mRNA_S-dermatodea_contig10188.139.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10188.139.1
Unique NamemRNA_S-dermatodea_contig10188.139.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: D8LH70_ECTSI (tRNA (guanine(26)-N(2))-dimethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH70_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 3.380e-109
Identity = 162/202 (80.20%), Postives = 186/202 (92.08%), Query Frame = -3 
Query: 1838 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRKTSTPGQAILTREPKLEADFTVPSGLWQKKSATRYQQNPEPYWGPKARATGNKREASQGGGATADAPVEKKKKLE 2443
            GKRFK+GGPIWSP +H+ EWV LLLDRVQ+NRGPY P+T+KRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRM+D+QAAL+NAG+RVSQQHKEPQAVKTDAPDDV+WDVMRCWVKKHPVSDKRKTS+PGQAIL+++P  +ADFTVPSGLWQ+K+ATRYQQNPEPYWGPK+RATGNKR A +  G +  AP +K+ + E
Sbjct:  357 GKRFKVGGPIWSPAIHNMEWVRLLLDRVQKNRGPYQPSTKKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMIDMQAALVNAGFRVSQQHKEPQAVKTDAPDDVVWDVMRCWVKKHPVSDKRKTSSPGQAILSKDPNHQADFTVPSGLWQRKTATRYQQNPEPYWGPKSRATGNKRGAEESCGPSEGAPEDKRNRKE 558
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 3.590e-101
Identity = 216/235 (91.91%), Postives = 219/235 (93.19%), Query Frame = 2 
Query:  119 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRQPGQNSEKELRKRDVRTEVEDSERRALEEKPAVIGRRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKXXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSGSS-QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 820
            MTTAHRPTWA AQAAASDVGNWSTGGQASQAVS+ DLPSQTTLKFR+ GQNSE ELRKRDVR EVEDSERRAL+EKPA I RRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDD  XXXXXXXXXXXXXXXXXXXXXX LEKELEKIRK   XXXXXXXXXXXXXXX RKQEAAMTGNILLTQS SS QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK
Sbjct:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: A0A836C8Z8_9STRA (tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z8_9STRA)

HSP 1 Score: 224 bits (571), Expect = 8.490e-61
Identity = 109/192 (56.77%), Postives = 141/192 (73.44%), Query Frame = -3 
Query: 1877 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKR-KTSTPGQAILTREPKLEADFTVPSGLWQKKSATRYQQNPEPYWGPKARATGNKR--EASQGGGA 2443
            G   K+GGP+W+ P+HD +WV  LL R+++ +G  PPAT  RI  MLT+VSEEL DVPL Y+L D+CS LHC +P +   +AA+INAGYR+S QHK+P A+KTDAPDDV+WD+MRCWVK HPVS KR K  T    IL++EPK EADF+   G   ++  +R+ QNPEP+WGPK+RATG ++  EA  GG A
Sbjct:  277 GGHMKLGGPLWTAPIHDEQWVLALLARIERYKGGTPPATAPRIKSMLTTVSEELFDVPLHYNLADICSHLHCTAPPLPTFRAAVINAGYRISAQHKDPGAIKTDAPDDVIWDIMRCWVKTHPVSAKRLKPDTAAFKILSKEPKHEADFSPVQGSMLRR-VSRFHQNPEPFWGPKSRATGKRKADEAPAGGEA 467
