mRNA_S-dermatodea_contig10166.123.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE) HSP 1 Score: 207 bits (526), Expect = 1.280e-60 Identity = 115/163 (70.55%), Postives = 130/163 (79.75%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAGVSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVAVLLLTAGVGSAGAGFMSGTSDSTKPIAAALSLLFVSPLYANIAAVVRSDYSKEALSLAVNQALGPLALVLGLMGVVLR 490
YTP+LKPIPLVKNFVVA V+AA A+GAGV+STL PSVLTFFVI HRE+LMD+ DVEGD EAGVRTLPVL+GRQAA+V A LL+ GVG+AG G + GT+D +P AAALS LFV PLY N+ V RS YSKE LS A+ Q LGPLALVLGLMGVVLR
Sbjct: 253 YTPLLKPIPLVKNFVVAMVIAAAIGAGGLAAGAGVASTLTPSVLTFFVIGHREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEGTADPERPAAAALSALFVLPLYVNLFLVGRSSYSKERLSSAIEQTLGPLALVLGLMGVVLR 415
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI) HSP 1 Score: 127 bits (320), Expect = 5.900e-32 Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAGVSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVAVLLLTAGVGSAGAGFMSGTS 316
YTP+LKPIPLVKNFVVA V+ XXXXXXX AGV+STL PSVLTFFVI HRE+LMD+ DVEGD EAGVRTLPVL+GRQAA+V A LL+AGV +AG G + GT+
Sbjct: 135 YTPLLKPIPLVKNFVVAMVIXXXXXXXXXXXXAGVASTLTPSVLTFFVIGHREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEGTT 239
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A7S4U833_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U833_GUITH) HSP 1 Score: 68.6 bits (166), Expect = 2.500e-10 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASG-AGVSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVAVL 262
YTP+LK + +KN VVA V+A A G + STL PS+ F +I +E+LMD+ DV GD EAG+RT+PV+LG + A ++A+L
Sbjct: 53 YTPLLKGVLFLKNLVVAFVIAQAIVLGGLAVGDVRMQSTLLPSLYMFCLILWQEVLMDIRDVRGDAEAGIRTIPVVLGCKFAALLALL 140
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: L1JHR6_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JHR6_GUITC) HSP 1 Score: 68.6 bits (166), Expect = 3.930e-10 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASG-AGVSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVAVL 262
YTP+LK + +KN VVA V+A A G + STL PS+ F +I +E+LMD+ DV GD EAG+RT+PV+LG + A ++A+L
Sbjct: 117 YTPLLKGVLFLKNLVVAFVIAQAIVLGGLAVGDVRMQSTLLPSLYMFCLILWQEVLMDIRDVRGDAEAGIRTIPVVLGCKFAALLALL 204
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: UPI000D1C8138 (chlorophyll synthase, chloroplastic-like n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C8138) HSP 1 Score: 66.2 bits (160), Expect = 5.470e-9 Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAGVSS----TLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVV 250
YTP+ K + +VKN VVA VVA+ A +S T A ++ FF I REILMDV DV+GD GVRTLPV+ GR+ +V
Sbjct: 107 YTPLFKKVTIVKNLVVAAVVASSILAGGLAITGDAASFPMRTYASTLYLFFSILGREILMDVKDVDGDRVTGVRTLPVMFGRKLGIV 193
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A2V0P9S4_9CHLO (Geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9S4_9CHLO) HSP 1 Score: 66.6 bits (161), Expect = 7.440e-9 Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAGVSST--LAPSVL-TFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVA 256
YTP+ K + VKN VA V+A A+GAG + L P+VL F I +REILMDVTD EGD G++TLPV+LG +AA+ A
Sbjct: 193 YTPIFKRLTAVKNATVAAVIALAPLAGALAAGAGEAGARRLLPAVLWAFGGILYREILMDVTDAEGDAANGIKTLPVVLGPRAALAAA 280
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A661A791_9BACT (Uncharacterized protein n=2 Tax=bacterium TaxID=1869227 RepID=A0A661A791_9BACT) HSP 1 Score: 65.1 bits (157), Expect = 1.490e-8 Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAGVSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVAVLLL 268
YTP KP+PL+ N V+A ++ +G V T+ P V F + REI+ DV D EGD +AG+RTLP+++G+ +++++ ++L
Sbjct: 124 YTPFFKPLPLLGNLVIA-LLGGFAFIWGGLAGGSVLKTIYPGVFAFLIHLSREIVKDVEDFEGDRKAGLRTLPIIIGKDKSILLSFIIL 211
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A0D2MBQ7_9CHLO (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MBQ7_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 4.400e-8 Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAG---VSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVA 256
YTPV K + +KN VA V+A A+GAG V L ++ F + REI+MD+TD+EGD AG++TLPV++G++ A++ A
Sbjct: 135 YTPVFKKLTAIKNATVAVVIALAPLGGALAAGAGEAGVMRLLPATLFAFSGVMFREIVMDLTDLEGDRAAGIKTLPVMIGQRGALLAA 222
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A7S2YZI2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2YZI2_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 5.990e-8 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query: 2 YTPVLKPIPLVKNFVVAGVVAAXXXXXXXASGAGVSSTLA--PSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLG-RQAAVVVAVLLLTA 274
YTP+LKP +KN VA V++A A+ AG + +A P + F + REI+MD+TDVE D +A VRT+PV G AA +V LL+A
Sbjct: 25 YTPLLKPATAIKNVSVAFVISAAAVAGSLAATAGNWAAVAKLPPIFLFLCVVAREIVMDITDVEEDADANVRTIPVRFGTHNAARIVEAFLLSA 118
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Match: A0A7S3F397_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F397_9EUKA) HSP 1 Score: 60.5 bits (145), Expect = 6.250e-8 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query: 101 GVSSTLAPSVLTFFVIAHREILMDVTDVEGDMEAGVRTLPVLLGRQAAVVVAVLLLTAGVGSA-GAG 298
G+++ P V+TF I HRE+LMD+ D+ GD AGV TLPV+LGRQ A++V++L L + A GAG
Sbjct: 9 GLAAVWRPMVITFCTIWHRELLMDIKDMPGDAIAGVATLPVMLGRQGALLVSLLPLALAIAVALGAG 75 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10166.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10166.123.1 >prot_S-dermatodea_contig10166.123.1 ID=prot_S-dermatodea_contig10166.123.1|Name=mRNA_S-dermatodea_contig10166.123.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=190bp LHPGPEADTVGEELRSGRGRSRRHCRGRARLRGGGIVHAGPVGAHIFRHCback to top mRNA from alignment at S-dermatodea_contig10166:4298..7007+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10166.123.1 ID=mRNA_S-dermatodea_contig10166.123.1|Name=mRNA_S-dermatodea_contig10166.123.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2710bp|location=Sequence derived from alignment at S-dermatodea_contig10166:4298..7007+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10166:4298..7007+ >mRNA_S-dermatodea_contig10166.123.1 ID=mRNA_S-dermatodea_contig10166.123.1|Name=mRNA_S-dermatodea_contig10166.123.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at S-dermatodea_contig10166:4298..7007+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |