mRNA_S-dermatodea_contig10177.130.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10177.130.1
Unique NamemRNA_S-dermatodea_contig10177.130.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10177.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10177contigS-dermatodea_contig10177:4585..4926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.553726-CDS-S-dermatodea_contig10177:4584..49261622924143.553726-CDS-S-dermatodea_contig10177:4584..4926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10177 4585..4926 +
1694079047.4277332-CDS-S-dermatodea_contig10177:4584..49261694079047.4277332-CDS-S-dermatodea_contig10177:4584..4926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10177 4585..4926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10177.130.1prot_S-dermatodea_contig10177.130.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10177 4585..4926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10177.130.1

>prot_S-dermatodea_contig10177.130.1 ID=prot_S-dermatodea_contig10177.130.1|Name=mRNA_S-dermatodea_contig10177.130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
PLLNPLTIETGKILLAPPPLLLWATLGMAVTFRGERKIKPLLPPLPFLRN
STPSPGSCTERTPHDNISEFTHKPVPLHHRICLPDRRQHQTQPKRQSYSD
QNRTSNITRYRRSL
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mRNA from alignment at S-dermatodea_contig10177:4585..4926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10177.130.1 ID=mRNA_S-dermatodea_contig10177.130.1|Name=mRNA_S-dermatodea_contig10177.130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at S-dermatodea_contig10177:4585..4926+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTACTAAACCCTTTAACTATCGAAACTGGAAAAATCCTCCTCGCTCC
TCCCCCTCTCCTCCTTTGGGCAACCCTCGGCATGGCTGTAACATTCAGAG
GGGAAAGAAAAATCAAACCTCTCCTCCCACCACTGCCCTTCCTACGCAAC
AGCACCCCTTCCCCTGGATCATGTACGGAGCGAACCCCACATGATAACAT
CTCCGAATTCACGCATAAGCCGGTGCCACTCCACCATAGGATATGCCTGC
CTGATCGGCGGCAACATCAAACACAACCGAAGAGACAGTCGTACTCGGAT
CAAAATCGGACCAGCAATATTACCCGTTACAGACGATCGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10177:4585..4926+

>mRNA_S-dermatodea_contig10177.130.1 ID=mRNA_S-dermatodea_contig10177.130.1|Name=mRNA_S-dermatodea_contig10177.130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig10177:4585..4926+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTACTAAACCCTTTAACTATCGAAACTGGAAAAATCCTCCTCGCTCC
TCCCCCTCTCCTCCTTTGGGCAACCCTCGGCATGGCTGTAACATTCAGAG
GGGAAAGAAAAATCAAACCTCTCCTCCCACCACTGCCCTTCCTACGCAAC
AGCACCCCTTCCCCTGGATCATGTACGGAGCGAACCCCACATGATAACAT
CTCCGAATTCACGCATAAGCCGGTGCCACTCCACCATAGGATATGCCTGC
CTGATCGGCGGCAACATCAAACACAACCGAAGAGACAGTCGTACTCGGAT
CAAAATCGGACCAGCAATATTACCCGTTACAGACGATCGCTCCCTCTACT
AAACCCTTTAACTATCGAAACTGGAAAAATCCTCCTCGCTCCTCCCCCTC
TCCTCCTTTGGGCAACCCTCGGCATGGCTGTAACATTCAGAGGGGAAAGA
AAAATCAAACCTCTCCTCCCACCACTGCCCTTCCTACGCAACAGCACCCC
TTCCCCTGGATCATGTACGGAGCGAACCCCACATGATAACATCTCCGAAT
TCACGCATAAGCCGGTGCCACTCCACCATAGGATATGCCTGCCTGATCGG
CGGCAACATCAAACACAACCGAAGAGACAGTCGTACTCGGATCAAAATCG
GACCAGCAATATTACCCGTTACAGACGATCGCTC
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