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: A0A7S2WNN4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNN4_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.610e-58
Identity = 102/213 (47.89%), Postives = 141/213 (66.20%), Query Frame = -3 
Query: 1823 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGP--YPPA-TRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRKT-STPGQAILTREPKLEADFTVPSGLWQKKSATRYQQNPEPYWGPKARATGNKREASQG--GGATADAPVEKKKKLEATSDN 2443
            G R K+GGP+W  P+HD  WV   L  V  + G    PP  T+ R+HG+LT+VSEELPD PL+Y++P +C T+HC SP+  D ++AL+NAGYRVS  HK P A+KTDAPD+V+WD++RCWVK+HP++ KR +  + G  IL++EP L+ADF+ P     K  A R+  NPE  WGPK+RA   KR    G  G  +    ++ + ++ ATS N
Sbjct:  132 GARLKLGGPMWGDPIHDMSWVQAALRDVTASAGADASPPIQTKTRLHGLLTAVSEELPDAPLYYTMPSLCETIHCASPKWDDYRSALVNAGYRVSGCHKVPDAIKTDAPDEVVWDILRCWVKRHPINSKRNSPKSHGHTILSKEPVLQADFSRPKSFKPKPKAARFPPNPEEQWGPKSRARPKKRPVEDGTPGSQSKKPAIDAESEIAATSTN 344
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: W7T9F0_9STRA (tRNA (guanine(26)-N(2))-dimethyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9F0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.250e-57
Identity = 109/197 (55.33%), Postives = 136/197 (69.04%), Query Frame = -3 
Query: 1883 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNR--------GPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDK-RKTSTPGQAILTREPKLEADFTVPSGLWQ-KKSATRYQQNPEPYWGPKARATGNKREASQGG 2443
            G  F++GGPIWS PMHD EWV   L R ++          G  P  T +R+ G+LT+VSEEL DVPL Y+L DM  TLHC  PR+ DV+AALINAGYRVS QHKEP+A KTDAP  VMWD+MRCWV+KHPV  + +K S+P   IL + PKL+A+F+ P  L   KK  +RY  NPE +WGPK++A G KR+  +GG
Sbjct:  381 GAAFRLGGPIWSAPMHDMEWVLEALGRAEEQADADAEAKTGLAPLPTTERMVGLLTAVSEELVDVPLHYTLQDMAGTLHCTCPRVDDVKAALINAGYRVSSQHKEPRAFKTDAPPAVMWDIMRCWVQKHPVGPRGQKESSPAAKILAKAPKLQANFSWPPELLAPKKKVSRYPPNPEAFWGPKSKAKGRKRKMEEGG 577
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: A0A2D4BF23_PYTIN (tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF23_PYTIN)

HSP 1 Score: 212 bits (540), Expect = 1.780e-56
Identity = 105/202 (51.98%), Postives = 138/202 (68.32%), Query Frame = -3 
Query: 1844 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRK-TSTPGQAILTREPKLEADFTVPS-GLWQKKSATRYQQNPEPYWGPKARATGNKREASQGGGATADAPVEKKKK 2443
            G +FK+ GP WS P+HD + V  + DRV      +P  T++R+HGMLT++SEEL D PL Y+LP +C TLHC++PRM  +Q AL +AGY  SQ HK P A+KT+AP+ VMWD+MRCWVKKHP++ KR+   TPG  IL +EP+LEA+F+       +K  A R+  NPEP WGPK RA GNK  A+    +TA+ P  KK K
Sbjct:  321 GGKFKMAGPFWSAPIHDRDVVLRVRDRVASTTTEFP--TKERLHGMLTTISEELVDAPLHYTLPGLCKTLHCSNPRMDQLQGALRHAGYEASQFHKVPDAIKTNAPNHVMWDIMRCWVKKHPLNKKREGQETPGSRILAKEPELEANFSSKRPASHEKPKALRFPMNPEPNWGPKPRAVGNKGTAAAAAESTAEEPEAKKAK 520
