mRNA_S-dermatodea_contig1018.133.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1018.133.1
Unique NamemRNA_S-dermatodea_contig1018.133.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: D7FVN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN7_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 1.630e-95
Identity = 171/240 (71.25%), Postives = 197/240 (82.08%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFTEPAPKVFLS-VHSSTH---LQNMWTTRVKPPATAP 708
            KALR+FR                VALFAVDPDSGNPVGFTP++LL+PLDAF XXXXXXXXXXXXXXXFFLLQ+L +E +E++ ++MF KYD+D+SGYIEYAEFKKIWVR+ NVKKEL +RGVKIPK+ATN  L NMLEQI+DAEEDRERRA+AEAERWAKWQLLLKDKRRAYEKA+RRT +ELK+ALDAGGSVW+FGTGPFGEFT P P+      H   H   +++MW TRV PPATAP
Sbjct:  114 KALRFFRXXXXXXXXXXXXXXXXVALFAVDPDSGNPVGFTPSALLTPLDAFXXXXXXXXXXXXXXXXFFLLQFLGIETTEMKLEEMFKKYDTDQSGYIEYAEFKKIWVRMTNVKKELLERGVKIPKIATNRTLYNMLEQILDAEEDRERRAMAEAERWAKWQLLLKDKRRAYEKAQRRTKSELKAALDAGGSVWMFGTGPFGEFTAPPPRTLKQGEHEFAHYDDVKSMWNTRVNPPATAP 353          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A836CDL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDL9_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.010e-69
Identity = 125/235 (53.19%), Postives = 159/235 (67.66%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFT-EPAPKVFLSVHSSTH---LQNMWTTRVKP 693
            KALRYFR C              +ALFAVDPD+GNPVGF PNSLLSP+DAF+               FFLLQ+L +EVSE + + +F +YD++ +G IEY EFKKIWVRLANVKKEL+DRG+KIPK+AT+  L   LE+I+D EE+RE RA+AEAERW +WQ LL+ KR A+ +A+ R   ELK+ALDA GSV+VFGTG + EF  +P  + F   +   H   L+ +W  RV P
Sbjct:   75 KALRYFRTCXXXXXXXXXXXXXXMALFAVDPDNGNPVGFAPNSLLSPMDAFDMFDTDKSGNIDEDEFFFLLQFLGVEVSEERLESLFKQYDTNGNGTIEYDEFKKIWVRLANVKKELADRGIKIPKLATHGQLVRKLERILDEEEEREARALAEAERWGRWQALLRGKRAAHRRAKLRAEAELKTALDAAGSVYVFGTGAYREFAADPPREAFQGRYRYQHWDLLKELWGRRVAP 309          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A6G0XXD3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD3_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.180e-52
Identity = 104/237 (43.88%), Postives = 147/237 (62.03%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFT-EPAPKVFLSVHSSTHLQNMWTTRVKPPATAP 708
            KA+R F  CD DGSGE+DLEEF++A+FAVDP++GN +GF P+SLL+P DAF                   L+Y  ++VS+ +Q+K+F KYD+DKSG+IEY+EF+ +W++ A++K EL  RG+++PK  T   L   L  I+D EE RE  A+ EA+ +  WQL    +     KA  R   EL +ALDA G V++ G G +GEF  +PA +  L     TH+  +W +RV P  T P
Sbjct:  133 KAIRIFDSCDKDGSGEIDLEEFKMAMFAVDPNTGNTLGFAPSSLLTPKDAFHLFDSNGSGKLDELEFADALEYFGMDVSDAKQEKLFHKYDTDKSGFIEYSEFRAMWLQCADLKHELMSRGIEVPKFTTRTALMQNLANILDEEERREEEAMEEAKWFHHWQLERLRRVELARKAALRAQDELAAALDAAGQVYMLGPGQYGEFKGDPASRDELLFDRYTHVSEIWQSRVFPTYTPP 369          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A485KYY0_9STRA (Aste57867_12943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYY0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.980e-52
Identity = 101/232 (43.53%), Postives = 148/232 (63.79%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFT-EPAPKVFLSVHSSTHLQNMWTTRVKP 693
            KA+R F MCD D SGE+DLEEF++A+F VDP++GN +GF P+SLLSP DAF                   L+Y  + VS+ +Q+K+F KYDSDKSGYI+Y+EF+ +W++ A+++ EL  RG++IPK AT   L  +L +++D EE  E +A+AEA+ + +WQ+    ++    KA  R   EL +ALDA G V+V G+G  G+F   PA +  +     TH+ ++W  RV P
Sbjct:  132 KAIRIFDMCDKDRSGEIDLEEFKMAMFTVDPNTGNSLGFAPSSLLSPKDAFHLFDSNGSGRLDELEFADALEYFGMTVSDAKQEKLFQKYDSDKSGYIDYSEFRVMWLQCADLRHELGARGIEIPKYATRKTLMQILTKVLDEEERIEDQALAEAKWYHEWQMEKIRRQELARKAGLRAQDELAAALDAAGQVYVLGSGHRGQFGGNPASRDTMLYDGYTHVSDIWQARVFP 363          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A024UUX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUX4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.610e-52
Identity = 102/232 (43.97%), Postives = 145/232 (62.50%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEF-TEPAPKVFLSVHSSTHLQNMWTTRVKP 693
            KA+R F  CD DGSGE+DLEEF++A+F VDP +GN +GF+P+SLL+P D F                   L+Y    V++ +Q+++F KYD+DKSG+IEY+EF+ +W+  A+VK EL+ RGV +PK AT   L  +L + +D EE RE  A+AEA+ + +WQL    ++   +KA  R   EL +ALDA G V+V G G  G+F +EPA +  L     TH+  +W  RV P
Sbjct:  136 KAIRIFDTCDKDGSGEIDLEEFKMAMFTVDPTTGNSLGFSPSSLLTPKDTFHLFDSNGSGQLDELEFADALEYFGFRVTDAKQERLFQKYDTDKSGFIEYSEFRAMWLECADVKHELASRGVDVPKYATRKTLMQILAKHLDDEERREEEAMAEAKWFHEWQLEKIRRKSLADKATLRAQDELAAALDAAGQVYVLGPGQHGQFNSEPAARDALLYDGYTHVSEIWQARVVP 367          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A662WT10_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT10_9STRA)

HSP 1 Score: 187 bits (475), Expect = 8.570e-52
Identity = 104/234 (44.44%), Postives = 149/234 (63.68%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFT-EPAPKVFLSVHSSTHLQNMWTTRVKPPA 699
            KA+R FR CD+DG GE+D  EF++ALFAVDP SGN +GF+P++LL P DAFE                 +L+Y D++VS+ +Q+ +F KYD DKSGYI+Y EF+ +WVRL +V++EL+ RGVKIPK A ++ L  MLEQ +D EE RE  A AEA+++ + Q   + + +   KA  R   EL +ALDA G V++ G+G + +F  EP  +          +  +W++RV P A
Sbjct:   74 KAMRIFRNCDTDGGGEIDRTEFKMALFAVDPVSGNTLGFSPSTLLGPRDAFELFDEDGTGQIDELEFADVLEYFDMDVSDAKQETIFKKYDKDKSGYIDYKEFRAMWVRLVDVREELTKRGVKIPKHAASSKLYQMLEQFLDEEEAREALAFAEAQKFLQKQRNKELREQLARKAIVRAEDELAAALDAAGQVYIIGSGRYDQFVGEPITQDEELFPGFKAVSEIWSSRVNPTA 307          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: W4H9F4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9F4_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.930e-51
Identity = 101/232 (43.53%), Postives = 145/232 (62.50%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFT-EPAPKVFLSVHSSTHLQNMWTTRVKP 693
            KA+R F  CD DGSGE+D+EEF++A+F VDP +GN +GF+P+SLL+P DAF                   L+Y    V++ +Q+++F KYD+DKSG+IEY+EF+ +W++ AN+K EL  RGV +PK AT      +LE+ +D EE RE  A+ EA+ + +WQL    +R    KA  R   EL +ALDA G V+V G+G  G+F  +PA +  L     TH+  +W +RV P
