mRNA_S-dermatodea_contig10164.122.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10164.122.1
Unique NamemRNA_S-dermatodea_contig10164.122.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10164.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10164contigS-dermatodea_contig10164:4290..4873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10164.122.1prot_S-dermatodea_contig10164.122.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10164 4381..4797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.841463-UTR-S-dermatodea_contig10164:4289..43801622924142.841463-UTR-S-dermatodea_contig10164:4289..4380Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10164 4290..4380 +
1694079046.8800805-UTR-S-dermatodea_contig10164:4289..43801694079046.8800805-UTR-S-dermatodea_contig10164:4289..4380Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10164 4290..4380 +
1622924142.8619697-UTR-S-dermatodea_contig10164:4797..48731622924142.8619697-UTR-S-dermatodea_contig10164:4797..4873Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10164 4798..4873 +
1694079046.8961117-UTR-S-dermatodea_contig10164:4797..48731694079046.8961117-UTR-S-dermatodea_contig10164:4797..4873Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10164 4798..4873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.8547323-CDS-S-dermatodea_contig10164:4380..47971622924142.8547323-CDS-S-dermatodea_contig10164:4380..4797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10164 4381..4797 +
1694079046.8881152-CDS-S-dermatodea_contig10164:4380..47971694079046.8881152-CDS-S-dermatodea_contig10164:4380..4797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10164 4381..4797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10164.122.1

>prot_S-dermatodea_contig10164.122.1 ID=prot_S-dermatodea_contig10164.122.1|Name=mRNA_S-dermatodea_contig10164.122.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
MLECPVARVSLRQATKAPQPHGGDGGTSSTRSSGSFGLAQVRLDRDRSEE
RGWRGWHTLCCQRKPVTTARSTVGALAALLQSSARSNRLLQGLAKCQQGL
NQRQLRVYVYTAVRFDLPLKLMFALQRSVLLKSSHHEL*
back to top

mRNA from alignment at S-dermatodea_contig10164:4290..4873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10164.122.1 ID=mRNA_S-dermatodea_contig10164.122.1|Name=mRNA_S-dermatodea_contig10164.122.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=584bp|location=Sequence derived from alignment at S-dermatodea_contig10164:4290..4873+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGATGGCCGACTTCGCCGACGCGGCTGCCACCATCACCGCCCCAGACAG
CAGCGCCCGAGGTGCACTCACCCTCATCGAGAACCATCGCGATGCTGGAG
TGCCCCGTTGCGAGAGTGAGCCTCCGCCAAGCCACCAAGGCCCCGCAGCC
GCATGGTGGTGATGGAGGCACTTCAAGCACGCGATCGTCGGGGAGCTTCG
GCCTCGCACAGGTGCGGCTCGATCGTGACCGGAGCGAGGAGCGAGGGTGG
CGAGGTTGGCATACGCTGTGCTGCCAACGCAAGCCGGTAACCACAGCGAG
ATCGACAGTAGGAGCGCTAGCAGCATTGCTGCAAAGCAGCGCACGCAGCA
ATCGGTTGCTTCAAGGCCTCGCCAAATGCCAGCAAGGTTTGAACCAGAGG
CAATTGCGGGTATATGTATATACTGCTGTCAGGTTCGATCTACCTTTGAA
GCTGATGTTTGCTCTGCAGCGGAGTGTTCTGCTCAAGTCTTCCCACCACG
AACTGTAATGTCGTGAGCTAGAGGCAGTCGGGATGGAAAGCACTACTGTT
GTTGTGTCCCTAGGTTGGCTGCAGGCGGCAGGTA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10164:4290..4873+

>mRNA_S-dermatodea_contig10164.122.1 ID=mRNA_S-dermatodea_contig10164.122.1|Name=mRNA_S-dermatodea_contig10164.122.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig10164:4290..4873+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGAGTGCCCCGTTGCGAGAGTGAGCCTCCGCCAAGCCACCAAGGC
CCCGCAGCCGCATGGTGGTGATGGAGGCACTTCAAGCACGCGATCGTCGG
GGAGCTTCGGCCTCGCACAGGTGCGGCTCGATCGTGACCGGAGCGAGGAG
CGAGGGTGGCGAGGTTGGCATACGCTGTGCTGCCAACGCAAGCCGGTAAC
CACAGCGAGATCGACAGTAGGAGCGCTAGCAGCATTGCTGCAAAGCAGCG
CACGCAGCAATCGGTTGCTTCAAGGCCTCGCCAAATGCCAGCAAGGTTTG
AACCAGAGGCAATTGCGGGTATATGTATATACTGCTGTCAGGTTCGATCT
ACCTTTGAAGCTGATGTTTGCTCTGCAGCGGAGTGTTCTGCTCAAGTCTT
CCCACCACGAACTGTAAATGCTGGAGTGCCCCGTTGCGAGAGTGAGCCTC
CGCCAAGCCACCAAGGCCCCGCAGCCGCATGGTGGTGATGGAGGCACTTC
AAGCACGCGATCGTCGGGGAGCTTCGGCCTCGCACAGGTGCGGCTCGATC
GTGACCGGAGCGAGGAGCGAGGGTGGCGAGGTTGGCATACGCTGTGCTGC
CAACGCAAGCCGGTAACCACAGCGAGATCGACAGTAGGAGCGCTAGCAGC
ATTGCTGCAAAGCAGCGCACGCAGCAATCGGTTGCTTCAAGGCCTCGCCA
AATGCCAGCAAGGTTTGAACCAGAGGCAATTGCGGGTATATGTATATACT
GCTGTCAGGTTCGATCTACCTTTGAAGCTGATGTTTGCTCTGCAGCGGAG
TGTTCTGCTCAAGTCTTCCCACCACGAACTGTAA
back to top