mRNA_S-dermatodea_contig10207.149.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10207.149.1
Unique NamemRNA_S-dermatodea_contig10207.149.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10207.149.1 vs. uniprot
Match: D7FQ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ55_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-14
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   97 MAIFAVFVKDVPYDVSVQLQRQAFITSKVIDQVPDEMR-APLKTAGRRGIDVEQGDDRPPPPE-LSSPKYSLC 309
            MA+FA+F+  VP DV++QL+RQAFITSK+    PDE R A +++AG+R +D++  DDRPP  E +  P+YS+C
Sbjct:    1 MALFAMFLPHVPNDVTIQLKRQAFITSKI----PDEQRLAHVRSAGQRNLDIKGRDDRPPAKEKIVIPRYSIC 69
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BLAST of mRNA_S-dermatodea_contig10207.149.1 vs. uniprot
Match: F0YKJ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKJ1_AURAN)

HSP 1 Score: 60.1 bits (144), Expect = 4.450e-8
Identity = 41/109 (37.61%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   10 IFFTADRWD-------WSPEDIVWGFVGWQYVIFTMMAIFAVFVKDVPYDVSVQLQRQAFITSKVIDQVPDEMRAPLKTAGRRGIDVEQGDDRPPPPEL---SSPKYSL 306
            IF+T  RW+         P    +GF   QY++FT+M    + V D P DV +QL+RQ F+ SK+IDQ PDEM +     G    D    DD   P  L    +P Y+L
Sbjct: 2112 IFYTV-RWEPFAVEGGLRPNQRSFGFFLVQYIVFTLMVGLMIVVPDQPEDVEIQLKRQRFLVSKLIDQTPDEMDSDSDDGGXXVDD----DDVEAPLRLLAPETPSYAL 2215
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BLAST of mRNA_S-dermatodea_contig10207.149.1 vs. uniprot
Match: A0A7S3H5E0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5E0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.790e-5
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   10 IFFTADRWD-WSPEDIVWGFVGWQYVIFTMMAIFAVFVKDVPYDVSVQLQRQAFITSKVIDQVPDE 204
            I FT D  D ++     W F+G+Q+ +  + AI    V DVP +V +QL RQAF+ SK++D++ D+
Sbjct:  105 ICFTMDVLDQYTSLGRTWLFIGFQWTLIMVQAIVTAAVHDVPPEVEIQLARQAFVRSKLLDKIEDD 170
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BLAST of mRNA_S-dermatodea_contig10207.149.1 vs. uniprot
Match: A0A6U4EFG3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EFG3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.270e-5
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    7 QIFFTADRWD--WSPEDIVWGFVGWQYVIFTMMAIFAVFVKDVPYDVSVQLQRQAFITSKVIDQVPDE 204
              F   D WD  W+ E  +W F+ +QY +F  M +  + V D+  D   Q+QRQ F++ +VI+Q  D+
Sbjct:  646 MCFTFEDIWDIEWTVEGRLWTFIIFQYFVFVCMYVLELAVPDIADDTETQIQRQEFLSRRVINQEADD 713
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10207.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQ55_ECTSI8.000e-1452.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YKJ1_AURAN4.450e-837.61Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3H5E0_9STRA1.790e-539.39Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6U4EFG3_9STRA5.270e-535.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10207contigS-dermatodea_contig10207:3142..6036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007430.1
Exons2
Model size356
