mRNA_S-dermatodea_contig10183.134.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10183.134.1
Unique NamemRNA_S-dermatodea_contig10183.134.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10183.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10183contigS-dermatodea_contig10183:3299..4042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.9047267-CDS-S-dermatodea_contig10183:3298..33941622924143.9047267-CDS-S-dermatodea_contig10183:3298..3394Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 3299..3394 +
1694079047.6988556-CDS-S-dermatodea_contig10183:3298..33941694079047.6988556-CDS-S-dermatodea_contig10183:3298..3394Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 3299..3394 +
1622924143.9163759-CDS-S-dermatodea_contig10183:3781..40421622924143.9163759-CDS-S-dermatodea_contig10183:3781..4042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 3782..4042 +
1694079047.7073598-CDS-S-dermatodea_contig10183:3781..40421694079047.7073598-CDS-S-dermatodea_contig10183:3781..4042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10183 3782..4042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10183.134.1prot_S-dermatodea_contig10183.134.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10183 3299..4042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10183.134.1

>prot_S-dermatodea_contig10183.134.1 ID=prot_S-dermatodea_contig10183.134.1|Name=mRNA_S-dermatodea_contig10183.134.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
LPSPLVLDTQRVHTMASETAFEMTNGTGISAKESAFTGAAPASEGGEPGS
VLATARGADAGHAGWASKSGENGNREIRGARNGASRPENGNGSAAAGEEE
DGRETGEIAVAGDREKREE
back to top

mRNA from alignment at S-dermatodea_contig10183:3299..4042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10183.134.1 ID=mRNA_S-dermatodea_contig10183.134.1|Name=mRNA_S-dermatodea_contig10183.134.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig10183:3299..4042+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTACCCTCCCCGTTGGTTCTGGACACGCAGCGAGTGCACACGATGGCGTC
TGAGACCGCGTTTGAGATGACCAACGGTACCGGAATTTCGGCGAAGGTAC
GCGCCAGCGTCGAAAGGATCGCATAAAAATTGATCGGTGGCGTTCATTCC
GTCCCCTTGGGTACTGAACACCCCACCCACGCCTTTGATCCACGACCAAC
ACCTCACCGATGCCGCGCAGCTTTCGCTGCTGCGAGGATCGTACCGCGTA
CTGCGAATGCCGACGTCAAGCTGCCCCCTGTGATGATTCACGTCCATGTA
CTTCTGCATGCCATCGCCGCAGACGTCCAAGTATTGCTAGATGTTATTTT
TATCTCACATGTGTGAGGCTTTGAGCCGCCCCATCCCCGCCACGAAATCC
CTCACAACACAGACCCCCCCCACACAGCCTCTGCCCCTGACCCCTGCCCA
ACGCGCCCACACAAATCCCCGCTGCTTGCACAGGAGTCCGCATTCACCGG
TGCCGCCCCTGCCTCGGAGGGCGGAGAGCCCGGTTCGGTGTTGGCGACAG
CGAGGGGCGCCGACGCAGGCCACGCCGGCTGGGCCTCGAAGAGCGGAGAG
AACGGAAACAGGGAGATAAGGGGGGCCCGCAACGGCGCATCAAGGCCGGA
GAACGGGAACGGGTCCGCAGCAGCTGGTGAGGAGGAGGACGGGCGGGAAA
CGGGAGAGATCGCGGTTGCCGGCGACAGAGAGAAGAGGGAGGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10183:3299..4042+

>mRNA_S-dermatodea_contig10183.134.1 ID=mRNA_S-dermatodea_contig10183.134.1|Name=mRNA_S-dermatodea_contig10183.134.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig10183:3299..4042+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTACCCTCCCCGTTGGTTCTGGACACGCAGCGAGTGCACACGATGGCGTC
TGAGACCGCGTTTGAGATGACCAACGGTACCGGAATTTCGGCGAAGCTAC
CCTCCCCGTTGGTTCTGGACACGCAGCGAGTGCACACGATGGCGTCTGAG
ACCGCGTTTGAGATGACCAACGGTACCGGAATTTCGGCGAAGGAGTCCGC
ATTCACCGGTGCCGCCCCTGCCTCGGAGGGCGGAGAGCCCGGTTCGGTGT
TGGCGACAGCGAGGGGCGCCGACGCAGGCCACGCCGGCTGGGCCTCGAAG
AGCGGAGAGAACGGAAACAGGGAGATAAGGGGGGCCCGCAACGGCGCATC
AAGGCCGGAGAACGGGAACGGGTCCGCAGCAGCTGGTGAGGAGGAGGACG
GGCGGGAAACGGGAGAGATCGCGGTTGCCGGCGACAGAGAGAAGAGGGAG
GAGGAGTCCGCATTCACCGGTGCCGCCCCTGCCTCGGAGGGCGGAGAGCC
CGGTTCGGTGTTGGCGACAGCGAGGGGCGCCGACGCAGGCCACGCCGGCT
GGGCCTCGAAGAGCGGAGAGAACGGAAACAGGGAGATAAGGGGGGCCCGC
AACGGCGCATCAAGGCCGGAGAACGGGAACGGGTCCGCAGCAGCTGGTGA
GGAGGAGGACGGGCGGGAAACGGGAGAGATCGCGGTTGCCGGCGACAGAG
AGAAGAGGGAGGAG
back to top