mRNA_S-dermatodea_contig1020.146.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1020.146.1
Unique NamemRNA_S-dermatodea_contig1020.146.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: D7FSF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF5_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 6.180e-94
Identity = 172/284 (60.56%), Postives = 178/284 (62.68%), Query Frame = 1 
Query:    1 QLLETFPLEALMKKVQPKGVGLRCEIHRRNGGQLTADGWEWEDAWDRLPADMRLKVAAIDVDALEASMHQATSTHRFCADCKHNVVTAFDILTCKCDLADIDNEDEFLPDLFWPFAGRVGPAPDDVTGQKALLSCPLEDVEELICWHEHFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRTHIEGSGRRLRSLGGGTGSAWTAGFGG-----GPSACPGCSETADPGCPMCGGTGVSLSELGFVDDDDKKAKT 837
            QLLETFPLE LMKKVQPKGVGLRCEIHRRNGGQ  ++GWEWEDAWDRLPADMRLKVAAIDVDALEA+MHQ                                                                    DVEELICWHE FDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLR+ YHNHLAQVQGEQYLFALVL AIRTHIEG    +    GG G     G GG       S+CPGC  TADP      GTGVSLSELGFVD  DKKAKT
Sbjct:   90 QLLETFPLEPLMKKVQPKGVGLRCEIHRRNGGQAISEGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQ--------------------------------------------------------------------DVEELICWHEDFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRTHIEGGCGGVGCKNGGDGG----GRGGDKRPSASSSCPGCGRTADPXXXXXXGTGVSLSELGFVDGHDKKAKT 301
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: A0A835YPU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU0_9STRA)

HSP 1 Score: 241 bits (614), Expect = 7.250e-70
Identity = 132/251 (52.59%), Postives = 156/251 (62.15%), Query Frame = 1 
Query:    4 LLETFPLEALMKKVQPKGVGLRCEIHRRNGGQ--LTA------------------------------DGWEWEDAWDRLPADMRLKVAAIDVDALEASMHQATSTHRFCADCKHNVVTAFDILTCKCDLADIDNEDEFLPDLFWPFAGRVGPAPDDVTGQ-------KALLSCPLEDVEELICWHEHFDSR-EYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRT 636
            LLE FPL A++KKVQP    LRC +HRR+     LTA                              DGWEW DAWDRLP   R KVA ID   LE+++H ATS HRFCADCKHNVV AFD+LT + D + IDN +E+  +LF PF GR+ P      G        + +L C +EDVEELICWHE FDS+ EY  S QRHAATLEHGQRE+RSIVGS+LLSQLR+ +  H A+ Q EQYLF L + AIRT
Sbjct:   84 LLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRT 334
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.150e-54
Identity = 111/253 (43.87%), Postives = 154/253 (60.87%), Query Frame = 1 
Query:    1 QLLETFPLEALMKKVQPKGVGLRCEIHRR----------NGGQLTA----------------------DGWEWEDAWDRLPADMRLKVAAIDVDALEASMHQATSTHRFCADCKHNVVTAFDILTCKCDLADIDNEDEFLPDLFWPFAGRVGPAPDDVTGQKALLSCPLEDVEELICWHEHFD--SREYTRS-SQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRTHIEGSG 654
            QLL+TFP+ +++KK+QP G   RC++HRR          +GG   A                      D W+WEDAW+R+P ++R +VA +   A EA++HQAT +++FC DCK+NVV A DIL  K  L   DNE+E+  ++F P   RV    +  T +  +L C + DVE+LI +HE F   S+E   S SQRHA+TL+ GQRE+RSI+G ++LSQLRS +H   AQVQ EQYLF LV+ A+RT +   G
Sbjct:   74 QLLDTFPMSSVLKKIQPMGSAQRCQLHRRLISLSLAGVGSGGGHRAGDXXXXXXXXXXXXXXXGVGSVDSWDWEDAWERMPPNLRNEVATVKAPAFEAAVHQATESNKFCPDCKYNVVQAHDILMGKIGLEGSDNEEEYDEEIFLPIEDRVFEG-ESGTSEDKMLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAAHG 325
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: A0A4D9CZ38_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ38_9STRA)

HSP 1 Score: 171 bits (432), Expect = 7.320e-43
Identity = 114/330 (34.55%), Postives = 144/330 (43.64%), Query Frame = 1 
Query:    1 QLLETFPLEALMKKVQPKGVGLRCEIHRRNG---------------GQLTADG-WEWEDAWDRLPADMRLKVAAIDVDALEASMHQATSTHRFCADCKHNVVTAFDILTCKCDLADIDNEDEFLPDLFWPFAGRV-------GPAPDDVTGQKAL---------------------------------------------------------------------------------------------LSCPLEDVEELICWHEHFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRTHI 642
            QLLE FP   L KKV   G   RC +HRR G               GQ   DG W+ E AW RLP   +  V  I++  L+ +MH AT++HRFCADCKHNVV A DILT +  + ++D  ++   +L+ PF GRV       G  P +  G+  +                                                                                             L C +EDVE LI W + FDS+EY  S QRHAATLEHGQRE+R+I+GSVLLSQLR+ +H   A  Q E YLFAL + AIRT +
Sbjct:   25 QLLERFPPPPLPKKVSAHGAHGRCPLHRRMGSGAGWGAGGWQHHHYGQXXXDGGWDREAAWARLPGAAKEGVGKIELGTLQTAMHAATASHRFCADCKHNVVMALDILTERVGVGEVDEGEDVDMELYRPFMGRVLDRSAAYGDVPPEKEGRGGIRRGSVKEGGREGDXXXXXXXXXXXXXXXXXXXXXXXXGERMKIELEDIGHEKRRKSASKGESGQEDAGAVEAVSAAGGGARPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEYATSGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQL 354
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: A0A7S2S925_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S925_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.540e-41
Identity = 89/223 (39.91%), Postives = 133/223 (59.64%), Query Frame = 1 
Query:    1 QLLETFPLEALMKKVQPKGVGLRCEIHRRNG---GQLTADGWEWEDAWDRLPADMRLKVAAIDVDALEASMHQATSTHRFCADCKHNVVTAFDILTCKCDLADIDNE-DEFLPDLFWPFAGRVGPAPDDVTGQKALLSCPLEDVEELICWHEHFDSREYTRS-SQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRTHIEGSG 654
            QL+++FP   + ++VQP+    RC +HRR G     L  + W+W DAW+RLP+ +R +VA +DV  LE+++ +ATS+  FC DCK NV+  FD+L  + DL D+    +++ P LF    GRV     +  G+   L C  ++V  LI   E F+ +E T   +QRHAATL+  Q EIR+ +G+ LL QLR+    H   VQGEQ+L  L+L  I+  ++  G
Sbjct:  104 QLMQSFPHSNVFEQVQPEKGAKRCALHRRAGVVASALPDNSWDWRDAWERLPSPIRREVALVDVGVLESAVQRATSSKHFCPDCKPNVIAMFDVLVGRYDLLDLPGAIEDYNPVLFDSLMGRVITEQLNDGGRSEFLHCREDEVANLIADFEAFEIQELTSPVNQRHAATLDQAQEEIRATIGAQLLVQLRTASQAHATAVQGEQFLLGLILDFIQRAVDTDG 326
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: A0A6H5JR47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR47_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 7.000e-29
Identity = 133/260 (51.15%), Postives = 143/260 (55.00%), Query Frame = 1 
