mRNA_S-dermatodea_contig1021.152.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1021.152.1
Unique NamemRNA_S-dermatodea_contig1021.152.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A6H5L7S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 8.460e-34
Identity = 70/122 (57.38%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:    1 ARLLRRERVPLVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDG--EGSTWRWNGCPPSPDAPSLGTPMDGVSGKDSQ---------LVTYSDFLHDVFADGEGRDNRRMKDAR 333
            A++LR     L+LHFD+NKTLIMVDPAG KTQ QVLN VL+EICWG+VE  G  E S W WNG PPS + P   T + G  G   Q         LV+YSDFLH  F D EG+DNRRMKD R
Sbjct:   84 AQVLRTNGTRLILHFDLNKTLIMVDPAGRKTQAQVLNSVLAEICWGHVEHSGAEETSVWTWNGAPPSTEPPLRRT-LSGSRGLQQQNHHVTAPVALVSYSDFLHQEFGDAEGKDNRRMKDIR 204
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: D8LHY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.680e-30
Identity = 70/130 (53.85%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:    1 ARLLRRERVPLVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDG--EGSTWRWNG--------CPPSPDAPSLGTPMDGVSGKDSQ---------LVTYSDFLHDVFADGEGRDNRRMKDAR 333
            A++LR     L+LHFD+NKTLIMVDPAG KTQ QVLN VL++ICWG+VE  G  E S W WNG         PPS + PSL     G  G   Q         LV+YSDFLH  F D EG+DNRRMKD R
Sbjct:  106 AQVLRTTGTRLILHFDLNKTLIMVDPAGRKTQSQVLNSVLADICWGHVEHSGAKETSVWTWNGSFSSPIRKAPPSTE-PSLRRTPSGPRGLQPQNHQETAPVALVSYSDFLHQEFGDAEGKDNRRMKDIR 234
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: L8GRH1_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRH1_ACACA)

HSP 1 Score: 68.2 bits (165), Expect = 3.920e-11
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   10 LRRERVPLVLHFDVNKTLIMVDPAGGK-TQPQVLNGVLSEICWGYVEQDGEGSTWRWNGCPPSPD-APSLGTPMDGVSGKDSQLVTYSDFLHDVFA-DGEGRDNRRMK 324
            +  +R  LVLHFDVNKTL+M+DPAGGK +  ++++ +LSEI +G +  DGE   WR     P PD   +  TP      ++S L+ Y DFL   FA D   RD  R +
Sbjct:    1 MEEKRPHLVLHFDVNKTLVMMDPAGGKGSVEEMISDLLSEIAYGTISDDGE---WR-----PEPDHLGTTNTPPPDHPHRES-LINYYDFLVRKFAADKPHRDRLRAR 99
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A7S0ZQD8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZQD8_NOCSC)

HSP 1 Score: 67.4 bits (163), Expect = 8.640e-11
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:   28 PLVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDGEGSTWRWNGCPPSPDAPSLGTPMD-------GVSGKDSQLVTYSDFL 276
            P+VLHFD+NKT+IM D   G T   ++N +LSE+CWG         TW ++GC P+ D   L             V GK   +VTYSD L
Sbjct:  180 PIVLHFDINKTIIMSDSVKGATTDHMVNALLSEVCWG---------TWEFSGCDPADDEEKLRLASTWSLESGPSVVGKPG-MVTYSDLL 259
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A835YQ40_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ40_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.950e-10
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   31 LVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDGEGSTWRWNG---CPPSPDAPSLGTPMDGVSGKDSQLVTYSDFLHDVFAD 294
            L +  D+NKT++M DPAGG+T+  V N VLSE+  G ++   +   W W G   CP    A             D  LV+Y+DF+H  +AD
Sbjct:    6 LTIILDINKTIVMADPAGGQTEDDVCNSVLSEVACGRIDDTSDPPRWHWAGGAVCPRHELA-------------DPTLVSYADFVHARYAD 83
