mRNA_S-dermatodea_contig1021.151.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1021.151.1 vs. uniprot
Match: A0A6H5L713_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L713_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 2.360e-110 Identity = 357/931 (38.35%), Postives = 475/931 (51.02%), Query Frame = 1
Query: 10 VGEDSDGKKDHIITILEEWAAWEKGLEEEAERDEVARGIKELADRPISSVDANSA--QHAEXXXXXXXXXXDNRCVVTEFEGTSSLGTAVARTEKALGATYSPVDAGRVLFQT-RRDRRQAERNDPVARARRKALKVWAADQTRRRSSGQQLAGLEGLDPPGWTS----KESAARQIKRRSSAAVTVNNNRNGG-----EPW----EAPRVRSRP---SXXXXXXXXLQLEAGAGESSPRRYVSTSRSSERQLPPSADRASTPSGKNGQRRRDPHPWRANMKTPDKQGRGSATGVYNAWEGDVHTAPATPRSPPQT-----------VAGRGSPWARSPSRETAGGILVKHCFFYGSGGRAGSEALAARGR----NFESQWMRQFREEVQANPNWWAGSDQCASA---TKSAAESLNTFLRGTGPRTLPVRYSSTANLPTSEQGWATRSTDLWREVRSLLANDRRGDDRRIGDGVGGA--DREVRAIASDRVDVLSFGDRLRYTPLSQGAWVVDRAGGARSKSVGALLDSDGQDRAAIEAEKQTLQARSLQAAEDAGGAVVDDVGEK------------------------SSPGDVKAREGQQELGGGGGTGDEDSSKAAHRG---NLLSVHDAILTRLRGEIDSATREEIVLRAAEDARGALARDRASSISPRRPSIELPRISPTGTMTDA-LESIDYDKVEATLSLIELASRAAGPDAGKQMLQALEGLDKMHQGSAVDEAAKK-------GRTPVEDTNARDDGLPAE-------------ALG--SEEERVITTEGASATAQEAVGENETADPGVATASGLRS-TE-----------------GDYTTVKTRLENVNEPSTGAPAKITESCQPSRKAALAVSASSDESAGS-GSTGGVIQSIGNWLWGGKNNP---SRTSSVASDV 2469
V D++ ++D II+ILE+WAAWE+ LEE A+ E + +E +S + A S H + D+ E S+ G +++ L AT+ + ++L T RR+RR+AER+DP+ARARR+ALKVWAADQTRRRSS ++ E L G S + + + + RRSS TV+ NR GG W + P S P S ++ G SSP + P+A + K+ R PWRANMK P+K+ R SA + EGDV TAP+TPR P VAGRGS WARSPSRETAGGILVKHCFFYGS +A AA +FESQWMRQFR+EVQ NPNWW GSD+ AAE++ +G R+ + TA G A+R+TDLW EVR LLA RR +R G G D E + R+D+LSFGDRLRYTPLSQGAW+V A + + + ++ R A+ +E+ + + + A A DV E+ S G+V+A G +D SKA +L ++H A L +LRGEID TREE+VLRAAE+ARGALARDRA + SPRR S + R SP D+ LESIDYD VEATLSLIELA+RAAGPDAGKQMLQALE LDK+HQ + ++ + G+ E + GL AE A G + ++ + G + +A G+ D G +R+ TE GD + T E++ + + + + S + RK +LAVS+SS+ES GS S+ G++QSIGNWLW N P SR +S +SD
Sbjct: 66 VDADNEDQRDAIISILEDWAAWERNLEEGADVGETRKADEEAVVTGVSGISAASLVDTHNDAKTSCVSKPIDDPAS----EAHSATGPP---SKQGLRATFEAENTNKLLLYTSRRERRRAERHDPIARARREALKVWAADQTRRRSSAEEGKLSERLKQTGRGSFSDERATVSARSSRRSSTDATVDRNRKGGGGLLKSEWFRRRKPPYRTSAPREISTQRHVRNIAEIPLGTQRSSP-------------IAPAAGPLQDVARKSSPR----FPWRANMKEPEKRPRRSAFDLLQ--EGDVSTAPSTPRVPTTVLSSPSSSSSLVVAGRGSAWARSPSRETAGGILVKHCFFYGSSDKATPRRAAAEAATASTSFESQWMRQFRKEVQRNPNWWLGSDRFVHGRTYASPAAENVPGGAKGASGRSARPLFP-TALTHRGGGGMASRTTDLWNEVRLLLAAGRRSGERHAGGSKRGREDDHEEGDPKAARLDILSFGDRLRYTPLSQGAWLVGEGATATTATTTSSASTEKSVRNAMLSEEVHVAVATRDMVDVA--AARADVEERRDSKAGRPDALNRVPSKPAADESVSPTGNVRAE-----------AGHDDRSKAVRTSGCHDLQTIHAATLAKLRGEIDPFTREELVLRAAEEARGALARDRARNTSPRRASAGVFRPSPKARKRDSTLESIDYDTVEATLSLIELATRAAGPDAGKQMLQALEDLDKIHQRVSEEKGPTENERWILDGKADGETLLGAESGLNAEIGDAGRSDATRPRAPGDPTAKKEDVPVGGERSRTTKASGDLSGRDQGTHAGGSVRAETEVNALNSNDHNRGGNPDAGDVQS-NTDGESLLDGTKESEMLVATSPERGRKFSLAVSSSSEESTGSQASSVGILQSIGNWLW--SNTPPSRSRQNSQSSDA 953
BLAST of mRNA_S-dermatodea_contig1021.151.1 vs. uniprot
Match: D8LHY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY9_ECTSI) HSP 1 Score: 392 bits (1007), Expect = 6.800e-106 Identity = 306/726 (42.15%), Postives = 394/726 (54.27%), Query Frame = 1