Query:  721 SACPGCSETADPGCPMCGGTGVSLSELGFVDDDDKKAKTXXXXXXXXXXXXX----------------------------AAKKCQDEAGDRASGAVGGECNGH----GVNSHAGEEAVQGGHSNRQAKTNGQRPKPRSRDLAGGRAGGRTSAKAQAXXXXXXXXXXXX----AGSSGMESAGSLLSMLXXXXXXXXXXXXQVNG-------EDGDEGIDEDLVREMERLRIQKARTDVQRTRAALRSNLQKNFDQLLVS 1371
            S+CPGC  TADP CPMCGGTGVSLSELG VD  DKKAKTXXXXXXXXXXXXX                            AAK          S   G   NGH    G  SH+  +  +GG S    K NGQ+                       XXXXXXXXXXXX    AGS GMESAGSLLSML              +        EDGD GIDED+VREMERL++QKARTDVQR+RAALRSNLQKNFDQLLVS
Sbjct:   22 SSCPGCGRTADPACPMCGGTGVSLSELGLVDGHDKKAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEAATTAAKXXXXXXXXXXSNG-GQRANGHQETAGGRSHSQPQDNKGGGS----KPNGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRAGSCGMESAGSLLSMLDDANGGANGGGGGRHDGDLFDYYEDGDSGIDEDIVREMERLKMQKARTDVQRSRAALRSNLQKNFDQLLVS 276
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: W7TQZ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQZ3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.300e-21
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:  340 PFAGRVGPAPDDVTGQKALLSCPLEDVEELICWHEHFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRTHI 642
            P  G   PA         +L C +EDVE LI W + FDS+E+  S QRHAATLEHGQRE+R+I+GSVLLSQLR+ +H   A  Q E YLFAL + AIRT +
Sbjct:  157 PSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQL 257
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: A0A7S2ATP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.140e-17
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 QLLETFPLEALMKKVQPKGVGLRCEIHRR-------------NGGQLTADGWEWEDAWDRLPADMRLKVAAIDVDALEASMHQAT 216
            QLL TFPL +++KKVQP G+ LRC +HRR             +       GW+WE+AWDRLPA++R KVA IDV AL  ++H AT
Sbjct:   61 QLLTTFPLSSVIKKVQPTGMNLRCAVHRRALSATLTMGHVHSHTASEAGGGWDWEEAWDRLPANLRKKVATIDVSALSTAVHHAT 145
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: D7FQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ14_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.630e-16
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:  394 LLSCPLEDVEELICWHEHFD--SREYTRS-SQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQYLFALVLHAIRTHIEGSG 654
            +L C + DVE+LI +HE F   S+E   S SQRHA+TL+ GQRE+RSI+G ++LSQLRS +H   AQVQ EQYLF LV+ A+RT +   G
Sbjct:    1 MLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAAHG 90
[Close]
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Match: D7FQ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ15_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-7
Identity = 30/87 (34.48%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:    1 QLLETFPLEALMKKVQPKGVGLRCEIHRR-----------NGGQ---------------------LTADGWEWEDAWDRLPADMRLK 165
            QLL+TFP+ +++KKVQP G   RC++HRR            GG                       + D W+WEDAW+R+P ++R+K
Sbjct:  120 QLLDTFPMSSVLKKVQPMGSAQRCQLHRRLISLSLAGVGSGGGHRGGXXXXXXXXXXXXXXXXXXXSVDSWDWEDAWERMPPNLRVK 206
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1020.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FSF5_ECTSI6.180e-9460.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPU0_9STRA7.250e-7052.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KD93_9PHAE2.150e-5443.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CZ38_9STRA7.320e-4334.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2S925_9STRA3.540e-4139.91Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JR47_9PHAE7.000e-2951.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TQZ3_9STRA1.300e-2154.46Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2ATP2_9STRA1.140e-1749.41Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D7FQ14_ECTSI2.630e-1655.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ15_ECTSI1.510e-734.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1020contigS-dermatodea_contig1020:17356..23487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score71.6
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog8364.ENSXETP00000004356
Preferred nameGGNBP2
GOsGO:0000003,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001932,GO:0001933,GO:0001944,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006469,GO:0007275,GO:0008150,GO:0008285,GO:0009790,GO:0009792,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0019220,GO:0019222,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0033135,GO:0033137,GO:0033139,GO:0033140,GO:0033673,GO:0042127,GO:0042325,GO:0042326,GO:0042509,GO:0042532,GO:0043009,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044092,GO:0044424,GO:0044464,GO:0045859,GO:0045936,GO:0046425,GO:0046426,GO:0048513,GO:0048519,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061097,GO:0061099,GO:0061458,GO:0065007,GO:0065009,GO:0072358,GO:0072359,GO:0080090,GO:1902531,GO:1902532,GO:1904892,GO:1904893
EggNOG free text desc.negative regulation of peptidyl-serine phosphorylation of STAT protein
EggNOG OGs28HQM@1,2QQ20@2759,38F40@33154,3BCWJ@33208,3CXKI@33213,47ZTD@7711,491VE@7742
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_000650.1
Exons4
Model size1404
Cds size1404
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1020.146.1prot_S-dermatodea_contig1020.146.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1020 17356..23487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.7641068-CDS-S-dermatodea_contig1020:17355..181741622924144.7641068-CDS-S-dermatodea_contig1020:17355..18174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 17356..18174 -
1694079048.1804206-CDS-S-dermatodea_contig1020:17355..181741694079048.1804206-CDS-S-dermatodea_contig1020:17355..18174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 17356..18174 -
1622924144.7728655-CDS-S-dermatodea_contig1020:20059..202301622924144.7728655-CDS-S-dermatodea_contig1020:20059..20230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 20060..20230 -
1694079048.1897078-CDS-S-dermatodea_contig1020:20059..202301694079048.1897078-CDS-S-dermatodea_contig1020:20059..20230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 20060..20230 -
1622924144.781018-CDS-S-dermatodea_contig1020:20814..210011622924144.781018-CDS-S-dermatodea_contig1020:20814..21001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 20815..21001 -
1694079048.1973777-CDS-S-dermatodea_contig1020:20814..210011694079048.1973777-CDS-S-dermatodea_contig1020:20814..21001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 20815..21001 -
1622924144.7894883-CDS-S-dermatodea_contig1020:23260..234871622924144.7894883-CDS-S-dermatodea_contig1020:23260..23487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 23261..23487 -
1694079048.2051065-CDS-S-dermatodea_contig1020:23260..234871694079048.2051065-CDS-S-dermatodea_contig1020:23260..23487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1020 23261..23487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1020.146.1

>prot_S-dermatodea_contig1020.146.1 ID=prot_S-dermatodea_contig1020.146.1|Name=mRNA_S-dermatodea_contig1020.146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=468bp
QLLETFPLEALMKKVQPKGVGLRCEIHRRNGGQLTADGWEWEDAWDRLPA
DMRLKVAAIDVDALEASMHQATSTHRFCADCKHNVVTAFDILTCKCDLAD
IDNEDEFLPDLFWPFAGRVGPAPDDVTGQKALLSCPLEDVEELICWHEHF
DSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRSNYHNHLAQVQGEQ
YLFALVLHAIRTHIEGSGRRLRSLGGGTGSAWTAGFGGGPSACPGCSETA
DPGCPMCGGTGVSLSELGFVDDDDKKAKTKSKKKRERKARAKAAKKCQDE
AGDRASGAVGGECNGHGVNSHAGEEAVQGGHSNRQAKTNGQRPKPRSRDL
AGGRAGGRTSAKAQAAAAAAAAAARQRAGSSGMESAGSLLSMLDDSNNDR
GGGGGQVNGEDGDEGIDEDLVREMERLRIQKARTDVQRTRAALRSNLQKN
FDQLLVSSTAREPGGKA*
back to top

mRNA from alignment at S-dermatodea_contig1020:17356..23487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1020.146.1 ID=mRNA_S-dermatodea_contig1020.146.1|Name=mRNA_S-dermatodea_contig1020.146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6132bp|location=Sequence derived from alignment at S-dermatodea_contig1020:17356..23487- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTGCTGGAAACGTTTCCCTTGGAGGCCTTGATGAAGAAGGTGCAGCC
GAAAGGGGTAGGGCTGAGGTGCGAGATACACCGACGCAACGGGGGTCAGT
TGACCGCGGACGGGTGGGAGTGGGAGGACGCTTGGGATAGGCTTCCCGCC
GATATGCGACTGAAGGTGGCGGCCATCGACGTCGACGCCCTTGAGGCTTC
GATGCACCAGGCTACTTCCACCCATAGGTAAGGAGGCAGGACGGGGAGAT
GGGGGAGAGGAGAGGAGTAGAGGGAAATGCACATGAAAGATACAACGCCA
GGATGTCGCTGAGGACAAAGACTCTTGTACTAAGCATCATAACCATATAG
CGCCATACATGATACGACACCATAGCCTCATACGTAATAAGTTATTAATA
GACTCAATACGTGTAGATTTGAGCACCTTCCCTCTTGAAAAGCTGGGACC
CCAACGCTCGCTCTATGTTTTTGAAATATATGTTTTATAGGGGAGGAGGT
AAGGGAGGCCGCGCCATAAGGGGAGCGCTTGGTGGAGTGCGATTCGCCTG
CGAAGGGTTTTACTGAGTAGGCCTACAGTGGGGTGGATGCATGAAAATTT
TGTCGGATCAAGCGAGAATGTCTCTAATAGTTTAACCCTTTTGGTACAGT
ACTAGCCCCCTACACTGTTTGGAGCGGCGGTTATCACGTATGTAATGAGG
CGTGCTCTAAGGGGAGCCCTGGGGGACGGAACCCACGGCCTATGGCGCAG
GCTATAAGAAAGGAAGGAGCCCAAGGGAACCGGGGCTGTCGTAGCTGTCG
ACTGGCGTCAAAGGAGTTTTTGGTCGTTTCGGAGAGCCCTACTATTAACA
GTATATTAATAATATTATAGTACCTAAAGGGTTAAATTGCTCCTCTGTGA
GTATTCACATAAGGGCGAGGGTATTATCATACCGCGCCGGAAAGCGTGTG
CCCGAGGGTGTTTCCACATATAAGGTATAAGGTATAAGGTATAAGGTATA
AGGTATAAGGTCTATGGTCGTGAAAAGGGCAGAAGATCGGTTTTGTTCCT
CACAGCTGCGTCTGGCGTCTTCGTGTTGTGCGATGGGTAATGCCGAGGAG
ATCGCTCGGTCAGAAAGCGAGTCGATCGAGAAATTCATTTTTTTATACGC
TAGAAGTAGAGTGTTCTGATTAATTTTCTCCTTGGCTCTTTGCGTGTCTG
ACCACAAGTCGGATAGGTCGGATTAAGCCGATCGGCTGTACGTGTGCAAA
TCAAATCAAATCAAAATAAATCAAATCAAAATAAATCAAATCAGTGGAAT
TATGACGGCACAGGGAATAGTGTAGATTTACCTGTTTTGGGGCCCTGTTG
TTATCTGTTGTGGTTCATCGGCTTATGCAGGCACATGATGATTACGATAA
CTCATACATCGTGAATGCGAAGATGGTGTTTTGCATAGCCGAGATATATA
TACCGATCGACAAGAAGCGTCGGATCGCTATTGGAGTGCCGCCCTCATCG
ACACGACACTGTCACCCGCAGCATGATTCGTCCTCGAGGGTATGCGTTAT
GCATGGCGTCTCTTTAGCCTTTGCAGTACCGAGGTTGGCAGTAAGTAGCA
ACCTCTGTCGTTAACGCAGGAACAACACTACGATTGTAGTTCGTCGGCTT
GCTGCTGTGATATAAGTATAGGAGGGTGCGTTTAAAATTGTGCCCTCTGC
CCGGTTGGTTTATGGACCAATGGATGCGCAGGGGCGCATGCGAAAGGCTG
ATCGGAGGGTTCCTTCCCCCGTCGCACTTGACGGAGAATATAATGAGAAT
ATAATGAGGGGACGCCAAATATTAGGGAGCGCACGCAAAAAATCGATCGT
TCCTATCGCAGTCGTTCCTATCGCAGACATGTCTCACATATTAATAGTGC
AACCCCTCTCGTGTAGCCCCGTCCGCAGAAGCGGAGGATTCCGAGTTTTA
AGACCGGGGCGTCTCCGTTGACGTGTCCTGTAAATATATAGTGCCGCCTC
TCTTTTCGCTCTTTTTTGCGATATTCTGTTTTAAGATTTCGGAAGTGAGG
GGACGTGATTGGCTTGGAGGCAGGTCGAACGGTGGCTTCGAGATGTGATG
TGTGTCAGACGGGAGTTGTTTGCTTTGGACAACGAGCTGTGCGGAATGTG
GTTTGGTATACAGTTAATGAAAAGAAAGGGCGGTTTATTCACAATTTTCG
CGCTTGCGGGCGGGAAAACGCAAGATGACCTAACATCGGCCCCCCAACAA
CCTATAACGCGATGATGACAGCAAAAACTCTAATCTGCTTTCAGGACAAT
TTTATAGCCACGCCTAAAATACACACACTATATATGTTGCATGGCAAATT
TAAAGCCTCGCAAGGATCTGGGTAAACCTCGCCCATCACCGTGGCTGCAC
ATCGTTGGCTTCTGCCCCTCCGTCCTCTTACTACTGTACGCATCGTGGCC
CCCTCTCCGCCGTGCGCGGATTGCTTCTTGGGGCAGGTTCTGCGCCGATT
GTAAGCATAACGTAGTGACGGCGTTCGACATCCTCACTTGCAAGTGCGAC
CTGGCGGACATCGATAACGAGGACGAGTTTTTACCGGACCTCTTCTGGCC
GTTCGCGGGCCGGGTCGGCCCTGCTCCCGACGATGTCACCGGCCAAAAGG
CCCTCCTTAGCTGCCCCTTGGAGGTACAATACATACCCTTTATGCTTACG
CGAGCAGCATGTGATGTGCTGGAATCGCGTACACTGCAATACAGAGTTGG
TTGCTTTTTGGCGCTCGTGCGGCCCACGCCGCGCCGACCGTGCCGGGAGC
CGGGAATGAGCTGCTTCTTCGTTGCACGTCGGGGTTTCCAATTCGTAGCG
TGTGGCATGTTCTTGGTCCCATTCAGCAGTCTCGTCGTTCGCCCGTTCGA
ATCAGAGAACATTGGGGCAGACAGTGGGCGTCCGGGCTGTGACCTCTTGG
CGCAATTAGGTGTTGTCGTAATTTTGAATGTTTGCGTACCGCTGCTTGGA
ATTTTAGCTCGTATAGGATGCTCGAGGCCTACGTGTGGCCGATGTCGAGC
CTGACTTTGGCGCTATACTTGGGTGTCTTGTGGTCACATGTCGACACCGC
TGGCTCGGCCAGTCACGACGTGTGAGTTGGGTGAAACTGCTCTATAGACA
ACCCCGTACCGTCTGAATACATACACAGCAGGCTGTTTGCGCACGAAAGG
TACATGACCACCGTGCTGATGGTCATGTGTCTCGATGGATCTTGCGCTGG
AACACAGGATGTGGAGGAGCTTATCTGCTGGCACGAGCACTTCGACTCGC
GAGAGTACACCCGCAGCAGCCAGCGCCACGCGGCGACTTTGGAGCACGGA
CAGCGAGAGATACGGTCGATCGTCGGGTCGGTGTTGCTATCGCAGCTCCG
ATCCAACTACCACAACCACTTGGCGCAGGTGTGTTTTGTTGTTGTTTTGA
GCAATGCCCGATTGTGAATGATTCCCTGGAGGTTTCCCAGACTCGACCGC
TTGCCGCAGAAAGCTACGAGGCACGAACGTCTCACGAGTGTTTGTTTGTC
CTGCCGAGCTCGGTACCCGCGCGGGGCGTTTGGACGCCATGTGCTCTTGT
GCCCACTCCTCTGCACGTCCTTGTGTTGGAGGCTGGCTTCCTTCCCAGAG
TGCCTTGACGTATGCGTGACCTGCCTGATGACCAGGAGCCGATCGAAATC
GCGAAGAGTCCTCAAAACGACCTGTGTGGTGTATTTATCACCACCGAACC
GAGAAACAATACGAGTTTTTTCGAGTGGAGACACAGGTGCTCATGCCCTC
CTTGCGATCCTCGCGTTATTGCCATGGTCGGTGCGCGTTGTGATACTTCT
CCGTGGTGAGAGTTGCGATATTTCTGACAAATATTAGCAATCCAGCTCAC
GCGTACACCTCCAACTCTCAGGCACACTCATTACAGAGGCACACGCTAAT
CAGCACCTAATGTGCCAAACAAGCAGTATTAAGCCCAGCATAGTATACCA
TAAATCAATATTTACTTGTATACTCTGGCCTTAACACACGACATCTGCGA
TCTTCCGGCCTGATATTTCGATCAAAAACTGAAAAATTGTTTCAAGGTGT
TCGGGCCACCGTTTGAACTTACAATTTTTAAATACGCTGTCATACGTATC
ATACTTCGAAGTACTCGTACAATTATTCAGCAGGCATTTGTTCCTTATTA
GACCGCGCGCCCCGCGGTTGAACTGGTTGACCAACAGCCCAGTAGGGGGA
AGACCCGGGTTCACATCCCGGCAGAGTCGATATTATTTATTTTCTCTACT
TCTGCCGCGGAAAGCGCGAGAGCGTGAGTAAGCAAACAATCCGAGAAATC
GGCGACCTGTGGGAGCGCCGAACCCAATGCATTCGCGATAAAGATCAAAA
GGTGAGAACCGGGGATGAGAGAGATGGGATGATCCCTTGTGACCACAGAC
GGACCTCGGAAAAGCAAGTCTATCATATATATGTGTGCCAACAACATCAG
CAACTGTGCACCTCCGTTTTATCATCAATTCGAGGGGAAACCGAAAGCAG
ACATACCCTACAAGTGTACTCTCGCAGTGAGTCGTGTAGGTGCACCGGGA
GAAGAAGTGAAACTACATTTGATCATGTACCCCCCCAACTGAGACCTACA
ACCCCCCTGCCTTTTAGGTTTGAGGTGGGGTTGGTCGAGGTAGGGTTGGC
TCTTTTCGCATGGAGCTGTAAAAGTGCTACAGCATTTACAGGGCATGGGG
TGGTTCATGCAGTATGTCCTGTGAGCTCGGAGACCTCGGTCGAAGAGTCT
TGTCTCTGCACAAAAGGACGAAACGCATCACATCCTATAGGACACCTGCT
GGACATTTGATTGTTGGAACGCCCTATTAGTAGGGCGACCATTGACTTGT
GAGTGGTACTCCGCCAGGAGAACTCATGAGCAGATTATAGTCCGAGGGTA
TCACACATAAGCCGTCATGCATGCTGTGTGCGTGTGGCGCGCAATTTGCG
TTCGCACAGAGGTCAACATCCCTCTTCTTTGTGCCACGTGGAGTATAGTC
ACGCCTGCTGAATGCGCAAGGTTTTGTTGCCCGGTATGTCCAATCGACCC
ACGGCATATGATATCGGTTTGGCGTCGCAAACGCAAGGATGGCATCTTGT
GAAACGCAGCCTGGCCGGCGAAAACCAGCTCCCGGCATATCGCTCCGACC
CGGCATTGTTGGGACGCGTGGTCCATGTCCATTTGGATACGACATGCGAT
TAACATAAGTACACCCCCCCCAACCCCCTCCACCCCCCCCGATTCTCGAT
CGCTACCGCACAGGTCCAGGGGGAGCAGTACCTCTTCGCCCTCGTGCTGC
ACGCCATTCGAACCCACATAGAGGGATCTGGCCGACGCCTACGCAGCTTG
GGCGGAGGCACCGGGAGCGCGTGGACGGCGGGTTTCGGCGGAGGCCCGTC
GGCGTGTCCCGGCTGCAGTGAGACGGCGGATCCCGGCTGCCCCATGTGCG
GCGGTACCGGCGTGTCGCTCTCCGAGCTGGGATTCGTAGACGACGACGAT
AAGAAGGCGAAGACCAAGTCCAAGAAAAAGCGAGAGCGCAAGGCGCGCGC
GAAGGCGGCCAAGAAATGCCAGGACGAGGCCGGGGATCGAGCCAGTGGAG
CGGTGGGCGGGGAATGCAACGGACACGGCGTGAACAGTCACGCCGGAGAG
GAAGCAGTGCAGGGAGGGCATTCCAACCGCCAAGCCAAGACCAACGGCCA
GCGTCCAAAGCCTAGGTCCCGGGATCTCGCGGGGGGGCGTGCCGGCGGAC
GGACCAGCGCGAAAGCGCAGGCTGCGGCGGCGGCGGCGGCCGCAGCGGCG
CGTCAGCGCGCCGGTTCCTCGGGCATGGAGAGCGCCGGGAGCTTGCTGTC
GATGCTGGACGACTCTAATAACGACCGCGGCGGGGGAGGCGGGCAGGTTA
ACGGGGAGGATGGAGACGAGGGCATCGACGAAGATCTCGTGAGGGAGATG
GAGCGGCTGCGGATTCAGAAAGCGCGGACGGACGTGCAGCGGACGAGGGC
GGCGCTTCGGTCGAACCTGCAGAAGAACTTCGACCAGCTCCTCGTTTCTT
CCACGGCGAGGGAGCCAGGGGGCAAGGCGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1020:17356..23487-

>mRNA_S-dermatodea_contig1020.146.1 ID=mRNA_S-dermatodea_contig1020.146.1|Name=mRNA_S-dermatodea_contig1020.146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2808bp|location=Sequence derived from alignment at S-dermatodea_contig1020:17356..23487- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTGCTGGAAACGTTTCCCTTGGAGGCCTTGATGAAGAAGGTGCAGCC
GAAAGGGGTAGGGCTGAGGTGCGAGATACACCGACGCAACGGGGGTCAGT
TGACCGCGGACGGGTGGGAGTGGGAGGACGCTTGGGATAGGCTTCCCGCC
GATATGCGACTGAAGGTGGCGGCCATCGACGTCGACGCCCTTGAGGCTTC
GATGCACCAGGCTACTTCCACCCATAGCAGCTGCTGGAAACGTTTCCCTT
GGAGGCCTTGATGAAGAAGGTGCAGCCGAAAGGGGTAGGGCTGAGGTGCG
AGATACACCGACGCAACGGGGGTCAGTTGACCGCGGACGGGTGGGAGTGG
GAGGACGCTTGGGATAGGCTTCCCGCCGATATGCGACTGAAGGTGGCGGC
CATCGACGTCGACGCCCTTGAGGCTTCGATGCACCAGGCTACTTCCACCC
ATAGGTTCTGCGCCGATTGTAAGCATAACGTAGTGACGGCGTTCGACATC
CTCACTTGCAAGTGCGACCTGGCGGACATCGATAACGAGGACGAGTTTTT
ACCGGACCTCTTCTGGCCGTTCGCGGGCCGGGTCGGCCCTGCTCCCGACG
ATGTCACCGGCCAAAAGGCCCTCCTTAGCTGCCCCTTGGAGGTTCTGCGC
CGATTGTAAGCATAACGTAGTGACGGCGTTCGACATCCTCACTTGCAAGT
GCGACCTGGCGGACATCGATAACGAGGACGAGTTTTTACCGGACCTCTTC
TGGCCGTTCGCGGGCCGGGTCGGCCCTGCTCCCGACGATGTCACCGGCCA
AAAGGCCCTCCTTAGCTGCCCCTTGGAGGATGTGGAGGAGCTTATCTGCT
GGCACGAGCACTTCGACTCGCGAGAGTACACCCGCAGCAGCCAGCGCCAC
GCGGCGACTTTGGAGCACGGACAGCGAGAGATACGGTCGATCGTCGGGTC
GGTGTTGCTATCGCAGCTCCGATCCAACTACCACAACCACTTGGCGCAGG
ATGTGGAGGAGCTTATCTGCTGGCACGAGCACTTCGACTCGCGAGAGTAC
ACCCGCAGCAGCCAGCGCCACGCGGCGACTTTGGAGCACGGACAGCGAGA
GATACGGTCGATCGTCGGGTCGGTGTTGCTATCGCAGCTCCGATCCAACT
ACCACAACCACTTGGCGCAGGTCCAGGGGGAGCAGTACCTCTTCGCCCTC
GTGCTGCACGCCATTCGAACCCACATAGAGGGATCTGGCCGACGCCTACG
CAGCTTGGGCGGAGGCACCGGGAGCGCGTGGACGGCGGGTTTCGGCGGAG
GCCCGTCGGCGTGTCCCGGCTGCAGTGAGACGGCGGATCCCGGCTGCCCC
ATGTGCGGCGGTACCGGCGTGTCGCTCTCCGAGCTGGGATTCGTAGACGA
CGACGATAAGAAGGCGAAGACCAAGTCCAAGAAAAAGCGAGAGCGCAAGG
CGCGCGCGAAGGCGGCCAAGAAATGCCAGGACGAGGCCGGGGATCGAGCC
AGTGGAGCGGTGGGCGGGGAATGCAACGGACACGGCGTGAACAGTCACGC
CGGAGAGGAAGCAGTGCAGGGAGGGCATTCCAACCGCCAAGCCAAGACCA
ACGGCCAGCGTCCAAAGCCTAGGTCCCGGGATCTCGCGGGGGGGCGTGCC
GGCGGACGGACCAGCGCGAAAGCGCAGGCTGCGGCGGCGGCGGCGGCCGC
AGCGGCGCGTCAGCGCGCCGGTTCCTCGGGCATGGAGAGCGCCGGGAGCT
TGCTGTCGATGCTGGACGACTCTAATAACGACCGCGGCGGGGGAGGCGGG
CAGGTTAACGGGGAGGATGGAGACGAGGGCATCGACGAAGATCTCGTGAG
GGAGATGGAGCGGCTGCGGATTCAGAAAGCGCGGACGGACGTGCAGCGGA
CGAGGGCGGCGCTTCGGTCGAACCTGCAGAAGAACTTCGACCAGCTCCTC
GTTTCTTCCACGGCGAGGGAGCCAGGGGGCAAGGCGTGAGTCCAGGGGGA
GCAGTACCTCTTCGCCCTCGTGCTGCACGCCATTCGAACCCACATAGAGG
GATCTGGCCGACGCCTACGCAGCTTGGGCGGAGGCACCGGGAGCGCGTGG
ACGGCGGGTTTCGGCGGAGGCCCGTCGGCGTGTCCCGGCTGCAGTGAGAC
GGCGGATCCCGGCTGCCCCATGTGCGGCGGTACCGGCGTGTCGCTCTCCG
AGCTGGGATTCGTAGACGACGACGATAAGAAGGCGAAGACCAAGTCCAAG
AAAAAGCGAGAGCGCAAGGCGCGCGCGAAGGCGGCCAAGAAATGCCAGGA
CGAGGCCGGGGATCGAGCCAGTGGAGCGGTGGGCGGGGAATGCAACGGAC
ACGGCGTGAACAGTCACGCCGGAGAGGAAGCAGTGCAGGGAGGGCATTCC
AACCGCCAAGCCAAGACCAACGGCCAGCGTCCAAAGCCTAGGTCCCGGGA
TCTCGCGGGGGGGCGTGCCGGCGGACGGACCAGCGCGAAAGCGCAGGCTG
CGGCGGCGGCGGCGGCCGCAGCGGCGCGTCAGCGCGCCGGTTCCTCGGGC
ATGGAGAGCGCCGGGAGCTTGCTGTCGATGCTGGACGACTCTAATAACGA
CCGCGGCGGGGGAGGCGGGCAGGTTAACGGGGAGGATGGAGACGAGGGCA
TCGACGAAGATCTCGTGAGGGAGATGGAGCGGCTGCGGATTCAGAAAGCG
CGGACGGACGTGCAGCGGACGAGGGCGGCGCTTCGGTCGAACCTGCAGAA
GAACTTCGACCAGCTCCTCGTTTCTTCCACGGCGAGGGAGCCAGGGGGCA
AGGCGTGA
back to top