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: F0Y1C9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1C9_AURAN)

HSP 1 Score: 209 bits (531), Expect = 2.450e-56
Identity = 105/179 (58.66%), Postives = 127/179 (70.95%), Query Frame = -3 
Query: 1916 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRKTSTPGQA--ILTREPKLEADFTVPSGLWQKKS-ATRYQQNPEPYWGPKARA 2443
            G  FKIGGPIWS P+HD EWV   LDRV      +  +T +RIHGMLT+VSEEL DVPL+Y+LPD+CS LHC SP+M +V+AAL +AGYRVSQ H+EP A+KTDAP  V+WDV RCWVKKHPVS+KR       A  IL   P LEA+F   + +  K + A R+  NPE +WGPKA A
Sbjct:  237 GAPFKIGGPIWSAPLHDPEWVLAGLDRVAAGVDAHL-STTERIHGMLTAVSEELLDVPLYYTLPDLCSALHCASPKMAEVRAALTHAGYRVSQHHREPDAIKTDAPPRVLWDVFRCWVKKHPVSEKRLAEPRSAAAKILATAPVLEANFATTAAMRAKATKARRWAPNPEEHWGPKAAA 414
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: K3WLD8_GLOUD (tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLD8_GLOUD)

HSP 1 Score: 212 bits (539), Expect = 3.240e-56
Identity = 101/194 (52.06%), Postives = 139/194 (71.65%), Query Frame = -3 
Query: 1862 RFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRK-TSTPGQAILTREPKLEADFTVPSGLWQKKSATRYQQNPEPYWGPKARATGNKREA-SQGGGATADAP 2437
            +FK+ GPIWS P+HD + V  + +RV +    +P  T++R+HG+LT++SEEL D PL Y+LP +  TLHC++PRM  +Q A+  AGY+ SQ HK P+A+KT+AP+DV+WD+MRCWVKKHPV+ KR+  +TPG  IL +EPK EA+F+      +K+ A R+  NPEP WGPKARA GNK  A +Q G A  + P
Sbjct:  339 KFKMAGPIWSAPIHDRDVVLRIRERVAKTTTEFP--TKERLHGLLTTISEELVDAPLHYTLPGLSKTLHCSNPRMEQIQGAIRAAGYQASQFHKVPEAIKTNAPNDVIWDIMRCWVKKHPVTKKREGENTPGMRILAKEPKFEANFSSRRPAHEKEKALRFPHNPEPNWGPKARAVGNKAAAPAQNGSAQGEQP 530
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: A0A8J5INZ5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5INZ5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 8.240e-55
Identity = 103/205 (50.24%), Postives = 138/205 (67.32%), Query Frame = -3 
Query: 1838 RFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRK-TSTPGQAILTREPKLEADFTVPS-GLWQKKSATRYQQNPEPYWGPKARATGNKREASQGGGATADA---PVEKKKKLE 2437
            ++K+ GPIWS P+H  + V  + DRV+++   +P  T+ R+HG+LT++SEEL D PL Y+LP MC  LHC++PRM  +Q A+ +AGY VSQ HK P AVKT AP+DV+WD+MRCWVKKHP++ KR    TPG  IL +EPK EA+F+    G   K  A R+  NPEP WGPKARA GN+ + +     + D    P  KK K+E
Sbjct:  237 KYKMAGPIWSAPLHSRDVVLKIRDRVEKSTSEFP--TKPRLHGLLTTISEELVDAPLHYTLPGMCKVLHCSNPRMSQIQGAIRHAGYEVSQFHKVPDAVKTTAPNDVIWDIMRCWVKKHPLNKKRDGEDTPGSRILAKEPKFEANFSSKRPGPNDKPKALRFPLNPEPNWGPKARAVGNRADDATPAAKSEDKVEEPDAKKAKME 439
[Close]
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Match: A0A7S3ZTX3_9STRA (tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTX3_9STRA)

HSP 1 Score: 209 bits (532), Expect = 9.970e-55
Identity = 102/184 (55.43%), Postives = 133/184 (72.28%), Query Frame = -3 
Query: 1901 GKRFKIGGPIWSPPMHDTEWVSLLLDRVQQNRGPYPPATRKRIHGMLTSVSEELPDVPLFYSLPDMCSTLHCNSPRMVDVQAALINAGYRVSQQHKEPQAVKTDAPDDVMWDVMRCWVKKHPVSDKRKTSTPGQA--ILTREPKLEADFTVPSGLWQKKS-ATRYQQNPEPYWGPKARATGNKR 2443
            G  FKIGGPIWS P+HD EWV+  LDRV      +  +T +RIHG+ T+VSEEL DVPL+Y++PD+C TLHC +P++ +V+AAL +AGYR SQ H++P A+KTDAP  V+WDV RCWVKKHP++ KR       A  IL+ EP LEA+F+  + L QK++ A R+  NPE YWGPKA A G K+
Sbjct:  412 GAAFKIGGPIWSAPIHDAEWVAAALDRVAAECDEHL-STTERIHGVFTAVSEELMDVPLYYTIPDICKTLHCAAPKLCEVRAALQHAGYRSSQSHRDPDAIKTDAPPRVLWDVFRCWVKKHPIAAKRLEDKDSAAAKILSVEPILEANFSTTAALRQKQTKARRWAPNPEEYWGPKAAARGKKK 594
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10188.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH70_ECTSI3.380e-10980.20tRNA (guanine(26)-N(2))-dimethyltransferase n=2 Ta... [more]
D8LH69_ECTSI3.590e-10191.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8Z8_9STRA8.490e-6156.77tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Ta... [more]
A0A7S2WNN4_9STRA1.610e-5847.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7T9F0_9STRA2.250e-5755.33tRNA (guanine(26)-N(2))-dimethyltransferase n=2 Ta... [more]
A0A2D4BF23_PYTIN1.780e-5651.98tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Ta... [more]
F0Y1C9_AURAN2.450e-5658.66Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K3WLD8_GLOUD3.240e-5652.06tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Ta... [more]
A0A8J5INZ5_9STRA8.240e-5550.24Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A7S3ZTX3_9STRA9.970e-5555.43tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10188contigS-dermatodea_contig10188:1543..6709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue1.6e-86
Seed eggNOG ortholog2880.D8LH69
Preferred nameCWC15
KEGG koko:K09191,ko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3228@1,KOG3228@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03021,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPre-mRNA-splicing factor Cwf15/Cwc15
Ec32 orthologEc-24_000770.1
Exons6
Model size2445
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10188.139.1prot_S-dermatodea_contig10188.139.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10188 3165..6591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.1680841-UTR-S-dermatodea_contig10188:1542..31641622924144.1680841-UTR-S-dermatodea_contig10188:1542..3164Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10188 1543..3164 -
1694079047.8112888-UTR-S-dermatodea_contig10188:1542..31641694079047.8112888-UTR-S-dermatodea_contig10188:1542..3164Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10188 1543..3164 -
