mRNA_S-dermatodea_contig10183.136.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10183.136.1
Unique NamemRNA_S-dermatodea_contig10183.136.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10183.136.1 vs. uniprot
Match: A0A6H5KKE1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.890e-9
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   85 DSDRGAPMRGVDSRGGXXXXXXXXXXXSAGRGRGMVLPAWMTSQRLTPQTPQVGGPP 255
            DSDRG PMRGVDSRGG           + GRGRGMVLPAW+ +Q+      Q+GGPP
Sbjct:  323 DSDRGPPMRGVDSRGGGFSGDSRNPPPTGGRGRGMVLPAWLVAQKNA----QMGGPP 375
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10183.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKE1_9PHAE5.890e-956.14WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10183contigS-dermatodea_contig10183:6703..7708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004400.1
Exons2
Model size318
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10183.136.1prot_S-dermatodea_contig10183.136.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10183 6748..7708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.9620275-UTR-S-dermatodea_contig10183:6702..67471622924143.9620275-UTR-S-dermatodea_contig10183:6702..6747Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10183 6703..6747 +
1694079047.7155104-UTR-S-dermatodea_contig10183:6702..67471694079047.7155104-UTR-S-dermatodea_contig10183:6702..6747Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10183 6703..6747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.971361-CDS-S-dermatodea_contig10183:6747..69541622924143.971361-CDS-S-dermatodea_contig10183:6747..6954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 6748..6954 +
1694079047.726276-CDS-S-dermatodea_contig10183:6747..69541694079047.726276-CDS-S-dermatodea_contig10183:6747..6954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 6748..6954 +
1622924143.9817452-CDS-S-dermatodea_contig10183:7642..77081622924143.9817452-CDS-S-dermatodea_contig10183:7642..7708Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 7643..7708 +
1694079047.7365172-CDS-S-dermatodea_contig10183:7642..77081694079047.7365172-CDS-S-dermatodea_contig10183:7642..7708Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 7643..7708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10183.136.1

>prot_S-dermatodea_contig10183.136.1 ID=prot_S-dermatodea_contig10183.136.1|Name=mRNA_S-dermatodea_contig10183.136.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MKPNIVGVGSPSSDSDRGAPMRGVDSRGGGGGGDSGNPPPSAGRGRGMVL
PAWMTSQRLTPQTPQVGGPPPAGAPPSQPPPQAPTSAYGAP
back to top

mRNA from alignment at S-dermatodea_contig10183:6703..7708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10183.136.1 ID=mRNA_S-dermatodea_contig10183.136.1|Name=mRNA_S-dermatodea_contig10183.136.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1006bp|location=Sequence derived from alignment at S-dermatodea_contig10183:6703..7708+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGTTCCACAAAATGCGTCTGTTTGCACCCCCTCTGATGGTGGATGAA
ACCGAATATTGTGGGTGTTGGGTCTCCAAGCAGTGACAGCGACAGGGGGG
CTCCCATGCGCGGGGTAGACAGCAGAGGTGGGGGAGGCGGTGGTGACAGC
GGCAATCCTCCCCCCTCGGCGGGTCGAGGGAGGGGGATGGTTCTTCCGGC
GTGGATGACAAGCCAGCGACTGACGCCACAGACGCCACAAGTTGGTGGCC
CGGTAAGCTTCTTCCGAACAGCGGCAGCACTCGCGATGCGCTGGATACAT
ACTACTGTTGCCGCATCAAGATATGAGAACTAAGTGTCCGTGTGAGGCGA
CGAGGTAAGGTCTTCACTTCGAACGGGAAACATCCCAGGTTTTTTGGGAC
GGTTTTTATTTTTGCTCCGTCTTTTTTTTTTTTTTATGCACCCGCTAAAA
CCCGCGTTCGCATTCATTTACCCTTAGTAGAGAAAATCACACTGTTTGAG
GACTACTTGAAATAGTTTTGATCACATCTGCCCGGAGGCTGGCTGTGCTG
GAAGTCGTGGGGAGGTAAACCCGCCTGTGATATGATATTGTGACCCTACG
AGGGGTCGCGTTTTGCGGCAGGCGCTTGCGGAACGAGGTCCCCACAGTGC
AGTGGAATCGAAAGGGAAACCTACGAGCTCCCCGCCATGTGGTCGCCTTC
GGGACCATCGGTCACCGACCGCACGAGGGCCGAAATTAAACAAAACTGGA
AGACGACGGACGGTGCCCTTGGAACAAAACAGGCCTCTTTATTCCGTTCC
CAATAAAAGCTCGCAAGTGAACGCGCCTAAACGCTTAATTCGTGTCGCTC
ACCTACCCCCCCTTGCCCCCCCCGCCCCCGCCCCCCCCACCCCACCCTTT
CACCCGCGCTTGCTACACGTCCGCTTCCTGTTTATTCAAGCCCCCTGCCG
GGGCCCCTCCCTCGCAGCCTCCCCCCCAGGCCCCGACCTCCGCCTACGGA
GCTCCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10183:6703..7708+

>mRNA_S-dermatodea_contig10183.136.1 ID=mRNA_S-dermatodea_contig10183.136.1|Name=mRNA_S-dermatodea_contig10183.136.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig10183:6703..7708+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAACCGAATATTGTGGGTGTTGGGTCTCCAAGCAGTGACAGCGACAG
GGGGGCTCCCATGCGCGGGGTAGACAGCAGAGGTGGGGGAGGCGGTGGTG
ACAGCGGCAATCCTCCCCCCTCGGCGGGTCGAGGGAGGGGGATGGTTCTT
CCGGCGTGGATGACAAGCCAGCGACTGACGCCACAGACGCCACAAGTTGG
TGGCCCGATGAAACCGAATATTGTGGGTGTTGGGTCTCCAAGCAGTGACA
GCGACAGGGGGGCTCCCATGCGCGGGGTAGACAGCAGAGGTGGGGGAGGC
GGTGGTGACAGCGGCAATCCTCCCCCCTCGGCGGGTCGAGGGAGGGGGAT
GGTTCTTCCGGCGTGGATGACAAGCCAGCGACTGACGCCACAGACGCCAC
AAGTTGGTGGCCCGCCCCCTGCCGGGGCCCCTCCCTCGCAGCCTCCCCCC
CAGGCCCCGACCTCCGCCTACGGAGCTCCCCCCCCTGCCGGGGCCCCTCC
CTCGCAGCCTCCCCCCCAGGCCCCGACCTCCGCCTACGGAGCTCCC
back to top