mRNA_S-dermatodea_contig10183.135.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10183.135.1
Unique NamemRNA_S-dermatodea_contig10183.135.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10183.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10183contigS-dermatodea_contig10183:5854..6285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.020221-UTR-S-dermatodea_contig10183:5853..59341622924144.020221-UTR-S-dermatodea_contig10183:5853..5934Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10183 5854..5934 +
1694079047.7477837-UTR-S-dermatodea_contig10183:5853..59341694079047.7477837-UTR-S-dermatodea_contig10183:5853..5934Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10183 5854..5934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.0335202-CDS-S-dermatodea_contig10183:5934..62851622924144.0335202-CDS-S-dermatodea_contig10183:5934..6285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 5935..6285 +
1694079047.7592463-CDS-S-dermatodea_contig10183:5934..62851694079047.7592463-CDS-S-dermatodea_contig10183:5934..6285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 5935..6285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10183.135.1prot_S-dermatodea_contig10183.135.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10183 5935..6285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10183.135.1

>prot_S-dermatodea_contig10183.135.1 ID=prot_S-dermatodea_contig10183.135.1|Name=mRNA_S-dermatodea_contig10183.135.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MGCERSGNRAPTPSVTASKEIAASFAFQSAANADRAGRLPRRSGFGGFLQ
ETFKRHFVPPCERNQAAALRCAHIYMALFMYFSRRPACSNNSNFSEQTGL
CPNLRAVQVHVHVCIYT
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mRNA from alignment at S-dermatodea_contig10183:5854..6285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10183.135.1 ID=mRNA_S-dermatodea_contig10183.135.1|Name=mRNA_S-dermatodea_contig10183.135.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig10183:5854..6285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGTCGAGTCCGTTAAATGCTAAATATGATTGCTTCCAGCCGCTGGCAA
ATGTATTGAGACAAAGAAAACGACGAGAGTGATGGGGTGTGAGCGCAGCG
GCAATCGTGCCCCCACCCCGTCGGTGACAGCGTCGAAGGAAATTGCGGCC
TCATTCGCTTTCCAGAGCGCGGCGAACGCTGACAGGGCAGGGCGCCTGCC
TCGACGCTCGGGATTTGGTGGTTTTCTTCAAGAAACCTTCAAGCGACACT
TTGTGCCACCATGCGAGAGAAACCAAGCTGCAGCGCTTCGGTGCGCACAC
ATATATATGGCTTTGTTTATGTATTTCTCACGCAGGCCAGCATGCAGTAA
TAATTCTAATTTTTCAGAACAGACGGGATTGTGTCCAAACCTGCGTGCAG
TGCAGGTCCACGTGCATGTATGCATATACACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10183:5854..6285+

>mRNA_S-dermatodea_contig10183.135.1 ID=mRNA_S-dermatodea_contig10183.135.1|Name=mRNA_S-dermatodea_contig10183.135.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig10183:5854..6285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGTGTGAGCGCAGCGGCAATCGTGCCCCCACCCCGTCGGTGACAGC
GTCGAAGGAAATTGCGGCCTCATTCGCTTTCCAGAGCGCGGCGAACGCTG
ACAGGGCAGGGCGCCTGCCTCGACGCTCGGGATTTGGTGGTTTTCTTCAA
GAAACCTTCAAGCGACACTTTGTGCCACCATGCGAGAGAAACCAAGCTGC
AGCGCTTCGGTGCGCACACATATATATGGCTTTGTTTATGTATTTCTCAC
GCAGGCCAGCATGCAGTAATAATTCTAATTTTTCAGAACAGACGGGATTG
TGTCCAAACCTGCGTGCAGTGCAGGTCCACGTGCATGTATGCATATACAC
CATGGGGTGTGAGCGCAGCGGCAATCGTGCCCCCACCCCGTCGGTGACAG
CGTCGAAGGAAATTGCGGCCTCATTCGCTTTCCAGAGCGCGGCGAACGCT
GACAGGGCAGGGCGCCTGCCTCGACGCTCGGGATTTGGTGGTTTTCTTCA
AGAAACCTTCAAGCGACACTTTGTGCCACCATGCGAGAGAAACCAAGCTG
CAGCGCTTCGGTGCGCACACATATATATGGCTTTGTTTATGTATTTCTCA
CGCAGGCCAGCATGCAGTAATAATTCTAATTTTTCAGAACAGACGGGATT
GTGTCCAAACCTGCGTGCAGTGCAGGTCCACGTGCATGTATGCATATACA
CC
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