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10207.149.1prot_S-dermatodea_contig10207.149.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10207 3235..5995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.0119388-UTR-S-dermatodea_contig10207:3141..32341622924145.0119388-UTR-S-dermatodea_contig10207:3141..3234Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10207 3142..3234 +
1694079048.4206088-UTR-S-dermatodea_contig10207:3141..32341694079048.4206088-UTR-S-dermatodea_contig10207:3141..3234Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10207 3142..3234 +
1622924145.0500426-UTR-S-dermatodea_contig10207:5995..60361622924145.0500426-UTR-S-dermatodea_contig10207:5995..6036Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10207 5996..6036 +
1694079048.456943-UTR-S-dermatodea_contig10207:5995..60361694079048.456943-UTR-S-dermatodea_contig10207:5995..6036Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10207 5996..6036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.026654-CDS-S-dermatodea_contig10207:3234..33331622924145.026654-CDS-S-dermatodea_contig10207:3234..3333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10207 3235..3333 +
1694079048.4367452-CDS-S-dermatodea_contig10207:3234..33331694079048.4367452-CDS-S-dermatodea_contig10207:3234..3333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10207 3235..3333 +
1622924145.041606-CDS-S-dermatodea_contig10207:5872..59951622924145.041606-CDS-S-dermatodea_contig10207:5872..5995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10207 5873..5995 +
1694079048.4468706-CDS-S-dermatodea_contig10207:5872..59951694079048.4468706-CDS-S-dermatodea_contig10207:5872..5995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10207 5873..5995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10207.149.1

>prot_S-dermatodea_contig10207.149.1 ID=prot_S-dermatodea_contig10207.149.1|Name=mRNA_S-dermatodea_contig10207.149.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp
MMAIFAVFVKDVPYDVSVQLQRQAFITSKVIDQVPDEMRAPLKTAGRRGI
DVEQGDDRPPPPELSSPKYSLCC*
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mRNA from alignment at S-dermatodea_contig10207:3142..6036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10207.149.1 ID=mRNA_S-dermatodea_contig10207.149.1|Name=mRNA_S-dermatodea_contig10207.149.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2895bp|location=Sequence derived from alignment at S-dermatodea_contig10207:3142..6036+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTGCCAGATATTCTTCACGGCGGACAGGTGGGACTGGAGCCCCGAGGA
CATTGTGTGGGGTTTCGTGGGGTGGCAGTACGTCATCTTCACGATGATGG
CGATCTTCGCTGTATTCGTGAAGGATGTGCCTTACGATGTTTCTGTCCAG
CTCCAGAGGCAGGCCTTCATCACCTCAAAGGTTATCGATCAGGTGAGAGG
CAGCCGTCCATTCCCTCAAAACGTTGTCCAAATTGTACCTACTGTAGCAC
ATGTGTTTACTGTGCAGAATAACTGTTGGGATAACCCCCAAGAATTTATG
TTGACCGGCGGTGCATGTCTACGCGGGGCGGGGGATCCATGCTGACTCAC
GATTTTGAAGATTTTAGGTCTTGTTGTTCGATGTGTGTATAAGCGCTATT
AATCTATTAACACATCAACTGGTGTACACTTACAGTTCCCCCTTGCACAT
TTTTTACTGAGAGAGTATAGGACGTACCTACTCTCGGCTTCCCCTGGAGC
TAGTGTGCCCGTGAGTTAAGCATGTACATGTGACCTAAATTTTGATTTTT
ATATACAGAAAATGTTATCGATCAGATGAAGCAGAAGTTCATCACCTCAA
AGGTTATCGATGGATCAGGTGAGAGACAGCATCTCACCACCTCAGAGGTT