Sbjct:  130 KAIRIFDTCDKDGSGEIDMEEFKMAMFMVDPTTGNSLGFSPSSLLTPKDAFHLFDSNGSGQLDELEFADALEYFGFSVTDAKQERLFLKYDTDKSGFIEYSEFRAMWLQCANIKHELVSRGVDVPKYATRKTHMQILEKALDEEERREDEAMDEAKWFHEWQLEKIRRRTLAAKAALRAQDELAAALDAAGQVYVLGSGQHGQFNGDPAARDALVYDGYTHVSEIWQSRVLP 361          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A8J2SRF7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRF7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.600e-51
Identity = 108/262 (41.22%), Postives = 147/262 (56.11%), Query Frame = 1
Query:   16 FRMCDSDGSGEVDLEEFRV------------------------------------ALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFTEPAPKVFLSVHSSTH--LQNMWTTRV 687
            F+  D+DGSGE+DLEEF+V                                    ALFA DP++GNP+GF PN+LL+P+DAFE               +F+L+YL LEVS+  Q+++F KYD        Y EF++IW+ +A+VKKEL+DRGV +PK A+   L  +LE+ +D EE++ERRA+AEAERW  W+ +L  K    + ARRR   EL  ALDA G ++VFG G  G+F     K        TH  +Q +WT RV
Sbjct:   86 FKRFDTDGSGEIDLEEFKVMLKKLKIHMSSAKAVKYXXXXXXXXXXXXXXXXXXXALFACDPNNGNPIGFAPNALLTPIDAFEMFDEDGSGNINEDEFYFVLEYLKLEVSDANQERLFLKYDKXXXXXXXYDEFRQIWLAVADVKKELTDRGVDVPKFASRKKLERILEKCLDEEEEQERRAMAEAERWRTWRAILDQKNEYIKHARRRAQIELCKALDAAGQIYVFGRGARGQFGAQGEK------DGTHEIVQKLWTRRV 341          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A6A5AEZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AEZ5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.360e-50
Identity = 99/235 (42.13%), Postives = 142/235 (60.43%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPF---------GEFT-EPAPKVFLSVHSSTHLQNMW 675
            KA+R F  CD DGSGE+D+EEF++A+F VDP +GN +GF+P+SLL+P DAF                   L+Y    V++ +Q+++F KYD+DKSG+IEY+EF+ +W++ AN+K EL  RGV +PK AT   L  +LE+ +D EE RE  A+ EA+ + +WQL    +R    KA  R   EL +ALDA G V+V G+G           G+F  +PA +  L     TH+  +W
Sbjct:   92 KAIRIFDTCDKDGSGEIDMEEFKMAMFMVDPTTGNSLGFSPSSLLTPKDAFHLFDSNGSGQLDELEFADALEYFGFSVTDAKQERLFLKYDTDKSGFIEYSEFRAMWLQCANIKHELVSRGVDVPKYATRKTLMQILEKALDEEERREDEAMDEAKWFHEWQLEKIRRRTLAAKAALRAQDELAAALDAAGQVYVLGSGQHVPANESHFTGQFNGDPAARDALVYDGYTHVSEIW 326          
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Match: A0A662WMU7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMU7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.480e-50
Identity = 96/205 (46.83%), Postives = 136/205 (66.34%), Query Frame = 1
Query:    1 KALRYFRMCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEXXXXXXXXXXXXXXXFF-LLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIWVRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAERWAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEF 612
            KA+R FR CD+DG GE+D  EF++ALFAVDP SGN +GF+P++LL P DAFE                  +L+Y D++VS+ +Q+ +F KYD DKSGYI+Y EF+ +WVRL +V++EL+ RGVKIPK A ++ L  MLE+ +D EE RE  A AEA+ + + Q   + + +   KA  R   EL +ALDA G V++ G+G + +F