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A813JSL0_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JSL0_POLGL)

HSP 1 Score: 63.9 bits (154), Expect = 1.380e-9
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   31 LVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDGEGSTWRWNGCPPSPDAPSLGTPMDGVSGKDSQLVTYSDFLHDVFADGEGR 306
            L+LH DVNKT+I  D    K+  + +   +SE+ WG V QDG+   W W+  PPS   P   +  + +     +LVTY++F   V  D E R
Sbjct:   22 LLLHLDVNKTVIQSDSIQMKSIEEGIREGVSELFWGTVRQDGDKLVWEWSKTPPSCSPPGHNSSNEPMG----KLVTYANFCRQVVEDKEER 109
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A6B2L6Y9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L6Y9_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 4.570e-9
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:   31 LVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDGEGST-----------WRWNGCPPSPDAPSLGTPMDGVSGKDSQLVTYSDFLHDVF 288
            ++LHFD+NKT+I+ DPAGGK+  + +NG++ E+ WG  +     S            W W   P +P   S+  P DG +       T+++FLH+  
Sbjct:    1 MILHFDINKTIIISDPAGGKSVSECINGIIGEVVWGTKKALSAASADELKVSLVIDQWVW--VPHNPRVVSVTDPSDGST-------TFANFLHETL 88
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: M4B9G3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9G3_HYAAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.740e-9
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   16 RERVPLVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDGEGSTWRWNGCPPSPDAPSLGTPMDGVSGKDSQLVTYSDFLHDVF 288
            R+RV  VLHFD+N+T++M D AGG+T    +N +LSE  WGY  +    S W      PS D   L T     +     L+TY  F+  ++
Sbjct:    6 RQRV--VLHFDINRTILMSDAAGGRTMENTVNYLLSECTWGYANRSTSPSNWICVSTVPSHDP--LVTANSADTTPQRPLITYKQFVDKMY 92
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A7S0DKZ4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DKZ4_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 2.330e-8
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   31 LVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVE--QDGEG-STWRWNGCPPSPDAPSLGTPMDGVSGKDSQLVTYSDFL 276
            LVLHFDVNKT+IM+D A GK+   +LN V++   WG++   ++GEG + W+          PS+ +P +G       L+TYS F+
Sbjct:   30 LVLHFDVNKTIIMIDKAAGKSTSDLLNIVIANAAWGHIHKGEEGEGKAVWKLFS-----KNPSILSPGEG-------LITYSSFV 102
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BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Match: A0A7S1LSJ1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LSJ1_ALECA)

HSP 1 Score: 58.9 bits (141), Expect = 7.010e-8
Identity = 32/96 (33.33%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   19 ERVPLVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQDGEGSTWRWNGCPPSPDAPSLGTPMDGVSGKDSQLVTYSDFLHDVFADGEGR 306
            + VPL+LHFDVNKT+I+ D    K     +   +SE+ WG +      +TW W G  PS + P+L +     +G  S+   Y  ++  V  D   R
Sbjct:   44 DEVPLILHFDVNKTVILSDSISMKGVEDSIREGISELYWGELRTADSKTTWEWVGTGPSIEPPAL-SGKSAAAG--SKCCNYRQYVKTVIKDSADR 136