GTGGATCAGGTGTTTAACAATATGGATAATACTTATCTTGATTTGATTTA
TGTTTAATAAAAAAGTGACCTACAGTACAAATATCACATATGAGAGAAAT
ACAGATGCTGGTTTTAAAAAAAAATAATGTATATCTGAAAATTGTGTTAG
CATATGTATCCGTTCGGAGATAAACAGTCGAAAATCACACAGAAAACAAG
ATAATAGGTACTATGATAGCTCTATACAAACCACGTCAGCCATAAATCTT
GTAGCTCGTGCTTGTGTCATCGAACATTGTACTGATAGTTGTCCTGTGGA
TCAGATGGTCAGGTGCTCCGAGCGGCGCGCGGGTTCTATCTCTGTCATGT
CTGGATATATCAGTTTTTGTTCGGTGTAGGGGTGCTGGACGTCACATGCT
CTTGTGCCTTCATGTGCCCACGGGCGGGAAAAGCATCCACTTTTTTTGCA
GTTTCAAAAATGGCGGGCCGGTCGGTTGTACGTGTGACAATCAACCAATC
AAATCAATCAAATACAAGTATTACATGTGTATACTTTAAACCAAGCCAAA
CTTAAGCCACCAAGCACTCTCACTGACCTGCCAGGACCGAGAGAGAAGAG
CTCAAAGCCGATCATACCCGCCATTTCCGTCATTCGCTGCCCCGAAAATT
CCAAGAAAGGGTTGAGCTCCGAAATGGCGCTGATGAACCCAAATGCGCGA
TATCGATCAAACCCCTATATTACTTCTTTGCGTGTGTACTATATAGGTAA
TTCCGCAGGCTGTTTGTCGACCTCTCGATTTCTCATCTTACCACGAGCGG
GATCGGCAACCATTGATTGGTGGGCCGGTCGGTTGCGAGTGTGGTTTCCA
ATCAATCAACCAATCGACTCAATCAAATCGGACGCGACGACCTTTGATTG
ATTGATTGATGAATTGGTTACCACACTATTTAATAGTTTCAAACGACCGG
CCCGCCAATGGCTGCCGGTCGCGCCCGCTCGTGGTCGGATGAGAAATCGT
AAACTTACAAAAAGCGAGGGAGAAATATACATACACACATACATACATAA
ATACATAGATTAAGACCTGCCTGCTGCCTTTTGAGGTTCAATATGGGTTT
CGTCGAGGTAGGGTTGACTCTTGTGGCATGGAGCTGCAATACTGCTATAC
ATCGATGTGTAGGGAATGGGGTTCAAAACCTCTTACATTCTGAGCCCGCC
ATGGTGGGAGGTGTGGCATGTGGAGCTCCGTGTGACCCCTACTTCCTGCA
AAATGTTTTCCATGAGTGATACGGTATGGACACCCCCCGCCCCCACCACA
CCCTTCGTGTGAAACGCAGCTTGGCAGGCGAAAACACACCCGGCATATCA
TACCGCACCGTCCCGGCATTGTTGAGATACATGGTCTATGTTCGTATGGG
TATGGCATGCGCTAAACGTAAGTACGCCCTTCTCCCAAAATTGGTCCAAA
ATGGCGAGACTTGAGTTAGATATATTATACATAGTAGAGGAAAAGGTTTT
GGGCAACGTTTGACAAAGTAACAAGGAACGAACGGCCATCGCCGATGGAT
TATGTGGGAACAATGCTCCACCCTGCCGAGGAGCCGTGGTCAACGGCCAA
ACAGCTAATAACGCGTACCCCCCCCCCCCCACGAAAATACAATGATTCCA
AAGTGACAGAGCGGGCGTTGGGGTACTGTCCCACCTTTTCAAAAGGGAAG
ATGGTCCACGCTACACCTATGGAGGCTTGCGCTGTGTGTGATGCCATGTT
TTCATGTCATGTACGATTTCGTATAGTTTTATGATCAGAGTGTCCCGGGC
GATAGTGTCTGGTGGTGTAAGTTATATACCCCCACCCCCACCTGGTCCGG
CGAAAACCCGGCGTGCTCCGTCCCGCCTTTGTAGGGGTGCGAGGTCTATA
GTCCAACGACTACGGCATGCACGATCAATTGAGGAAAATGAGCACCCCCA
CCCGTATGCATGCATGATCAATGAGTACACCCCCACCCGTATGGATACGA
CATGAGTTTAACATAAGTACACCCCCCTCCCGTCGCGCGCCGTGCCTCTC
AATGCGGTATCCTCCTGCCAACGGAATGCAGGTCCCTGACGAAATGCGCG
CGCCGCTGAAGACAGCGGGGCGAAGGGGCATCGATGTCGAGCAAGGAGAT
GACCGCCCACCCCCACCGGAGCTGTCCTCACCAAAGTACTCATTGTGCTG
CTGACGCACCTGTTCCCGTTTTGCCGTGTGCGGCGCCCCCTTTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10207:3142..6036+

>mRNA_S-dermatodea_contig10207.149.1 ID=mRNA_S-dermatodea_contig10207.149.1|Name=mRNA_S-dermatodea_contig10207.149.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig10207:3142..6036+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGCGATCTTCGCTGTATTCGTGAAGGATGTGCCTTACGATGTTTC
TGTCCAGCTCCAGAGGCAGGCCTTCATCACCTCAAAGGTTATCGATCAGA
TGATGGCGATCTTCGCTGTATTCGTGAAGGATGTGCCTTACGATGTTTCT
GTCCAGCTCCAGAGGCAGGCCTTCATCACCTCAAAGGTTATCGATCAGGT
CCCTGACGAAATGCGCGCGCCGCTGAAGACAGCGGGGCGAAGGGGCATCG
ATGTCGAGCAAGGAGATGACCGCCCACCCCCACCGGAGCTGTCCTCACCA
AAGTACTCATTGTGCTGCTGAGTCCCTGACGAAATGCGCGCGCCGCTGAA
GACAGCGGGGCGAAGGGGCATCGATGTCGAGCAAGGAGATGACCGCCCAC
CCCCACCGGAGCTGTCCTCACCAAAGTACTCATTGTGCTGCTGA
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