Sbjct:  116 KAMRIFRKCDTDGGGEIDRTEFKMALFAVDPVSGNTLGFSPSTLLGPRDAFELFDEDGTGQIDELEFAQDVLEYFDMDVSDAKQETIFKKYDKDKSGYIDYKEFRAMWVRLVDVREELAKRGVKIPKHAASSKLHQMLEEFLDDEEAREALAFAEAQEFLQKQRNKELREQLARKAIVRAEDELAAALDAAGQVYIIGSGRYDQF 320          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1018.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN7_ECTSI1.630e-9571.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDL9_9STRA1.010e-6953.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0XXD3_9STRA1.180e-5243.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KYY0_9STRA1.980e-5243.53Aste57867_12943 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UUX4_9STRA5.610e-5243.97Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A662WT10_9STRA8.570e-5244.44Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W4H9F4_9STRA1.930e-5143.53Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8J2SRF7_9STRA2.600e-5141.22Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6A5AEZ5_9STRA1.360e-5042.13Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A662WMU7_9STRA1.480e-5046.83Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1018contigS-dermatodea_contig1018:20995..23172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue5e-77
Seed eggNOG ortholog2880.D7FVN7
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionguanyl nucleotide exchange factor
Ec32 orthologEc-01_006060.1
Exons5
Model size708
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1018.133.1prot_S-dermatodea_contig1018.133.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1018 20995..23151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.8036208-CDS-S-dermatodea_contig1018:20994..210701622924143.8036208-CDS-S-dermatodea_contig1018:20994..21070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 20995..21070 -
1694079047.6346648-CDS-S-dermatodea_contig1018:20994..210701694079047.6346648-CDS-S-dermatodea_contig1018:20994..21070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 20995..21070 -
1622924143.8150728-CDS-S-dermatodea_contig1018:21412..216041622924143.8150728-CDS-S-dermatodea_contig1018:21412..21604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 21413..21604 -
1694079047.6488724-CDS-S-dermatodea_contig1018:21412..216041694079047.6488724-CDS-S-dermatodea_contig1018:21412..21604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 21413..21604 -
1622924143.8270488-CDS-S-dermatodea_contig1018:21918..221271622924143.8270488-CDS-S-dermatodea_contig1018:21918..22127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 21919..22127 -
1694079047.6584444-CDS-S-dermatodea_contig1018:21918..221271694079047.6584444-CDS-S-dermatodea_contig1018:21918..22127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 21919..22127 -
1622924143.840157-CDS-S-dermatodea_contig1018:22481..225561622924143.840157-CDS-S-dermatodea_contig1018:22481..22556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 22482..22556 -
1694079047.6671665-CDS-S-dermatodea_contig1018:22481..225561694079047.6671665-CDS-S-dermatodea_contig1018:22481..22556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 22482..22556 -