Query: 10 VGEDSDGKKDHIITILEEWAAWEKGLEEEAERDEVARGIKELADRPISSVDANS---AQHAEXXXXXXXXXXDNRCVVTEFEGTSSLGTAVARTEKALGATYSPVDAGRVL-FQTRRDRRQAERNDPVARARRKALKVWAADQTRRRSSGQQLAGLEGLDPPGWTS----KESAARQIKRRSSAAVTVNNNRNGGE-PWEAPRVRSRPSXXXXXXXXLQLEAGAGESSPRRYVSTSRSSERQLPPSADRASTP-------SGKNGQRRRDP-HPWRANMKTPDKQGRGSATGVYNAWEGDVHTAPATPRSPPQT-----------VAGRGSPWARSPSRETAGGILVKHCFFYGSGGRAGSEALAARGR----NFESQWMRQFREEVQANPNWWAGSDQ------CASATKSAAESLNTFLRGTGPRTLPVRYSSTANLPTSEQGWATRSTDLWREVRSLLANDRRGDDRRIGDGVGGA--DREVRAIASDRVDVLSFGDRLRYTPLSQGAWVVDRAGGARSKSVGALLDSDGQDRAAIEAEKQ--TLQARSLQAAEDAGGAVVDDVGEKSSPGDVKAREGQQE--------LGGGGGTGDEDSSKAAHRG-----NLLSVHDAILTRLRGEIDSATREEIVLRAAEDARGALARDRASSISPRRPSIELPRISPTGTMTDAL-ESIDYDKVEATLSLIELASRAAGPDAGKQMLQALEGLDKMHQ 2019
V D + ++D II+ILE+WAAWE+ LEE A+ E + ++ +S + A S Q+ D G SS ++ L AT+ + ++L + +RR+RR+AE +DP+ARARR+ALKVWAADQTRRRSS ++ E L G S + + + + RRSS TV+ NR GG P + R R + E S +R+V ++PP R STP S + R+ P +PWRANMK P+K+ R SA + EGDV AP+TPR P VAGRGS WARSPSRETAGGILVKHCFFYGS +A AA +FESQWMRQFREEVQ NPNWW SD+ CAS AA ++ +G R+ + TA G A+++TDLW EVR LLA R+ +DR G G D E + + R+D+LSFGDRLRYTPLSQGAW+V A S + + ++ R A+ +E+ L R + AG V + K+ D +R Q +G D A RG +L S+H A L +LRGEID TREE+VLRAAE+ARGALARDRA + SPRR S + R SP D+ ++IDYD VEATLSLIELA+RAAGPDAGKQMLQALE LDK+HQ
Sbjct: 66 VDADDEDQRDAIISILEDWAAWERNLEEGADVSETKKADEQAVVTGVSGISAASLVDTQNDARTSRVSKPNDDPASAAHSASGPSS--------KRGLRATFEAGNPNQLLLYASRRERRRAEIHDPIARARRQALKVWAADQTRRRSSAEESTLSERLKQQGRGSFSYERATVSVRSSRRSSTDATVDRNRKGGGGPLKNEWFRRRKPPYRA--------SAPREISAQRHVRNIA----EIPPGPQR-STPTVPAAGLSPQEAGRKSSPRYPWRANMKEPEKRPRRSAFDLLR--EGDVSMAPSTPRVPTTVLSSPSSSSSLVVAGRGSAWARSPSRETAGGILVKHCFFYGSSDKATPRRAAAEAATASTSFESQWMRQFREEVQRNPNWWLSSDRFVHGRACASP---AAGNVPGGAKGASGRSARPPFP-TALTHRGGGGMASQTTDLWNEVRLLLAAGRQNEDRHTGGSRRGPGHDHEKGDLKAARLDILSFGDRLRYTPLSQGAWLVGEGATATSAATTSSASAEKSARNAMLSEEVHVALATRDMVDVAAAGTDVEERQDSKAGRSDALSRVPSQSAADEIVSPIGNVRAEAGHDDRSRAVRGTSGCHDLQSIHAATLAKLRGEIDPFTREELVLRAAEEARGALARDRARNTSPRRASAGVFRPSPKARKRDSTPDAIDYDTVEATLSLIELATRAAGPDAGKQMLQALEDLDKIHQ 764 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1021.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1021.151.1 >prot_S-dermatodea_contig1021.151.1 ID=prot_S-dermatodea_contig1021.151.1|Name=mRNA_S-dermatodea_contig1021.151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1340bp MSTKKPLRRTSVDSDMPTTGSRGGRLGYLAGGCHQKLNRKSHNTTAQTFVback to top mRNA from alignment at S-dermatodea_contig1021:156..12760- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1021.151.1 ID=mRNA_S-dermatodea_contig1021.151.1|Name=mRNA_S-dermatodea_contig1021.151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=12605bp|location=Sequence derived from alignment at S-dermatodea_contig1021:156..12760- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1021:156..12760- >mRNA_S-dermatodea_contig1021.151.1 ID=mRNA_S-dermatodea_contig1021.151.1|Name=mRNA_S-dermatodea_contig1021.151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=8040bp|location=Sequence derived from alignment at S-dermatodea_contig1021:156..12760- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |