mRNA_S-dermatodea_contig10202.148.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10202.148.1 vs. uniprot
Match: A0A835SB77_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SB77_CHLIN) HSP 1 Score: 65.1 bits (157), Expect = 8.880e-8 Identity = 49/161 (30.43%), Postives = 69/161 (42.86%), Query Frame = 1
Query: 376 GEPAKHRLLRALTEAYARYEGQYDWVAVGDDDTVFMYNRARAFLKD--IDHTQPVAIGRV---------DGIRPTGRPGRDLHC----YSPEQKANTSDALAPRSCCKDFTR----PCEVPIAGDH----LQILDYGPGGLFWPYGGTGVFLSAGVMERVA 789
G P RL+ A A+ +Y G+Y W+ +GDDDT+F A L++ + +T P+A+ G R RDL C + A D L R T PC +P + D P G + YGG GV LS G++ER+A
Sbjct: 17 GIPGSLRLVLAPLLAHRKYAGKYKWMLLGDDDTLFSLTAVMAMLREMRVSYTDPIAVSDFLVHCHFESGGGKRWKAPVTRDLRCPGAAAAXXXAAGPLDMLTGRRSAAGSTSLPTPPCMLPPERTQPPKFTEAPDCPPEGQTYFYGGAGVILSHGLLERLA 177
BLAST of mRNA_S-dermatodea_contig10202.148.1 vs. uniprot
Match: A0A835VQQ7_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VQQ7_CHLIN) HSP 1 Score: 62.4 bits (150), Expect = 5.740e-7 Identity = 49/153 (32.03%), Postives = 70/153 (45.75%), Query Frame = 1
Query: 376 GEPAKHRLLRALTEAYARYEGQYDWVAVGDDDTVFMYNRARAFLKD--IDHTQPVAIG------RVDGIRPTGRPGRDLHC--YSPEQKANTSDALAP-RSCCKDFTRPCEVPIAG----DHLQILDYGPGGLFWPYGGTGVFLSAGVMERVA 789
G P R + A A+A GQY W+ +GDDDT+F L + + HT+P+AI R + G PG + + + + T+ A AP + T PC +P A Q D P G YGG GV LS G+++R+A
Sbjct: 26 GMPTSLRHVLAPLLAHAATGGQYKWLLLGDDDTLFSLPAVLGLLAEMRLPHTEPLAISDFLVHCRYELSTKPGTPGAKRYTAPVTRDGRCPTAPAPAPAKGAAGPPTPPCILPPAAAQPPSFRQQPDCPPEGRTSFYGGAGVILSHGLLQRLA 178
BLAST of mRNA_S-dermatodea_contig10202.148.1 vs. uniprot
Match: A0A2K3E514_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E514_CHLRE) HSP 1 Score: 62.0 bits (149), Expect = 9.380e-7 Identity = 44/159 (27.67%), Postives = 67/159 (42.14%), Query Frame = 1
Query: 376 GEPAKHRLLRALTEAYARYEGQYDWVAVGDDDTVFMYNRARAFLKD--IDHTQPVAIG--------RVDGIRPTGRPGRDLHCYSPEQKANTSDALAPRS--------CCKDFTRPCEVPIAGD----HLQILDYGPGGLFWPYGGTGVFLSAGVMERV 786
G P RL+ + A+ +Y G+Y W+ +GDDDT+F A L++ + H P+AI R RDL C + A P + ++ T PC +P + D P G + YGG G+ LS G++ER+
Sbjct: 46 GIPGSLRLVMSPLLAHRKYAGKYKWMLLGDDDTLFSLTAVMAMLREMRVSHIDPIAISDFLVHCRFESSNKRWKAPVTRDLRCAAATAAXXXXXAADPLAGMGSGGSRMSQEPTPPCMLPPERTGPPRFAEAPDCPPEGQTYFYGGAGIILSHGLLERL 204
BLAST of mRNA_S-dermatodea_contig10202.148.1 vs. uniprot
Match: A8JFY2_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JFY2_CHLRE) HSP 1 Score: 62.0 bits (149), Expect = 1.440e-6 Identity = 44/159 (27.67%), Postives = 67/159 (42.14%), Query Frame = 1
Query: 376 GEPAKHRLLRALTEAYARYEGQYDWVAVGDDDTVFMYNRARAFLKD--IDHTQPVAIG--------RVDGIRPTGRPGRDLHCYSPEQKANTSDALAPRS--------CCKDFTRPCEVPIAGD----HLQILDYGPGGLFWPYGGTGVFLSAGVMERV 786
G P RL+ + A+ +Y G+Y W+ +GDDDT+F A L++ + H P+AI R RDL C + A P + ++ T PC +P + D P G + YGG G+ LS G++ER+
Sbjct: 102 GIPGSLRLVMSPLLAHRKYAGKYKWMLLGDDDTLFSLTAVMAMLREMRVSHIDPIAISDFLVHCRFESSNKRWKAPVTRDLRCAAATAAXXXXXAADPLAGMGSGGSRMSQEPTPPCMLPPERTGPPRFAEAPDCPPEGQTYFYGGAGIILSHGLLERL 260
BLAST of mRNA_S-dermatodea_contig10202.148.1 vs. uniprot
Match: A0A835T3T0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T3T0_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 3.400e-6 Identity = 49/173 (28.32%), Postives = 68/173 (39.31%), Query Frame = 1
Query: 376 GEPAKHRLLRALTEAYARYEGQYDWVAVGDDDTVFMYNRARAFLKD--IDHTQPVAIG--------RVDGIRPTGRP-GRDLHCYSPEQKANTSDALAPRSCCKDF-------------------TRPCEVPIAGDHL------QILDYGPGGLFWPYGGTGVFLSAGVMERV 786
G P RL+ A A+ +Y G+Y W+ +GDDDT+F A L++ + HT P+AI DG R P RDL C TRPC +P +H + D P G + YGG G+ LS G++ER+
Sbjct: 112 GVPGSLRLVLAPLLAHRKYAGKYKWMLLGDDDTLFSLTAVMAMLREMRVSHTDPLAISDFLVHCRFEADGKRNWKAPVTRDLRCPGAAAXXXXXXXXXXXXXXXXXXLDGXXXXXXXXXXXXXXPTRPCMLPP--EHTGPPRFREAPDCPPEGQTYFYGGAGIVLSHGLLERL 282 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10202.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10202.148.1 >prot_S-dermatodea_contig10202.148.1 ID=prot_S-dermatodea_contig10202.148.1|Name=mRNA_S-dermatodea_contig10202.148.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=377bp MPSPGPPRSTAYIKRGAGGIKMAVKMAMVLLASCASPASANEVTVVIDPPback to top mRNA from alignment at S-dermatodea_contig10202:93..4558- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10202.148.1 ID=mRNA_S-dermatodea_contig10202.148.1|Name=mRNA_S-dermatodea_contig10202.148.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4466bp|location=Sequence derived from alignment at S-dermatodea_contig10202:93..4558- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10202:93..4558- >mRNA_S-dermatodea_contig10202.148.1 ID=mRNA_S-dermatodea_contig10202.148.1|Name=mRNA_S-dermatodea_contig10202.148.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at S-dermatodea_contig10202:93..4558- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |