mRNA_S-dermatodea_contig10190.141.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10190.141.1
Unique NamemRNA_S-dermatodea_contig10190.141.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10190.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10190contigS-dermatodea_contig10190:6617..7415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size799
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10190.141.1prot_S-dermatodea_contig10190.141.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10190 6822..7409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.3924022-UTR-S-dermatodea_contig10190:6616..68211622924144.3924022-UTR-S-dermatodea_contig10190:6616..6821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10190 6617..6821 +
1694079047.9546304-UTR-S-dermatodea_contig10190:6616..68211694079047.9546304-UTR-S-dermatodea_contig10190:6616..6821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10190 6617..6821 +
1622924144.4149141-UTR-S-dermatodea_contig10190:7409..74151622924144.4149141-UTR-S-dermatodea_contig10190:7409..7415Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10190 7410..7415 +
1694079047.9820247-UTR-S-dermatodea_contig10190:7409..74151694079047.9820247-UTR-S-dermatodea_contig10190:7409..7415Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10190 7410..7415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.404633-CDS-S-dermatodea_contig10190:6821..74091622924144.404633-CDS-S-dermatodea_contig10190:6821..7409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10190 6822..7409 +
1694079047.963403-CDS-S-dermatodea_contig10190:6821..74091694079047.963403-CDS-S-dermatodea_contig10190:6821..7409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10190 6822..7409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10190.141.1

>prot_S-dermatodea_contig10190.141.1 ID=prot_S-dermatodea_contig10190.141.1|Name=mRNA_S-dermatodea_contig10190.141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=196bp
MIRELVGKPRQRTYIRGKGEEGDRGTTLEKGRHTADLSIELDLRHDSREP
TSGIDEQPPSEAIPCNRFRRLSPLYRYNAELANWTVFSNLMDTSCIPVSG
VATTLGSFSCDVLERIGYWIFCPHRKGKSWADTFLGRKALPGFHGRKVAL
HDVPVGTRVSYTPPPSVVFFRERFRFEPLTRAGSARSTWNFDGVT*
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mRNA from alignment at S-dermatodea_contig10190:6617..7415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10190.141.1 ID=mRNA_S-dermatodea_contig10190.141.1|Name=mRNA_S-dermatodea_contig10190.141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=799bp|location=Sequence derived from alignment at S-dermatodea_contig10190:6617..7415+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGACGTGCAGGGCGTGAATCGCTGCAGGGTGTGCCCTCTGATGGCGCTT
CATCTTACAAATGCCAGTGCTTCCTCTAACTGTAGGCAGCTTAATACCAC
GCTCTCCGCGAGAGGGGACGGGGCGGCAGTGTCGAAAGCGCGACAGACCC
GGGAGAAACTTCTCCAACACCAACCTTCAAGAACCAGGAAGAAGCCGCCA
GGCGTATGATAAGAGAGCTCGTTGGGAAGCCAAGACAGAGGACATATATT
AGAGGCAAAGGAGAAGAAGGCGATCGAGGAACAACGCTCGAGAAAGGCAG
ACATACTGCGGACCTAAGTATAGAGCTAGACTTAAGGCACGACTCGCGAG
AACCCACATCGGGGATAGACGAGCAACCTCCCTCGGAAGCGATCCCATGT
AACCGTTTTCGGCGCTTATCGCCTCTGTATCGCTACAACGCCGAATTGGC
GAATTGGACGGTTTTTTCCAATTTAATGGATACCTCTTGCATTCCCGTGT
CCGGAGTCGCCACAACGTTGGGGTCGTTTTCGTGTGATGTACTTGAACGC
ATAGGCTATTGGATTTTTTGCCCACATCGCAAGGGCAAATCGTGGGCAGA
CACGTTTTTGGGGCGGAAAGCCCTTCCTGGCTTCCATGGACGAAAGGTAG
CCCTACACGATGTTCCGGTCGGAACAAGGGTTTCTTACACGCCTCCACCG
TCCGTCGTCTTCTTTCGTGAACGTTTCAGATTCGAGCCTCTAACACGAGC
GGGGAGTGCTCGTTCAACATGGAATTTCGACGGGGTAACTTGAAGTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10190:6617..7415+

>mRNA_S-dermatodea_contig10190.141.1 ID=mRNA_S-dermatodea_contig10190.141.1|Name=mRNA_S-dermatodea_contig10190.141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig10190:6617..7415+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATAAGAGAGCTCGTTGGGAAGCCAAGACAGAGGACATATATTAGAGG
CAAAGGAGAAGAAGGCGATCGAGGAACAACGCTCGAGAAAGGCAGACATA
CTGCGGACCTAAGTATAGAGCTAGACTTAAGGCACGACTCGCGAGAACCC
ACATCGGGGATAGACGAGCAACCTCCCTCGGAAGCGATCCCATGTAACCG
TTTTCGGCGCTTATCGCCTCTGTATCGCTACAACGCCGAATTGGCGAATT
GGACGGTTTTTTCCAATTTAATGGATACCTCTTGCATTCCCGTGTCCGGA
GTCGCCACAACGTTGGGGTCGTTTTCGTGTGATGTACTTGAACGCATAGG
CTATTGGATTTTTTGCCCACATCGCAAGGGCAAATCGTGGGCAGACACGT
TTTTGGGGCGGAAAGCCCTTCCTGGCTTCCATGGACGAAAGGTAGCCCTA
CACGATGTTCCGGTCGGAACAAGGGTTTCTTACACGCCTCCACCGTCCGT
CGTCTTCTTTCGTGAACGTTTCAGATTCGAGCCTCTAACACGAGCGGGGA
GTGCTCGTTCAACATGGAATTTCGACGGGGTAACTTGAATGATAAGAGAG
CTCGTTGGGAAGCCAAGACAGAGGACATATATTAGAGGCAAAGGAGAAGA
AGGCGATCGAGGAACAACGCTCGAGAAAGGCAGACATACTGCGGACCTAA
GTATAGAGCTAGACTTAAGGCACGACTCGCGAGAACCCACATCGGGGATA
GACGAGCAACCTCCCTCGGAAGCGATCCCATGTAACCGTTTTCGGCGCTT
ATCGCCTCTGTATCGCTACAACGCCGAATTGGCGAATTGGACGGTTTTTT
CCAATTTAATGGATACCTCTTGCATTCCCGTGTCCGGAGTCGCCACAACG
TTGGGGTCGTTTTCGTGTGATGTACTTGAACGCATAGGCTATTGGATTTT
TTGCCCACATCGCAAGGGCAAATCGTGGGCAGACACGTTTTTGGGGCGGA
AAGCCCTTCCTGGCTTCCATGGACGAAAGGTAGCCCTACACGATGTTCCG
GTCGGAACAAGGGTTTCTTACACGCCTCCACCGTCCGTCGTCTTCTTTCG
TGAACGTTTCAGATTCGAGCCTCTAACACGAGCGGGGAGTGCTCGTTCAA
CATGGAATTTCGACGGGGTAACTTGA
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