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1021.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7S9_9PHAE8.460e-3457.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHY8_ECTSI1.680e-3053.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L8GRH1_ACACA3.920e-1142.59Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S0ZQD8_NOCSC8.640e-1141.11Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A835YQ40_9STRA2.950e-1037.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A813JSL0_POLGL1.380e-936.96Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A6B2L6Y9_9EUKA4.570e-932.99Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
M4B9G3_HYAAE4.740e-937.36Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S0DKZ4_9EUKA2.330e-840.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1LSJ1_ALECA7.010e-833.33Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1021contigS-dermatodea_contig1021:14564..16728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog2880.D8LHY8
EggNOG OGs2CXG7@1,2RX7W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size334
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1021.152.1prot_S-dermatodea_contig1021.152.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1021 14564..16727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.3335352-CDS-S-dermatodea_contig1021:14563..146651622924145.3335352-CDS-S-dermatodea_contig1021:14563..14665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 14564..14665 +
1694079048.6293423-CDS-S-dermatodea_contig1021:14563..146651694079048.6293423-CDS-S-dermatodea_contig1021:14563..14665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 14564..14665 +
1622924145.3476627-CDS-S-dermatodea_contig1021:15380..154611622924145.3476627-CDS-S-dermatodea_contig1021:15380..15461Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 15381..15461 +
1694079048.6398318-CDS-S-dermatodea_contig1021:15380..154611694079048.6398318-CDS-S-dermatodea_contig1021:15380..15461Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 15381..15461 +
1622924145.3596554-CDS-S-dermatodea_contig1021:16577..167271622924145.3596554-CDS-S-dermatodea_contig1021:16577..16727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 16578..16727 +
1694079048.648902-CDS-S-dermatodea_contig1021:16577..167271694079048.648902-CDS-S-dermatodea_contig1021:16577..16727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1021 16578..16727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1021.152.1

>prot_S-dermatodea_contig1021.152.1 ID=prot_S-dermatodea_contig1021.152.1|Name=mRNA_S-dermatodea_contig1021.152.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
ARLLRRERVPLVLHFDVNKTLIMVDPAGGKTQPQVLNGVLSEICWGYVEQ
DGEGSTWRWNGCPPSPDAPSLGTPMDGVSGKDSQLVTYSDFLHDVFADGE
GRDNRRMKDAR
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mRNA from alignment at S-dermatodea_contig1021:14564..16728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1021.152.1 ID=mRNA_S-dermatodea_contig1021.152.1|Name=mRNA_S-dermatodea_contig1021.152.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2165bp|location=Sequence derived from alignment at S-dermatodea_contig1021:14564..16728+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCGGTTGCTGCGCAGGGAAAGGGTGCCGCTGGTGCTGCATTTTGACGT
TAACAAGACGCTGATAATGGTGGACCCTGCCGGCGGGAAGACGCAGCCTC