1622924144.254764-UTR-S-dermatodea_contig10188:6591..67091622924144.254764-UTR-S-dermatodea_contig10188:6591..6709Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10188 6592..6709 -
1694079047.8821921-UTR-S-dermatodea_contig10188:6591..67091694079047.8821921-UTR-S-dermatodea_contig10188:6591..6709Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10188 6592..6709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.1868308-CDS-S-dermatodea_contig10188:3164..32881622924144.1868308-CDS-S-dermatodea_contig10188:3164..3288Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 3165..3288 -
1694079047.8205593-CDS-S-dermatodea_contig10188:3164..32881694079047.8205593-CDS-S-dermatodea_contig10188:3164..3288Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 3165..3288 -
1622924144.1992626-CDS-S-dermatodea_contig10188:3502..35641622924144.1992626-CDS-S-dermatodea_contig10188:3502..3564Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 3503..3564 -
1694079047.828114-CDS-S-dermatodea_contig10188:3502..35641694079047.828114-CDS-S-dermatodea_contig10188:3502..3564Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 3503..3564 -
1622924144.211371-CDS-S-dermatodea_contig10188:3748..37871622924144.211371-CDS-S-dermatodea_contig10188:3748..3787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 3749..3787 -
1694079047.8353622-CDS-S-dermatodea_contig10188:3748..37871694079047.8353622-CDS-S-dermatodea_contig10188:3748..3787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 3749..3787 -
1622924144.2237108-CDS-S-dermatodea_contig10188:4475..47021622924144.2237108-CDS-S-dermatodea_contig10188:4475..4702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 4476..4702 -
1694079047.8526688-CDS-S-dermatodea_contig10188:4475..47021694079047.8526688-CDS-S-dermatodea_contig10188:4475..4702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 4476..4702 -
1622924144.234661-CDS-S-dermatodea_contig10188:6116..62931622924144.234661-CDS-S-dermatodea_contig10188:6116..6293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 6117..6293 -
1694079047.864929-CDS-S-dermatodea_contig10188:6116..62931694079047.864929-CDS-S-dermatodea_contig10188:6116..6293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 6117..6293 -
1622924144.245991-CDS-S-dermatodea_contig10188:6515..65911622924144.245991-CDS-S-dermatodea_contig10188:6515..6591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 6516..6591 -
1694079047.8735473-CDS-S-dermatodea_contig10188:6515..65911694079047.8735473-CDS-S-dermatodea_contig10188:6515..6591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10188 6516..6591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10188.139.1

>prot_S-dermatodea_contig10188.139.1 ID=prot_S-dermatodea_contig10188.139.1|Name=mRNA_S-dermatodea_contig10188.139.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRQPGQ
NSEKELRKRDVRTEVEDSERRALEEKPAVIGRRYDEGGAGRGRDRLQLLL
KEQGDVNLDDVKKYDDADDADSGDDLDSSDSDDDSDDDEEALEKELEKIR
KEREEARKKKEREEAEDEEKRKQEAAMTGNILLTQSGSSQVKRRWNDDVV
FKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK*
back to top

mRNA from alignment at S-dermatodea_contig10188:1543..6709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10188.139.1 ID=mRNA_S-dermatodea_contig10188.139.1|Name=mRNA_S-dermatodea_contig10188.139.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5167bp|location=Sequence derived from alignment at S-dermatodea_contig10188:1543..6709- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCGACACACCTTGACCTCCTTGCCATCCCCCTCCTGTCTCTGTCTCTG
TCTGCCCGCTGCGTGTCTACCGTACTGCGTCGCCCGAGCTTGGTCCCAGA
CGCTAGTAGGCTGCAAATATGACTACGGCTCATAGACCGACATGGGCTGC
TGCTCAGGCGGCTGCATCTGATGTCGGCAATTGGTCCACCGGAGGTGAGA
AACGCAATGACAAACTTTGAAGGTCGCAGCTCTCACAATGGGCGCGTGCG
GAGTGCGGATTGATAAACTTGTCGCAGTGCAATAGTGTTTTCGTACATAG
GATATGGCTGCAGCGCGCCAGATACAGACCACCTGCCCCAGCACGTGCTT
TCGTCGTTCATTCTGGAATCTACGGGCTCAGGCGTGCACTACTTTCGTTT
ATCGCATTCCTCTCAGGTCAAGCGAGCCAGGCGGTCTCTTCGTGGGATTT
GCCGAGCCAAACTACCCTGAAGTTCAGGCAGCCAGGCCAGAACAGCGAGA
AGGAGCTTCGAAAGCGGGATGTCCGCACAGAGGTTGAAGACAGCGAGCGT
CGTGCATTGGAGGAAAAACCGGCAGTTATCGGCCGGCGTTATGGTGAGGA
TGCGTGTAACAACGCACAGCAGCAACATGTCGTCCTTGAAACATGGCCAT
ATCAGACCCACGTATCCGCACTCCATCGTAGGCAAATGTGGATAGATCGG
TGTGCCACAAGGCCAGTTCGTTTCAATCTCTTGTCCACCGCCTATTTTCA
GAGCAACCGCAGTGCCCTCGCCGCAATTTCGGTGCAGAAGGTCATGAGAG
GTGGCCTTGAGGGCATTGTCTGTTGTGGACAAAACAAAACATACTTTCGG
CCTGAAAAATTGTAATCAGGGCGGTTGCGTTGGTCATTGTGGTACGTAAA
GTAATTTTCCAAGTGAATAATTTTTCGATGCAGTAGACGCCTCTTGAGGA
ATTGTGGAACCCCGTGTATTATGACATATATGGTCATAACCCTTCCGACA
TAGTTTATCGCGCAGCAGCTGGCATTAGGCAGGGCAGCTAACCACCCATC
CGGGGACAGCTTCCCACGCATCACGATGGCATCCCCTGAAATCATCGACA
TGGTCGGTCCTGGTGTTGGTACCGATATGGGTGCTGTGTTGGCGGCGGGG
TCGCGCAAACCACCCCCCGTCGATGAACCCCAAGAAGAGAATGGCTGTGT
ACTGTGTCTGCAGAGTCTCCGAACTTGCTGATTTCCAATTGATCAAACAC
AACTGGTGCGCGGTTGCTACTCATGCTGCTGCGCTGGTGCTGCTGGTGCT
GTGCTGTGCTGCGCCGTATGCCGGTTGTCGGATGTCAAGTGGTTTTCAGG
GCCCCTGGGAAGGCGTTTCCTAGTAGGGGATGGGATCCAAACGTCCCCCC
CCGGGGATGGTAGGATATCATCCCCTTCTCCTGAATCGAATGGAATGAAT
AGTGAATTTCCGAAAAACGTACTATTCAGTATTGAATCGTACTTTCTGAA
CTGAATACCGCATCCCTGGTGCATGGACATTAGAGCGAAACCGTCAACTA
TTCCTATTCATATTCCCTCTGGTGGGCGGCAGGTCAATGTCCCTCGACTA
ATCCGCAGTGGAGTGCTTCCGTAACGTTGCACACCGCCCGGCGTTCTATA
ACAAGTATTTCGCAACCACGGCACCGATGACGTAGAGGATAGTGCAGCGG
AAGCACGCTGTTACGGAGTTGTCGAGCGGTTTTGAAGTGTGTGCGCCATT
CTGATACGATGAGCTACATGGGCTCTCTTTGAAGGCACAGGATGCAGTAT
CGGCACCGTACCACTGCAACCGCGAGGATGTTCAAATGCATATTATCCAC
TGCTGTCTTCAACACCCGACAACCTTAACCTTTGCGCGGCCAACGGGTGT
TGAAACCCTCTTGAAGCTTTCAGGCTGGGTTCTCGGAGGGAGGGCTAGAA
GTTTAAGCAGGTCCGTCCTCCGCCACCGCCCGCTGATCGACCGTTTTATC
ATCGCAGACGAAGGTGGGGCTGGTCGAGGGCGGGATCGCTTGCAGCTGCT
GTTGAAAGAACAGGGCGACGTTAATCTGGATGACGTGAAAAAGTACGACG
ATGCTGACGATGCTGACAGTGGCGACGATCTGGATAGTAGCGACTCCGAC
GATGACTCGGATGATGATGAGGAGGCGCTAGAAAAAGAACTGGAAAAAAT
CAGGAAAGAGCGTGAGGAAGCTCGGAAAAAGAAGGTACCCCCCCGGTTTT
TTTTTTTTTGTCTCGCGAGCAAGCGGTCGCTGAGGAGAATGGCCTCGCTA
GCCACGCGTACTCTGTCCACTCGAAGAACCCGTCGTGGTTATACTGTACC
GAAAAATCAATTTAGGTCGCGTGAAATCTTGCGAAGCACCCACCTTGAAC
GCAAACGAGAGCTGTGGCATAGCGAGTATGTCCTCCCGTTGAGAAGCTGC
GCACACACTGAGTTCCGTGGTCACCTGAGGCATCACCGCTCACAATAATA
CTGCAGTTGTAGCGAAGGTTGGGACACACGAATTTGTTCATTTGTTCGGG
TTCCTGCGCGTAGTTTCTGGCACCGTGGTGGATTCGGCACACCTTACACC
ATTGTACGTCCCACACACATTTTGTCATGTGGTTCGCGGAGATGCACCGC
GAGCGAAAATTCCACCTGCTCTACCGCTGACCGCTGACGAACGCTCTGCG
GCTCACCCGAGACTTCGCATGTAGCCGGGGGTGCCGCGAGTTGAACCCGC
GGGCCACGTTAGAGCGAGCATGGTTGTGCCGTACGCGCCCAACTCTTTGT
TCGCTCGCATACACGCGCGCCGAACCTACTCATAACCCGGAACATACTTC
AACACACCATTGAGACTTGGCTCGTCTTCTTCTCCACCCTCTCGTGCCTT
CCGCTTGCATTCGTAATCGCAGGAACGTGAGGAAGCTGAAGATGAGGAGA
AGCGCAAGCAGGTAAATTTTAGGAACGTATGAAAACTGATTAACCACAAT
TGCTACGTACACTTGCACCAGATACCATCATGCCAGTTTTGCCCTGTGTG
TAAAAACGTGAAAGGTTTTCCGTGAACGCGCAAGGAAAGAGAGGCATATG
TCGGATGGTGCTCCAGCTGACCATGTTTTGTCTCGTGATTGACAGGAAGC
GGCCATGACGGGGAATATTTTGCTCACGCAGAGCGGCAGTTCTCAAGTCA
AGAGAAGGTGAGCGTGGGCGATTTTCCGACGCATTATGCCGCCTCGAGCA
ACATGGGAAGCGTGCGACTGGCCCGGCTCATGTCATATGTAATATATTCT
CCATGCAAAACAGCTCTAGTCCCAGTTTTTTTCCGTCGGGCGACACCGAA
GTGTGAAGTTTTCCGTACACTGCCAACTTGCCTCTACGAAATATGCTTCA
CCCTTGCTGCCGCACCGCCAGGTGGAACGACGATGTTGTTTTCAAAGGGC
AAGCGAGGACAGAGCCGGAGACGAAGAAAAGATTTGTGAACGACACCATT
CGCAACGACTTCCACCGTCGGTTCCTGACCAAGTACATCAAGTAAAGACT
TGCCTTTGGTAGCTGCTTCTGGCCTGTATCCTCGGGGGACGATGATGCCC
TGAGAGAACCACAGCACACACGCTTGATTGTATATGTATGACCAAGCGAA
GTAGACGGGTAGCGTGTTGTCGTTACAAAAGGAGCGGGGTCACGTTGGAG
CCGACGAGCGAGATCTTCTCTCAACACTGTATAATCCTCGGCAGCAGACG
TGCGGGTCTCTCTAAAAGATTTTCGAGCTCACGTCTGGTCAGAGTCGTGG
CTTATGTGACCAAAACACTTTTTTTTGTACATTGCAGTACTGTTACAGTT
GTATGATAATGCGCCGCTCGATACTGTAGCGTGATTGGTTGCATATTGGT
GCGACTTGTGTCCAACAACGTGCTTCGCAAGTACCCAAGGTTAAGGTTGA
GCTGGATGTCTTGCGCCACTTCCGTCTTGGCCAGGCGTGCTTGTTATCTA
TTAAAATATTAAATCGTCAGCGTTACACGAGCTACGACGAGTGGTATGTT
CAATTGAGCGAGTCGCAATGTGTTGAACGTTCGATGGCGAGCGTCTCAAC
GAGTATCATACCCAAAAACGAAAAGGCGTAAAAGTACAATCGGCGCCAAA
CGGCGTTCATCTGCTATGGTAACTAGTTCCACACGCACCAGGCCCCAAAC
ATGACAATACCAATAATAGTTGGTGGCGCCTCCCTTTGTCTGTGCGAAAA
GGAACACATCACACATGATGAGCATACATCATCGACATTATTATCGTTGC
CTGCGTGAACAAAATTGAGCACGGCAGCCGGTCCCGTAGCGCAGTGCGCA
GGCAACGTGATGACCTCACGACTGTCTTCATTCGCGAGTAAACTCGTGCC
AAAAGAGCACGATATAAGCACAAGAATATATCATCACATATAAAATTGTG
TCCGTGACTGCTGCTAGCTACAAATATCGCCGCCCTTGCCCTCTCGTTCC
TTGGTATCCGAAGTGGCCTCCTGGTTATCCGAAGTGGCCTCCTGGTTATC
CGAAGTGGCCTCTAGCTTCTTCTTCTTTTCTACTGGCGCGTCCGCTGTAG
CTCCCCCTCCCTGTGAAGCCTCTCTTTTGTTGCCTGTGGCCCGTGCCTTC
GGCCCCCAGTAGGGTTCAGGGTTCTGCTGGTACCTTGTGGCCGATTTCTT
CTGCCACAGACCAGAAGGAACGGTAAAGTCGGCTTCCAGCTTGGGTTCTC
GCGTCAGTATTGCCTGGCCTGGAGTGCTAGTCTTGCGCTTGTCGCTCACT
GGGTGTTTCTTCACCCAGCAGCGCATTACATCCCACATGACGTCGTCTGG
TGCGTCCGTCTTAACTGCCTGGGGCTCCTTGTGCTGTTGAGACACCCTGT
AGCCCGCATTGATCAGAGCAGCCTGAACGTCCACCATCCGCGGACTGTTG
CAGTGAAGCGTGGAGCACATGTCGGGAAGCGAATAGAAAAGTGGTACATC
CGGCAATTCCTCAGAGACAGAGGTGAGCATTCCGTGGATTCGCTTCCTTG
TGGCCGGCGGGTAGGGCCCGCGATTTTGCTGAACGCGGTCCAGGAGCAAT
GACACCCACTCCGTGTCGTGCATGGGAGGGCTCCAGATTGGCCCCCCAAT
TTTGAAGCGCTTTCCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10188:1543..6709-

>mRNA_S-dermatodea_contig10188.139.1 ID=mRNA_S-dermatodea_contig10188.139.1|Name=mRNA_S-dermatodea_contig10188.139.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at S-dermatodea_contig10188:1543..6709- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACTACGGCTCATAGACCGACATGGGCTGCTGCTCAGGCGGCTGCATC
TGATGTCGGCAATTGGTCCACCGGAGATGACTACGGCTCATAGACCGACA
TGGGCTGCTGCTCAGGCGGCTGCATCTGATGTCGGCAATTGGTCCACCGG
AGGTCAAGCGAGCCAGGCGGTCTCTTCGTGGGATTTGCCGAGCCAAACTA
CCCTGAAGTTCAGGCAGCCAGGCCAGAACAGCGAGAAGGAGCTTCGAAAG
CGGGATGTCCGCACAGAGGTTGAAGACAGCGAGCGTCGTGCATTGGAGGA
AAAACCGGCAGTTATCGGCCGGCGTTATGGTCAAGCGAGCCAGGCGGTCT
CTTCGTGGGATTTGCCGAGCCAAACTACCCTGAAGTTCAGGCAGCCAGGC
CAGAACAGCGAGAAGGAGCTTCGAAAGCGGGATGTCCGCACAGAGGTTGA
AGACAGCGAGCGTCGTGCATTGGAGGAAAAACCGGCAGTTATCGGCCGGC
GTTATGACGAAGGTGGGGCTGGTCGAGGGCGGGATCGCTTGCAGCTGCTG
TTGAAAGAACAGGGCGACGTTAATCTGGATGACGTGAAAAAGTACGACGA
TGCTGACGATGCTGACAGTGGCGACGATCTGGATAGTAGCGACTCCGACG
ATGACTCGGATGATGATGAGGAGGCGCTAGAAAAAGAACTGGAAAAAATC
AGGAAAGAGCGTGAGGAAGCTCGGAAAAAGAAGACGAAGGTGGGGCTGGT
CGAGGGCGGGATCGCTTGCAGCTGCTGTTGAAAGAACAGGGCGACGTTAA
TCTGGATGACGTGAAAAAGTACGACGATGCTGACGATGCTGACAGTGGCG
ACGATCTGGATAGTAGCGACTCCGACGATGACTCGGATGATGATGAGGAG
GCGCTAGAAAAAGAACTGGAAAAAATCAGGAAAGAGCGTGAGGAAGCTCG
GAAAAAGAAGGAACGTGAGGAAGCTGAAGATGAGGAGAAGCGCAAGCAGG
AACGTGAGGAAGCTGAAGATGAGGAGAAGCGCAAGCAGGAAGCGGCCATG
ACGGGGAATATTTTGCTCACGCAGAGCGGCAGTTCTCAAGTCAAGAGAAG
GAAGCGGCCATGACGGGGAATATTTTGCTCACGCAGAGCGGCAGTTCTCA
AGTCAAGAGAAGGTGGAACGACGATGTTGTTTTCAAAGGGCAAGCGAGGA
CAGAGCCGGAGACGAAGAAAAGATTTGTGAACGACACCATTCGCAACGAC
TTCCACCGTCGGTTCCTGACCAAGTACATCAAGTAAGTGGAACGACGATG
TTGTTTTCAAAGGGCAAGCGAGGACAGAGCCGGAGACGAAGAAAAGATTT
GTGAACGACACCATTCGCAACGACTTCCACCGTCGGTTCCTGACCAAGTA
CATCAAGTAA
back to top