mRNA_S-dermatodea_contig10212.154.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10212.154.1
Unique NamemRNA_S-dermatodea_contig10212.154.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10212.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10212contigS-dermatodea_contig10212:1064..1969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10212.154.1prot_S-dermatodea_contig10212.154.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10212 1086..1969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.4644082-UTR-S-dermatodea_contig10212:1063..10851622924145.4644082-UTR-S-dermatodea_contig10212:1063..1085Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10212 1064..1085 +
1694079048.7115695-UTR-S-dermatodea_contig10212:1063..10851694079048.7115695-UTR-S-dermatodea_contig10212:1063..1085Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10212 1064..1085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.4730387-CDS-S-dermatodea_contig10212:1085..12531622924145.4730387-CDS-S-dermatodea_contig10212:1085..1253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 1086..1253 +
1694079048.7218165-CDS-S-dermatodea_contig10212:1085..12531694079048.7218165-CDS-S-dermatodea_contig10212:1085..1253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 1086..1253 +
1622924145.4838407-CDS-S-dermatodea_contig10212:1870..19691622924145.4838407-CDS-S-dermatodea_contig10212:1870..1969Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 1871..1969 +
1694079048.7297733-CDS-S-dermatodea_contig10212:1870..19691694079048.7297733-CDS-S-dermatodea_contig10212:1870..1969Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 1871..1969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10212.154.1

>prot_S-dermatodea_contig10212.154.1 ID=prot_S-dermatodea_contig10212.154.1|Name=mRNA_S-dermatodea_contig10212.154.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MDNFVPFSGAEEKMVCPEEDDDPRMVRMSSSASMRKGDDGDMRMTRTPSV
ARMFARIQNLPGTPEGAEKDTDFDFATSSLRPRSTAASE
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mRNA from alignment at S-dermatodea_contig10212:1064..1969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10212.154.1 ID=mRNA_S-dermatodea_contig10212.154.1|Name=mRNA_S-dermatodea_contig10212.154.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=906bp|location=Sequence derived from alignment at S-dermatodea_contig10212:1064..1969+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TAGAAGGAGCCAATTGTCAGAAATGGACAACTTCGTGCCTTTCAGCGGGG
CAGAGGAAAAAATGGTTTGTCCGGAGGAGGACGACGACCCTAGGATGGTC
AGAATGTCATCCTCGGCTTCGATGAGGAAGGGAGACGACGGAGATATGAG
GATGACCCGAACACCGTCCGTGGCGAGGATGTTCGCAAGGGTGGGTGGGC
CTGAAAGATTGCGTTGCTGCTGCACTCGTTCGTTTGTTTCTCGCATATTT
GGTTGCGTTTATTTTATTTTATTGTTTCTTGTCATGCGTTTTTTTTTCAA
GAGCAAACGTAACGCGAAAAAAGTCCACACCACTCCTTGGTGGTTTGTGG
AAGTGTCTCTGGTGGGCGAGGGTGTTTTGCATGGTTTCGAGTTGTAGTTC
GGGTAGGATCTTGCCGCCAAAATCCCCGCCGCCACGTCCTGTGCGTTTTT
CTTTGTACGTGCCAAGCGAGTCTAACCAGCCCTTACGTCTCTTCTTCTTG
GTTGCCGTCGTAGCGTTTCCCCCCCCTCGGTTTGTGGCGGGAAACCACCT
GCCGTGAGGGAACGCCTGCTGTGGGTCAAATTGTCACCGCGTCAACGAAA
CCACATGCCATAACGACCTACAACCCTCGTGGAGGTAGTCGTGAACTTCC
ACTTCTACTCCTTGCTGCTGAACCTCCCCCGTCGTTTGGAAGACCAGTTG
CCAACAACGACGACGCAGGGTGTAGCCACTACTGAAGAATTGCCCCCCAC
CAACCGCCGCTGCCGCCGCCCTGTGAACGCCTCGGTTCATGCTTTTGACA
CTTTCAGATTCAGAACCTTCCTGGCACACCCGAGGGTGCGGAGAAGGATA
CGGATTTCGATTTCGCAACATCGTCGCTGCGCCCCCGTAGCACCGCGGCG
TCGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10212:1064..1969+

>mRNA_S-dermatodea_contig10212.154.1 ID=mRNA_S-dermatodea_contig10212.154.1|Name=mRNA_S-dermatodea_contig10212.154.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig10212:1064..1969+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACAACTTCGTGCCTTTCAGCGGGGCAGAGGAAAAAATGGTTTGTCC
GGAGGAGGACGACGACCCTAGGATGGTCAGAATGTCATCCTCGGCTTCGA
TGAGGAAGGGAGACGACGGAGATATGAGGATGACCCGAACACCGTCCGTG
GCGAGGATGTTCGCAAGGATGGACAACTTCGTGCCTTTCAGCGGGGCAGA
GGAAAAAATGGTTTGTCCGGAGGAGGACGACGACCCTAGGATGGTCAGAA
TGTCATCCTCGGCTTCGATGAGGAAGGGAGACGACGGAGATATGAGGATG
ACCCGAACACCGTCCGTGGCGAGGATGTTCGCAAGGATTCAGAACCTTCC
TGGCACACCCGAGGGTGCGGAGAAGGATACGGATTTCGATTTCGCAACAT
CGTCGCTGCGCCCCCGTAGCACCGCGGCGTCGGAGATTCAGAACCTTCCT
GGCACACCCGAGGGTGCGGAGAAGGATACGGATTTCGATTTCGCAACATC
GTCGCTGCGCCCCCGTAGCACCGCGGCGTCGGAG
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