig10212:4397..44451694079048.7919376-CDS-S-dermatodea_contig10212:4397..4445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 4398..4445 +
1622924145.5988274-CDS-S-dermatodea_contig10212:5332..55871622924145.5988274-CDS-S-dermatodea_contig10212:5332..5587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 5333..5587 +
1694079048.810581-CDS-S-dermatodea_contig10212:5332..55871694079048.810581-CDS-S-dermatodea_contig10212:5332..5587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 5333..5587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10212.156.1prot_S-dermatodea_contig10212.156.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10212 4398..5587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10212.156.1

>prot_S-dermatodea_contig10212.156.1 ID=prot_S-dermatodea_contig10212.156.1|Name=mRNA_S-dermatodea_contig10212.156.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MILRLNTGFVNNDTGIVRYSRRDIFWRYAKGWLIVDLLAAFPFTFIPGLG
PDDTEGYHEIAYFLSLPKILRLYGLLTMAQENHRLHEGGFLAIRTLLSVI
M
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mRNA from alignment at S-dermatodea_contig10212:4398..5587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10212.156.1 ID=mRNA_S-dermatodea_contig10212.156.1|Name=mRNA_S-dermatodea_contig10212.156.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1190bp|location=Sequence derived from alignment at S-dermatodea_contig10212:4398..5587+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATACTTCGCCTTAACACCGGCTTTGTCAACAACGACACCGGCATCGT
AAGTTGTTTTTCGTCTGCCAGGGCCGTTGGTAGGCGGACGTGGCGGGGGT
TGTCTTTTGCTCATCGGGAGCTCAGTGTGTCTGCGTGTATCCTCCTGTAA
CATACTGCGACGCGTTTGACGCAAAGACTAAAATGCTTTGTAGGCTGTGC
CTTGGTTGACAATAGTGTCGAAATCCAGCCGCGACCCACCCCTCAAGAGT
AAATCCAGCCGCCACCTAGGCTAACTCGCTGGCACCGCAATGATGTGGGG
TACCGTGCTTACGGTCCCTGAAGTTCTACCTCGATGGGTTCCATGTACAA
ATTGAACCTTCGAAATGCCGTAGTCTTATTATAGCACAAAATTACCCTGT
TCTCCTGATTCACATCTTCGGTGGGGGTCAATCGGTCGTTTTAGCGTGGC
GGCCACAATCAAGCAGCTCTATCATAACACAACCCCAGAATCAAGCGGCG
GGGTACCACGGGCGTTGACAACGCGCAAGGTTTTCCACGGCAAGCGACGC
CAGTCATCTTTATTAATTATTATCGCTTTAGCACGTTTGTTTTGTAGCGA
TTTTATTTAGACGTTACCTTTTTTTGCAGAATACAACACTATCGATTTAG
AGATCACCGTTCATGCATACGGGAGTGATGCCAAAAGTCACAAGTGATTT
CAGAGGGGGGGCTTGTGAAGCAAGTGTTGAACATAGTAGGATTTTTCACC
TCACGGGCGTAAGCTAAACTACCTTCTAGTCTCAACAAAAGCTGCCCCCC
TCCTCGCTTCGGTGAGGCTTGGTTAGTGGCCTACATGTCGAAGGAGGGCG
TGTTGCCCCCCTCCCTCCCCGCGCGCGCGCGTTTACTCATGCTACGCTGC
TCTCCTTTCGTTCCAAATCTATTGTAACGCCACAGGTTAGATACAGCCGA
AGGGATATATTTTGGCGTTACGCCAAGGGGTGGCTCATCGTTGACCTCCT
GGCTGCCTTCCCCTTCACCTTTATACCGGGCCTCGGGCCGGACGATACCG
AGGGCTACCACGAAATCGCCTACTTCTTGAGCCTGCCCAAGATACTCCGG
CTGTATGGGTTGCTCACCATGGCGCAAGAGAACCACAGGCTGCACGAGGG
CGGCTTCCTGGCGATCCGCACCTTGCTTTCGGTCATCATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10212:4398..5587+

>mRNA_S-dermatodea_contig10212.156.1 ID=mRNA_S-dermatodea_contig10212.156.1|Name=mRNA_S-dermatodea_contig10212.156.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig10212:4398..5587+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATACTTCGCCTTAACACCGGCTTTGTCAACAACGACACCGGCATCAT
GATACTTCGCCTTAACACCGGCTTTGTCAACAACGACACCGGCATCGTTA
GATACAGCCGAAGGGATATATTTTGGCGTTACGCCAAGGGGTGGCTCATC
GTTGACCTCCTGGCTGCCTTCCCCTTCACCTTTATACCGGGCCTCGGGCC
GGACGATACCGAGGGCTACCACGAAATCGCCTACTTCTTGAGCCTGCCCA
AGATACTCCGGCTGTATGGGTTGCTCACCATGGCGCAAGAGAACCACAGG
CTGCACGAGGGCGGCTTCCTGGCGATCCGCACCTTGCTTTCGGTCATCAT
GGTTAGATACAGCCGAAGGGATATATTTTGGCGTTACGCCAAGGGGTGGC
TCATCGTTGACCTCCTGGCTGCCTTCCCCTTCACCTTTATACCGGGCCTC
GGGCCGGACGATACCGAGGGCTACCACGAAATCGCCTACTTCTTGAGCCT
GCCCAAGATACTCCGGCTGTATGGGTTGCTCACCATGGCGCAAGAGAACC
ACAGGCTGCACGAGGGCGGCTTCCTGGCGATCCGCACCTTGCTTTCGGTC
ATCATG
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