mRNA_S-dermatodea_contig1021.153.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1021.153.1
Unique NamemRNA_S-dermatodea_contig1021.153.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: D8LHY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY8_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.190e-39
Identity = 90/191 (47.12%), Postives = 107/191 (56.02%), Query Frame = 3
Query:   18 QVRSAEKRGHAVYRSLSDIHNFLYEAVCPPPRTPLEARQSPDPRQVPPAATRDAGELGNIR------GCDNGQRRCLALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRL---GCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIK-----------DPGESNYFLVEVLRLL 530
            Q+RS E +GH VYRS++D H+ + E V   P  P  +  +P P              G         G  N   RCLAL+D+YPFWR  LE AEAGK+LPVDLSD  KV  VMFDDNIG     G  +GAHIVDVRD  TG PV FD A +R IVRAEP+LAI            D    N FLV++L+ L
Sbjct:  390 QLRSIESKGHPVYRSVADAHDAICERVVSAPLPPAGS-VAPKPAAXXXXXXXXXXSCGESTNGIAGSGERNNHGRCLALRDFYPFWRKNLESAEAGKVLPVDLSDSPKVWPVMFDDNIGHWRPDGSGSGAHIVDVRDMVTGRPVPFDTALERHIVRAEPFLAIDQDDVAVRAAAADASNHNVFLVQILKRL 579          
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: A0A6H5L7S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.560e-37
Identity = 92/193 (47.67%), Postives = 110/193 (56.99%), Query Frame = 3
Query:   18 QVRSAEKRGHAVYRSLSDIHNFLYEAVCPPPRTPLEARQSPDPRQVPPAATRDAGELGNIRGCDNG---------QRRCLALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRL---GCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIK----------DPGESNYFLVEVLRLL 530
            Q+RS E +GH VYRS+ D H+ + E V     + L    S  P+  P A T  AG   +     NG           RCLAL+D+YPFWR  LE AEAGK+LPVDLSD  KV  VMFDDNIG     G  + AHIVDVRD  TG PV FD+A +R IVRAEP+LAI           D    N+FLV +L+ L
Sbjct:  360 QLRSIESKGHPVYRSVVDTHDAICERVL----SALPPAGSVAPK--PAATTTTAGPPPSCGESTNGIAGSGETTNHGRCLALRDFYPFWRKNLESAEAGKVLPVDLSDTPKVWPVMFDDNIGHWRPDGSGSDAHIVDVRDMVTGRPVPFDMALERHIVRAEPFLAIDREDVAVGAADDAFGHNFFLVHILKRL 546          
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: A0A067CH86_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CH86_SAPPC)

HSP 1 Score: 84.0 bits (206), Expect = 4.050e-15
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  219 RRCLALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRLGCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIKDPGESNYFLVEVLRLL 530
            RR  A++DY+ +W +  E AE GK+L V   D      V FDD+I     A  AHIVDVRD ATG  V+FDVA   ++ R EPY AI DP    Y++  V++LL
Sbjct:  280 RRVTAMRDYWEWWSAHAEHAEYGKLLLVTPGDGPAT--VFFDDHIE----ATEAHIVDVRDAATGQVVDFDVAKDTYLKRVEPYYAITDP---QYYIRHVVQLL 374          
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: A0A2D4BQN6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQN6_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 3.040e-14
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  228 LALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRLGCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIKDPGESNYFLVEVLRLL 530
            +AL+DY+ +W +  E  + GK+L VD   D+    + FDD+I     A  AHIVDVRD ATG PV FD +  R++ R EP+ AI D   S YF+  V  LL
Sbjct:  416 IALRDYWEWWSAHAENGDYGKLLLVDTRGDNDEISIFFDDHIE----AHHAHIVDVRDVATGAPVPFDESKGRYLQRVEPFAAITD---SQYFINFVSHLL 509          
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: A0A1V9YGT7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGT7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.030e-13
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  219 RRCLALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRLGCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIKDPGESNYFLVEV 518
            RR  A++DY+ +W +  E AE GK+L V   +      V FDD+I     AA AHIVDVRD ATG  V F VA   ++ R EPY AI DP    Y++ +V
Sbjct:  283 RRVTAIRDYWEWWSAHAEHAEYGKLLLVTPGEGPAT--VFFDDHIE----AAEAHIVDVRDAATGDVVPFAVAKDTYLKRVEPYYAITDP---QYYIAQV 373          
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: A0A485KCA4_9STRA (Aste57867_2227 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCA4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.050e-12
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  111 RTPLEARQSPDPRQVPPAATRDAGELGNIRGCDNGQ---------RRCLALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRLGCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIKDPGESNYFLVEVLRLL 530
            + P  A  + D  +   AAT  A ++  +RG  + Q         R  +AL+DY+ +W +  E AE GK+L +D S  S    V FDD++        AHIVDVRD ATG  V FD A  +++ R EPY AI D   ++Y++  +  +L
Sbjct:  260 KVPFHASNTTDTPREFYAAT--APDVTVVRGFSSVQETIHSMLATRSVIALRDYWEWWSTHAEHAEYGKLLLIDPSLPS----VFFDDHVEE----HEAHIVDVRDAATGAVVPFDEAKAKYLRRVEPYYAITD---ADYYIHHIQSIL 395          
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Match: A0A6G0WYV9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYV9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.750e-9
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  219 RRCLALQDYYPFWRSRLEEAEAGKILPVDLSDDSKVRLVMFDDNIGRLGCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIKDPGESNYFLVEVLRLL 530
            R  +AL+DY+ +W +  E AE GK+L VD +    +  V FDD+I        AHIVDVR+ ATG  V F+ A  +++ R EP+ AI D   ++Y++  V  ++
Sbjct:  289 RPVIALRDYWEWWSTHAEHAEYGKLLLVDPA----LPAVFFDDHIEE----HEAHIVDVRNAATGTVVPFEEAKAKYLRRVEPFYAITD---ASYYIRHVQAIV 381          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1021.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHY8_ECTSI3.190e-3947.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7S9_9PHAE1.560e-3747.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A067CH86_SAPPC4.050e-1546.15Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BQN6_PYTIN3.040e-1444.55Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9YGT7_9STRA6.030e-1345.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KCA4_9STRA3.050e-1235.57Aste57867_2227 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WYV9_9STRA1.750e-938.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1021contigS-dermatodea_contig1021:19512..20911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D8LHY8
EggNOG OGs2CXG7@1,2RX7W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size741
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1021.153.1prot_S-dermatodea_contig1021.153.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1021 20506..20751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.3889744-UTR-S-dermatodea_contig1021:19511..195361622924145.3889744-UTR-S-dermatodea_contig1021:19511..19536Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 19512..19536 +
1694079048.6588497-UTR-S-dermatodea_contig1021:19511..195361694079048.6588497-UTR-S-dermatodea_contig1021:19511..19536Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 19512..19536 +
1622924145.3977942-UTR-S-dermatodea_contig1021:19916..202141622924145.3977942-UTR-S-dermatodea_contig1021:19916..20214Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 19917..20214 +
1694079048.6702652-UTR-S-dermatodea_contig1021:19916..202141694079048.6702652-UTR-S-dermatodea_contig1021:19916..20214Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 19917..20214 +
1622924145.4059079-UTR-S-dermatodea_contig1021:20493..205051622924145.4059079-UTR-S-dermatodea_contig1021:20493..20505Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 20494..20505 +
1694079048.6799707-UTR-S-dermatodea_contig1021:20493..205051694079048.6799707-UTR-S-dermatodea_contig1021:20493..20505Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 20494..20505 +
1622924145.4334328-UTR-S-dermatodea_contig1021:20751..209111622924145.4334328-UTR-S-dermatodea_contig1021:20751..20911Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 20752..20911 +