AGGTGAGAGGCAGTAGATCAGGGCTGCGACCATTGGTGGACATGACGCCC
AAGGAGACCACCCGGCGCCGCGTAAGGCACTGGTGGACAGTGTTGGGCAC
TTCCAGTCTGAGGCTCCAAGCTTCGTGTAGTGCTGTACATACTACAGCCG
GGGTAACCTCGTCGCCGGGGGCTCTACCTTATGTTGCAGGTGTGATATAT
GCCTCTCTGACGAGTTTGAAAACCTCGCTGGCCTTGCGCTTCGATGCCAT
GGCGGGTCGCGCTTCATGGTTTGACACTACAATACATACCTCTTCATGCC
GAGACCCACGGGTACGTTAGTGGTTACTGTTCGTGTGAGCAGTGCTATAC
CATGGTTGCGTTCTGTTGGGTACATACCTTGTGTGCTTGATGAAGGATCA
TGATATGTAGATTTGGGTGAAGGTAAAGCATTTGACGGTTACATACCGAT
CTGATACTTCGGGCTACTGGGTTGTGTTCTGGATGATTTATTCGGGATAC
GGTTATATGTGAGCCGTGTCCTACCGATATACCATGGTAACATGTACGGA
ATCAACCAACCCTCTAGAGTTTCGTCGCCGGTGGTTCCGTAGCATGGCTG
ACGAGACAGGGGATGCCCCAACGCGTGTCGAGCTTGACGCATTAGGTAAG
ATACATCCGTACTTTTCGACACGGATGCCGCCGTCGCCCTCTTGCATGTT
TGGCCGTCCGTGCTCAGGTGCTGAACGGCGTTCTTTCGGAGATTTGCTGG
GGATACGTGGAACAGGATGGGGAAGGTTCGACATGGAGGTGGAATGGGGT
GAGCCTACTATCTATGGCGCTTACCCAAAGACTATGATTGATTTGCCTAA
GAGGACACCAAAGCGCGCGGGTTTGGTGCTGTAAACACCTTCCGTGTTTG
GTACAGCAGTATCGTGCTGATTCATACAAGGGTCGAAATGCGCGCAAAAT
ATCAAGCAGGCTACGGACGCGCAGAGTGTTCGCAGCCGCAGGACGATGTA
GCTTGTTTCTTTCTATGCTTCGCGTTCTTGCTGCCGCTTCTAGTCCGCGC
GTACGATCGCATCGCATGCGGAGGGAGCACTTATAGATTGGGCGATTTTG
TAGCCCTCAGTCTACATTGATTGAGCGATAGATGGGTTTTCACACGTACA
CTTGTAGCCGATCGGCCAAAGTCGACCCGGCTTGTGGTTAGGTGTGCAAG
AACCAAGGGGATTGCTAAACATCTGGTACATCACAAGTCTACTCTGCATA
GCTCTACATTTAGTGCAATATAGAAGAGGGAGAAGCACACCAGAACAGAA
ATCGGAATCGAAGCATGCCTCTCTTGGGGACAGAACTAGGGCACAAACCT
TGTGTCTGTAGACCCGTCGGGCTAAGCTCTTGAAGAGTCAAGTGTATTGC
TCAATCTGCAGAGGGAAATAGCGACGATGGGTAGCGAGCCATTCATTGCT
AAAATAGGCTTTACGGCTCTGTTAGGCGTGGACTTCGAACGACATTGGTT
GTGGCTGATCGTTCGCATGTACAGTATGACAGTCGATCAACTGTTCAATC
GGTGTAGATGGTGTCAACAGGTGCCTATCATACGTGATGTCTACACGAGC
CCAAAAAGTCGGTGTTCCTTATGCCGCTGAGGCCCTACAGTAACCGATAC
ACTCGAATGCTGTTCGCAGCACCATCGGTGTTAATGTGGGTTCAGTCGTG
TACCCTGGTTACTCCGCCAAACGACTAGCCTCGGTACAGTCATGGCCATG
ACGGATTTTTCTCTCCTTCCTACCGAGGCAATCGATGTCACCATGATAGC
CCCTTGCTCGAAAAGCGCCCGAATCTTGTTCGCATCGCGTACCATACGCC
GTGTTTTGCCTACAGACTCCACCCAGCACTCGCTGACCCTGCCACGTCTT
TCCCTCCTCCCCAGTGCCCCCCGTCGCCCGACGCTCCCTCCCTGGGAACG
CCCATGGATGGAGTGAGTGGGAAAGACTCACAGCTCGTGACTTACTCGGA
CTTTCTGCACGATGTTTTCGCGGATGGTGAGGGCAGGGACAACAGGCGCA
TGAAAGACGCAAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1021:14564..16728+

>mRNA_S-dermatodea_contig1021.152.1 ID=mRNA_S-dermatodea_contig1021.152.1|Name=mRNA_S-dermatodea_contig1021.152.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig1021:14564..16728+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCGGTTGCTGCGCAGGGAAAGGGTGCCGCTGGTGCTGCATTTTGACGT
TAACAAGACGCTGATAATGGTGGACCCTGCCGGCGGGAAGACGCAGCCTC
AGGCGCGGTTGCTGCGCAGGGAAAGGGTGCCGCTGGTGCTGCATTTTGAC
GTTAACAAGACGCTGATAATGGTGGACCCTGCCGGCGGGAAGACGCAGCC
TCAGGTGCTGAACGGCGTTCTTTCGGAGATTTGCTGGGGATACGTGGAAC
AGGATGGGGAAGGTTCGACATGGAGGTGGAATGGGGTGCTGAACGGCGTT
CTTTCGGAGATTTGCTGGGGATACGTGGAACAGGATGGGGAAGGTTCGAC
ATGGAGGTGGAATGGGTGCCCCCCGTCGCCCGACGCTCCCTCCCTGGGAA
CGCCCATGGATGGAGTGAGTGGGAAAGACTCACAGCTCGTGACTTACTCG
GACTTTCTGCACGATGTTTTCGCGGATGGTGAGGGCAGGGACAACAGGCG
CATGAAAGACGCAAGATGCCCCCCGTCGCCCGACGCTCCCTCCCTGGGAA
CGCCCATGGATGGAGTGAGTGGGAAAGACTCACAGCTCGTGACTTACTCG
GACTTTCTGCACGATGTTTTCGCGGATGGTGAGGGCAGGGACAACAGGCG
CATGAAAGACGCAAGA
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