1622924143.856175-CDS-S-dermatodea_contig1018:23016..231511622924143.856175-CDS-S-dermatodea_contig1018:23016..23151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 23017..23151 -
1694079047.6787179-CDS-S-dermatodea_contig1018:23016..231511694079047.6787179-CDS-S-dermatodea_contig1018:23016..23151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1018 23017..23151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.8678977-UTR-S-dermatodea_contig1018:23151..231721622924143.8678977-UTR-S-dermatodea_contig1018:23151..23172Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1018 23152..23172 -
1694079047.688269-UTR-S-dermatodea_contig1018:23151..231721694079047.688269-UTR-S-dermatodea_contig1018:23151..23172Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1018 23152..23172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1018.133.1

>prot_S-dermatodea_contig1018.133.1 ID=prot_S-dermatodea_contig1018.133.1|Name=mRNA_S-dermatodea_contig1018.133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=229bp
MCDSDGSGEVDLEEFRVALFAVDPDSGNPVGFTPNSLLSPLDAFEMFDED
KSGQIDEDEFFFLLQYLDLEVSEVQQDKMFAKYDSDKSGYIEYAEFKKIW
VRLANVKKELSDRGVKIPKVATNNMLSNMLEQIIDAEEDRERRAIAEAER
WAKWQLLLKDKRRAYEKARRRTTTELKSALDAGGSVWVFGTGPFGEFTEP
APKVFLSVHSSTHLQNMWTTRVKPPATAP
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mRNA from alignment at S-dermatodea_contig1018:20995..23172-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1018.133.1 ID=mRNA_S-dermatodea_contig1018.133.1|Name=mRNA_S-dermatodea_contig1018.133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2178bp|location=Sequence derived from alignment at S-dermatodea_contig1018:20995..23172- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCTCTAAGGTATTTTCGCATGTGCGACTCCGACGGGTCCGGAGAGGT TGACCTGGAGGAATTCAGGGTGGCGTTGTTCGCCGTTGATCCGGACAGCG GCAACCCCGTTGGGTTTACGCCAAACAGCCTTCTGAGTCCACTCGACGCC TTTGAGGTGCGATGGAAATGACGCCCTTCGTGCTTTGTTGAAAAAGGTTT TGAACACTTGTAGGTGCATGTTTTGTTCGGGTGGGTACACATGAGCATTG CCAACGGAATTGTGGCGGGTTAGGCACGACTTTACCCCCCAAGAGATAGA TGCTTTTGATTGACCCTCGGCAACCCTGCTGAAATGATTGCATTGAGATA TTGGCGAAAGGGTGTTTAGGCTCGCCAGAGAAACAAGAGGCCTACCGGGG GCTCATGCGCATCATACTCGTTGCAGTCGGCCTGCGCTCGCTGTTAAATG AAGGACACGTCGTACCAGATGCCACGCGTTTAATCGACTGCACGATCGTG ACGTGAATATGGACACCCCGAGTCGTCCGCCCAAGTTGACCCCTCCCAAT CTGCCTTTCCTTCCGCTGATATACTGCTGGCGCTCACCAATGTATATGCT CGCGTTGATGTTATAGATGTTCGACGAGGACAAGAGCGGGCAGATTGACG AAGATGAGTTCTTCTTTCTCTTACAGTACCTTGACCTGGAGGTGAGCATT GGATAAAAAATCAAAGGGAGCCTTGAACTCTGGGCGCTTCGACGATTCCA GTACTTGATCCAAAAGAGAGTCGCCGCCGACGCTCTTGGTGAGTACATCG CTGAGCAGGCCAGCAACGCTAAGCTTACAACATATTTTCCGATGATCGAT CGCGCTTTGCACACTGTACAGAGCGGCACAATCGAGTTCACGCTTCGAAG TGCATAGCAACCACCGATAAGTCTCTCTGTCTGATTTAATATATCATGTG CACATCGCAAACGCAGCAAACCAACTGCCGGAACCACCACAACCACCGCC GGCGGATTGTTCCGTGACGCCCCGTCCCTCTCCTATATTGCCAAGGTTTC GGAAGTGCAGCAGGACAAGATGTTCGCCAAGTACGACTCAGACAAATCCG GCTACATCGAGTACGCGGAGTTCAAGAAGATCTGGGTGCGTCTTGCCAAC GTCAAGAAGGAGCTCTCCGACCGAGGAGTCAAAATCCCTAAGGTTGCCAC GAACAACATGCTCTCCAACATGCTCGAGCAAATCATCGACGCCGAGGAAG ACAGGTAGACGAAGGTTTCCAATCACCGTGAACCGAGAGACACGCGTCCC GCGCGCTTTGAACAAGCACGACACCCGCCGAGATAAACCAAAGGGTTAGT TGGGGTTATCGAGAGAAGCCAACCGGTCGATTGGGGTAGTCACACTCTTG ATAGTACCCGGTCTCGGTAGAGATCGGAAAACACGATCATCAACCAAAAT ACCAATTGCATAGCCTAATATCAGTGTCGCGCGGGTCCATTGGCTGGGAG TTGAATCTGTCCACCCCTGTCGCTTCTCCCGTTAGCTTGACTTTATTATT CTCGTGCAAACCCACCAGGGAACGCCGCGCAATAGCAGAGGCAGAACGAT GGGCCAAGTGGCAGCTGCTGCTTAAGGACAAGCGGAGAGCATATGAAAAA GCGCGGCGACGCACCACAACGGAGCTCAAGTCCGCGCTTGACGCCGGGGG GTCGGTGTGGGTATTCGGCACGGGGCCTTTTGGAGAATTCACCGAGCCTG CGCCAAAGGTGTTGAAGCAGGGAGGGCACAAGTTTGTTCACTACGACGTC ATGCGGGTGAGAAGCGAACCAATGGGTGCTGGAATTCCCTGCTGTTGCCG AAAATGAGTGCGTCAACCAGCGTAAGTTGCCAGATTGGGGAAGGGGAGAG CGCTTCGCGATTCGTTCGCCCTTGGAAGGGCAAAGCTGGCCACTAGACCA TCTCGTTAGGAGTGCAAAACTGCCGCCATCTGCATGTGATATGGCGGACG CGAGGTACCCGACGTTGTATGCACCGGCAGAACTGCATCCTGCACGAAGA AGAGCCCCCCCGGAACATAGCCACCGGCACCCCGCGCCTGCTAGCCGTTG AGGTTTTTGTCCGTACACTCCTCCACACATTTGCAGAATATGTGGACCAC TCGAGTGAAACCTCCGGCAACCGCACCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1018:20995..23172-

>mRNA_S-dermatodea_contig1018.133.1 ID=mRNA_S-dermatodea_contig1018.133.1|Name=mRNA_S-dermatodea_contig1018.133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at S-dermatodea_contig1018:20995..23172- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGACTCCGACGGGTCCGGAGAGGTTGACCTGGAGGAATTCAGGGT
GGCGTTGTTCGCCGTTGATCCGGACAGCGGCAACCCCGTTGGGTTTACGC
CAAACAGCCTTCTGAGTCCACTCGACGCCTTTGAGATGTGCGACTCCGAC
GGGTCCGGAGAGGTTGACCTGGAGGAATTCAGGGTGGCGTTGTTCGCCGT
TGATCCGGACAGCGGCAACCCCGTTGGGTTTACGCCAAACAGCCTTCTGA
GTCCACTCGACGCCTTTGAGATGTTCGACGAGGACAAGAGCGGGCAGATT
GACGAAGATGAGTTCTTCTTTCTCTTACAGTACCTTGACCTGGAGATGTT
CGACGAGGACAAGAGCGGGCAGATTGACGAAGATGAGTTCTTCTTTCTCT
TACAGTACCTTGACCTGGAGGTTTCGGAAGTGCAGCAGGACAAGATGTTC
GCCAAGTACGACTCAGACAAATCCGGCTACATCGAGTACGCGGAGTTCAA
GAAGATCTGGGTGCGTCTTGCCAACGTCAAGAAGGAGCTCTCCGACCGAG
GAGTCAAAATCCCTAAGGTTGCCACGAACAACATGCTCTCCAACATGCTC
GAGCAAATCATCGACGCCGAGGAAGACAGGTTTCGGAAGTGCAGCAGGAC
AAGATGTTCGCCAAGTACGACTCAGACAAATCCGGCTACATCGAGTACGC
GGAGTTCAAGAAGATCTGGGTGCGTCTTGCCAACGTCAAGAAGGAGCTCT
CCGACCGAGGAGTCAAAATCCCTAAGGTTGCCACGAACAACATGCTCTCC
AACATGCTCGAGCAAATCATCGACGCCGAGGAAGACAGGGAACGCCGCGC
AATAGCAGAGGCAGAACGATGGGCCAAGTGGCAGCTGCTGCTTAAGGACA
AGCGGAGAGCATATGAAAAAGCGCGGCGACGCACCACAACGGAGCTCAAG
TCCGCGCTTGACGCCGGGGGGTCGGTGTGGGTATTCGGCACGGGGCCTTT
TGGAGAATTCACCGAGCCTGCGCCAAAGGTGGAACGCCGCGCAATAGCAG
AGGCAGAACGATGGGCCAAGTGGCAGCTGCTGCTTAAGGACAAGCGGAGA
GCATATGAAAAAGCGCGGCGACGCACCACAACGGAGCTCAAGTCCGCGCT
TGACGCCGGGGGGTCGGTGTGGGTATTCGGCACGGGGCCTTTTGGAGAAT
TCACCGAGCCTGCGCCAAAGGTGTTTTTGTCCGTACACTCCTCCACACAT
TTGCAGAATATGTGGACCACTCGAGTGAAACCTCCGGCAACCGCACCTGT
TTTTGTCCGTACACTCCTCCACACATTTGCAGAATATGTGGACCACTCGA
GTGAAACCTCCGGCAACCGCACCT
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