mRNA_S-dermatodea_contig10196.144.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10196.144.1
Unique NamemRNA_S-dermatodea_contig10196.144.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10196.144.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.020e-22
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:    1 VTNNADAVVVRVALDSREPYLLERRSGYHVVPLQYPPARVLLYIEVSHRAGLHLPGLLPGVVVCAPVTRTVAVVGKSKRHFNIRRVQLPLTPGRISPVYRVQSETLEKLLADLRRPIDGDLDSAAVYVALSRARSLDTLFL 423
            V +N D +V  + LD RE  +     GY VV L++ P RV ++IE    +GL LPG   GVV   P+ R V + GK+ R+F I+R QLPLT G +S V         +++ DLR+P    +D A++YVA SRA+SL+  +L
Sbjct: 1344 VCSNRDGIVRAIELDQREQ-IQNHDGGYRVVHLKHLPVRVFVHIESMDDSGLKLPGFPRGVVAFGPIERNVVLTGKNGRNFTIKRRQLPLTSGCLSSV---------RVILDLRKPPGPRVDPASLYVARSRAKSLNDTYL 1474
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10196.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K882_9PHAE7.020e-2241.13ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10196contigS-dermatodea_contig10196:6866..7703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.2e-27
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.5386965-CDS-S-dermatodea_contig10196:6865..69891622924144.5386965-CDS-S-dermatodea_contig10196:6865..6989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10196 6866..6989 -
1694079048.023472-CDS-S-dermatodea_contig10196:6865..69891694079048.023472-CDS-S-dermatodea_contig10196:6865..6989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10196 6866..6989 -
1622924144.548688-CDS-S-dermatodea_contig10196:7404..77031622924144.548688-CDS-S-dermatodea_contig10196:7404..7703Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10196 7405..7703 -
1694079048.0359972-CDS-S-dermatodea_contig10196:7404..77031694079048.0359972-CDS-S-dermatodea_contig10196:7404..7703Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10196 7405..7703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10196.144.1prot_S-dermatodea_contig10196.144.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10196 6866..7703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10196.144.1

>prot_S-dermatodea_contig10196.144.1 ID=prot_S-dermatodea_contig10196.144.1|Name=mRNA_S-dermatodea_contig10196.144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
VTNNADAVVVRVALDSREPYLLERRSGYHVVPLQYPPARVLLYIEVSHRA
GLHLPGLLPGVVVCAPVTRTVAVVGKSKRHFNIRRVQLPLTPGRISPVYR
VQSETLEKLLADLRRPIDGDLDSAAVYVALSRARSLDTLFL
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mRNA from alignment at S-dermatodea_contig10196:6866..7703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10196.144.1 ID=mRNA_S-dermatodea_contig10196.144.1|Name=mRNA_S-dermatodea_contig10196.144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at S-dermatodea_contig10196:6866..7703- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAACAAACAACGCCGATGCCGTCGTCGTCAGAGTCGCCTTGGATAGCCG
GGAGCCGTACCTCCTGGAGCGGCGCTCTGGATACCACGTCGTTCCATTGC
AATACCCTCCAGCTAGAGTCCTCCTCTACATCGAAGTTTCCCATAGGGCC
GGTCTCCATCTCCCGGGTCTCCTGCCAGGTGTCGTTGTTTGCGCCCCGGT
TACCAGGACCGTTGCTGTCGTCGGCAAGAGCAAGCGGCACTTCAACATCC
GCCGGGTGCAGTTGCCGCTCACTCCAGGCCGTATTTCACCCGTCTACAGG
TAACCTACACCCATGTATTTCTACCTTGGCTCAAGCTGTGGTAGGCCTAG
TTCCTAACGGACGCGAGTGCGGGCTGGCCATCTACCGCGCACAGTGTAAA
TATCCGACGATCAATCCACCTTGACTTGCGGACGCCATCTCCTCCTACAC
CCATTCCGAGTGTCCATATTGTTTTCGCGTACTGCCTTTTGAGCGCCAAA
CGTCCTTCCGTAGACAAAACTACCTTATTGCGTATTCGTCGGCCTGTCCT
ACTCGTTCTTGCTTCTCGATCCTATAATTGTCGTTTAGGTTGTCTTGGTT
CCACCATCATCTTGTTTCTCACGGCCCTACCCCGTGCGGATCTCCAATAG
GGACGGAATAACACAGACAGGAGTAAACAAAGTGCCCATCGCTCCTCTAG
CTTGCCCTCCTCAGAGTGCAAAGCGAAACGTTGGAAAAGCTCCTCGCGGA
CCTCCGCCGGCCTATCGATGGCGACCTTGACAGCGCTGCCGTCTACGTTG
CCCTGTCTCGCGCAAGATCCCTCGATACCCTCTTCCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10196:6866..7703-

>mRNA_S-dermatodea_contig10196.144.1 ID=mRNA_S-dermatodea_contig10196.144.1|Name=mRNA_S-dermatodea_contig10196.144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig10196:6866..7703- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAACAAACAACGCCGATGCCGTCGTCGTCAGAGTCGCCTTGGATAGCCG
GGAGCCGTACCTCCTGGAGCGGCGCTCTGGATACCACGTCGTTCCATTGC
AATACCCTCCAGCTAGAGTCCTCCTCTACATCGAAGTTTCCCATAGGGCC
GGTCTCCATCTCCCGGGTCTCCTGCCAGGTGTCGTTGTTTGCGCCCCGGT
TACCAGGACCGTTGCTGTCGTCGGCAAGAGCAAGCGGCACTTCAACATCC
GCCGGGTGCAGTTGCCGCTCACTCCAGGCCGTATTTCACCCGTCTACAGG
TAACAAACAACGCCGATGCCGTCGTCGTCAGAGTCGCCTTGGATAGCCGG
GAGCCGTACCTCCTGGAGCGGCGCTCTGGATACCACGTCGTTCCATTGCA
ATACCCTCCAGCTAGAGTCCTCCTCTACATCGAAGTTTCCCATAGGGCCG
GTCTCCATCTCCCGGGTCTCCTGCCAGGTGTCGTTGTTTGCGCCCCGGTT
ACCAGGACCGTTGCTGTCGTCGGCAAGAGCAAGCGGCACTTCAACATCCG
CCGGGTGCAGTTGCCGCTCACTCCAGGCCGTATTTCACCCGTCTACAGAG
TGCAAAGCGAAACGTTGGAAAAGCTCCTCGCGGACCTCCGCCGGCCTATC
GATGGCGACCTTGACAGCGCTGCCGTCTACGTTGCCCTGTCTCGCGCAAG
ATCCCTCGATACCCTCTTCCTCAGTGCAAAGCGAAACGTTGGAAAAGCTC
CTCGCGGACCTCCGCCGGCCTATCGATGGCGACCTTGACAGCGCTGCCGT
CTACGTTGCCCTGTCTCGCGCAAGATCCCTCGATACCCTCTTCCTC
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