mRNA_S-dermatodea_contig10194.142.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10194.142.1
Unique NamemRNA_S-dermatodea_contig10194.142.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10194.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10194contigS-dermatodea_contig10194:1456..1953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size499
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.449974-CDS-S-dermatodea_contig10194:1455..18301622924144.449974-CDS-S-dermatodea_contig10194:1455..1830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10194 1456..1830 +
1694079047.9945388-CDS-S-dermatodea_contig10194:1455..18301694079047.9945388-CDS-S-dermatodea_contig10194:1455..1830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10194 1456..1830 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.465984-UTR-S-dermatodea_contig10194:1830..19531622924144.465984-UTR-S-dermatodea_contig10194:1830..1953Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10194 1831..1953 +
1694079048.0044215-UTR-S-dermatodea_contig10194:1830..19531694079048.0044215-UTR-S-dermatodea_contig10194:1830..1953Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10194 1831..1953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10194.142.1prot_S-dermatodea_contig10194.142.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10194 1456..1830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10194.142.1

>prot_S-dermatodea_contig10194.142.1 ID=prot_S-dermatodea_contig10194.142.1|Name=mRNA_S-dermatodea_contig10194.142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
PHTLIDEQLFLRRPRRLGSRAKEQKKRKLKNVLRPISLLSVANRRFQLTR
EPACERRRVPRARACCYLCLPGPRRGTHCTSFFFQATPPTSSILLVSSVF
RARSFVILQHNNFLLFWEKRSTGE*
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mRNA from alignment at S-dermatodea_contig10194:1456..1953+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10194.142.1 ID=mRNA_S-dermatodea_contig10194.142.1|Name=mRNA_S-dermatodea_contig10194.142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10194:1456..1953+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACACACATTGATTGATGAGCAGTTGTTTTTGCGCAGACCACGACGGCT
TGGGTCGCGCGCGAAGGAACAGAAGAAACGAAAACTGAAAAACGTTTTGC
GCCCCATCTCTCTGCTCTCGGTAGCAAACCGTCGCTTTCAACTCACCAGA
GAGCCAGCCTGTGAACGACGGAGAGTACCTCGGGCGCGGGCCTGCTGCTA
TCTGTGTTTGCCTGGGCCACGGCGCGGCACACACTGCACAAGCTTTTTCT
TTCAAGCGACACCACCCACATCATCGATTCTCCTCGTGTCGTCTGTCTTC
CGCGCACGTAGTTTTGTTATACTGCAACATAACAACTTTTTGTTGTTTTG
GGAGAAACGGTCGACAGGGGAGTGAAAGCCGACGTCTGAGAGTACAAGCC
CACATACTACTACTACTACAACACTCCTGCTGTGTATTGCTGCTGTATCG
ACTATCGACATCGACAAGCAAGATCGGCCAGAAGGCGCTCCACCCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10194:1456..1953+

>mRNA_S-dermatodea_contig10194.142.1 ID=mRNA_S-dermatodea_contig10194.142.1|Name=mRNA_S-dermatodea_contig10194.142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig10194:1456..1953+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACACACATTGATTGATGAGCAGTTGTTTTTGCGCAGACCACGACGGCT
TGGGTCGCGCGCGAAGGAACAGAAGAAACGAAAACTGAAAAACGTTTTGC
GCCCCATCTCTCTGCTCTCGGTAGCAAACCGTCGCTTTCAACTCACCAGA
GAGCCAGCCTGTGAACGACGGAGAGTACCTCGGGCGCGGGCCTGCTGCTA
TCTGTGTTTGCCTGGGCCACGGCGCGGCACACACTGCACAAGCTTTTTCT
TTCAAGCGACACCACCCACATCATCGATTCTCCTCGTGTCGTCTGTCTTC
CGCGCACGTAGTTTTGTTATACTGCAACATAACAACTTTTTGTTGTTTTG
GGAGAAACGGTCGACAGGGGAGTGACCACACACATTGATTGATGAGCAGT
TGTTTTTGCGCAGACCACGACGGCTTGGGTCGCGCGCGAAGGAACAGAAG
AAACGAAAACTGAAAAACGTTTTGCGCCCCATCTCTCTGCTCTCGGTAGC
AAACCGTCGCTTTCAACTCACCAGAGAGCCAGCCTGTGAACGACGGAGAG
TACCTCGGGCGCGGGCCTGCTGCTATCTGTGTTTGCCTGGGCCACGGCGC
GGCACACACTGCACAAGCTTTTTCTTTCAAGCGACACCACCCACATCATC
GATTCTCCTCGTGTCGTCTGTCTTCCGCGCACGTAGTTTTGTTATACTGC
AACATAACAACTTTTTGTTGTTTTGGGAGAAACGGTCGACAGGGGAGTGA
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