1694079048.6999705-UTR-S-dermatodea_contig1021:20751..209111694079048.6999705-UTR-S-dermatodea_contig1021:20751..20911Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1021 20752..20911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.4189463-CDS-S-dermatodea_contig1021:20505..207511622924145.4189463-CDS-S-dermatodea_contig1021:20505..20751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 20506..20751 +
1694079048.6894143-CDS-S-dermatodea_contig1021:20505..207511694079048.6894143-CDS-S-dermatodea_contig1021:20505..20751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 20506..20751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1021.153.1

>prot_S-dermatodea_contig1021.153.1 ID=prot_S-dermatodea_contig1021.153.1|Name=mRNA_S-dermatodea_contig1021.153.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
MFDDNIGRLGCAAGAHIVDVRDTATGGPVEFDVASKRFIVRAEPYLAIKD
PGESNYFLVEVLRLLLFRIDGNGFIPSAPES*
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mRNA from alignment at S-dermatodea_contig1021:19512..20911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1021.153.1 ID=mRNA_S-dermatodea_contig1021.153.1|Name=mRNA_S-dermatodea_contig1021.153.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1400bp|location=Sequence derived from alignment at S-dermatodea_contig1021:19512..20911+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACTTCACAGCATCGAGCAAGTCAGGTGCCGTTAAATAACGCTCCTGTCG CCGGGGGGGGGGGGGGGGCAGTGCGTAACGTGCCTTGTAGCATCTCCAGG TCGTGGCTAGGGCGGAAATTTCTCCGGAAAAGTTTTTAGTCCATACTTTG TCCTCGCGCGATCCGGAGGCTGCCGAATCGCTGACCATCTACGAATATTA TGGCGCCTACCTGCAGGTCGAAAGCGCACGCCGGCATGCGGCACTCTGCT TGCCCGAATGGCAAGTCTGTGAGGGGGTACTGTTGACATTCTCCGTTTTA CCCCCTCTCGAAGTCTGGACGAAATACACGTTCGTTGCCAGCCACAAAAA CACCGACAGCTCGAGCGAATCTTGCATTTCTGACGCTCGTGGTTTGATTC TCCAGGTCTGCAGAGAAACGTGGGCATGCTGTCTACCGCTCCCTCTCCGA CATCCACAACTTCCTATACGAGGCGGTATGCCCCCCACCGCGCACGCCCT TAGAGGCACGACAATCACCGGATCCGAGACAAGTCCCTCCGGCTGCAACC AGAGATGCGGGCGAGCTCGGCAACATCAGGGGCTGCGATAACGGGCAACG GCGGTGTCTCGCACTGCAGGACTACTACCCGTTCTGGCGATCGAGGTTGG AGGAGGCAGAGGCGGGAAAGATCTTGCCGGTTGACCTGTCGGACGATTCA AAGGTGACGTCATGACCATGGATGACATCACTCGTCAACCAAGAAGTTTC GCACATCCGAAATTGTCCTTAAAAACGATTGGAAAGAAGGAAAGCTGCGG GGTCCCTTTCCCTCTCTCTGTGGTCTGAATTTGCGGCGCGCTGGATGATG CATTTGAGTGGCGGGAGTGTGTAAAATTTGTTTGAACTCTGGACGACGCG TGGCGGCATAATAGTAAGCAACGTCTCGCCCTTGCGCCCCCCGGCCCCCC CCGCACCTGACCATATTCCCGTATGTTGTGAGGTGCGGTTGGTGATGTTC GACGACAATATCGGGAGGCTGGGCTGCGCGGCCGGCGCGCATATCGTGGA CGTGCGGGATACCGCGACAGGAGGACCGGTTGAATTTGACGTGGCTTCGA AGCGTTTCATCGTACGGGCAGAGCCCTACCTGGCCATCAAAGATCCCGGC GAGTCCAACTATTTCCTGGTTGAGGTGTTGCGGCTGCTGCTGTTCAGGAT AGACGGCAACGGCTTCATCCCGTCTGCTCCAGAGTCATGATGGCGCCGCG AATTCAATTATTTCGTGGTGGTGGTGTTGCGGCGCCTACTGCACGAGCCA GACAGAAGGAGGTCGATTATGTCTGCTCCAGAGCCACCATGGCACCTTGT GTTGCTCAATTACAAACACATCCTCGTTTCGAGGCCCTTGGGCCGCGCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1021:19512..20911+

>mRNA_S-dermatodea_contig1021.153.1 ID=mRNA_S-dermatodea_contig1021.153.1|Name=mRNA_S-dermatodea_contig1021.153.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig1021:19512..20911+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGACGACAATATCGGGAGGCTGGGCTGCGCGGCCGGCGCGCATAT
CGTGGACGTGCGGGATACCGCGACAGGAGGACCGGTTGAATTTGACGTGG
CTTCGAAGCGTTTCATCGTACGGGCAGAGCCCTACCTGGCCATCAAAGAT
CCCGGCGAGTCCAACTATTTCCTGGTTGAGGTGTTGCGGCTGCTGCTGTT
CAGGATAGACGGCAACGGCTTCATCCCGTCTGCTCCAGAGTCATGAATGT
TCGACGACAATATCGGGAGGCTGGGCTGCGCGGCCGGCGCGCATATCGTG
GACGTGCGGGATACCGCGACAGGAGGACCGGTTGAATTTGACGTGGCTTC
GAAGCGTTTCATCGTACGGGCAGAGCCCTACCTGGCCATCAAAGATCCCG
GCGAGTCCAACTATTTCCTGGTTGAGGTGTTGCGGCTGCTGCTGTTCAGG
ATAGACGGCAACGGCTTCATCCCGTCTGCTCCAGAGTCATGA
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