mRNA_S-dermatodea_contig10159.117.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10159.117.1
Unique NamemRNA_S-dermatodea_contig10159.117.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10159.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10159contigS-dermatodea_contig10159:2258..4424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10159.117.1prot_S-dermatodea_contig10159.117.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10159 2258..4422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.3443727-CDS-S-dermatodea_contig10159:2257..23281622924142.3443727-CDS-S-dermatodea_contig10159:2257..2328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10159 2258..2328 +
1694079046.4787943-CDS-S-dermatodea_contig10159:2257..23281694079046.4787943-CDS-S-dermatodea_contig10159:2257..2328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10159 2258..2328 +
1622924142.3529718-CDS-S-dermatodea_contig10159:3377..35851622924142.3529718-CDS-S-dermatodea_contig10159:3377..3585Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10159 3378..3585 +
1694079046.4868433-CDS-S-dermatodea_contig10159:3377..35851694079046.4868433-CDS-S-dermatodea_contig10159:3377..3585Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10159 3378..3585 +
1622924142.3611414-CDS-S-dermatodea_contig10159:4398..44221622924142.3611414-CDS-S-dermatodea_contig10159:4398..4422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10159 4399..4422 +
1694079046.513115-CDS-S-dermatodea_contig10159:4398..44221694079046.513115-CDS-S-dermatodea_contig10159:4398..4422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10159 4399..4422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10159.117.1

>prot_S-dermatodea_contig10159.117.1 ID=prot_S-dermatodea_contig10159.117.1|Name=mRNA_S-dermatodea_contig10159.117.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
AAGDSVTAEDETGVPDDSGEDKSRALSFQPRGIGGAFKKAARKAREAAER
AAKEADKAAKKAADAAKAAAQEALKAAEKAKEEAARAAQEAAERAREAAE
K
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mRNA from alignment at S-dermatodea_contig10159:2258..4424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10159.117.1 ID=mRNA_S-dermatodea_contig10159.117.1|Name=mRNA_S-dermatodea_contig10159.117.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2167bp|location=Sequence derived from alignment at S-dermatodea_contig10159:2258..4424+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCAGGCGACTCAGTAACGGCTGAGGACGAAACCGGCGTTCCCGACGA
CAGCGGCGAGGACAAGAGTCGGTACGTGACGCTTCGTCTCACACACCACG
TAGCAGTTGAACAATTGTGTCACAAGAAAGGGTATCAACCGAGCACAGAG
CAATGCTACCACTTGTGCCACGTTGGACGGCCGTGTGCCAGAGTCAGTCG
CCCAACGAATGAGTGGCACAGAGTCAGAGCAAACACGACTGGCCCAAAGT
TTTGGTCAATAAACCCGAGAGCTCGGTAGTATTTCTCATTGTACAGACGT
ATATGAAGGGTTCGTTCGACTGGTCGCCTGCTTCCCACGCGAAATAAAAC
AACAACCTCAATGCTGCTGCTGCTGCTGCTGCATTCCACGTCGAACGCCA
CTGTACATTTTCTATTACACAACCTGTTCCTAAGTATAAACGTTGAAACG
CGGCGGGGGAGGTAGCACTTTTGACCATGCACGGGGCCGGACGTACGGGT
GAACGGATCGTGTTCAATACCCGATCATACCGTGTATCGGTACCCGGGCG
GTCCACAAGGGAGGGTCCGAGAGGTAAGGGATGCACGATGCGCGTACAAA
CTGGACAAGCAGGAGGTGCGGAAGTGAGGGTAACCCTAGGTCTAGCCCCA
ACCCCAACCCAAACCATAACCTAATCCCACCCCGGGCTAGCCTACTGGCC
GAACGTACGAGAGGTGCGGGATCTACGGAACGTACAAACTGGACAAGCGG
AGGGTGCGGACGTGCGGGGTACTGGGAGGCTAGCCTTAGCCCTAACCCCA
ACCCAACCCCGGCTCTAACCCTGACCTTAGCCTTAATCCAGCCCGCACTA
ACTGGACGTGCGGGAGAAACGATCGGTCGGTCGGTCGACCGGTCGGCAGG
TCGGTCTGTTGGCCATGTGATATGCACGGACCGGACGTCAGTTATGTACG
GCACATAGTCCAATATATATATTACGGGCCGGACAGGCCTGAAGTGCAAC
GCCCTGTCAGCACGCCTCTTACGACACATTTGTCACATTCGCTCGACATT
TGCTGCTGCTGTCGCTGCTGCTGCTGTGTTCCATGCTGAAACATACACAA
AATACATGCACGGGCATCAGTGCCCTATCGTTCCAGCCCCGTGGAATAGG
AGGCGCATTCAAGAAGGCGGCCAGAAAAGCGCGCGAAGCGGCGGAACGAG
CAGCGAAGGAAGCGGATAAGGCGGCGAAAAAGGCCGCCGATGCGGCCAAG
GCCGCTGCCCAAGAAGCTTTGAAAGCGGCGGAGAAGGCGAAGGAAGAAGC
GGCCAGGGCCGCTCAAGAGGCCGCAGAGGCAAGTCTAGCGTTCGTCTGTT
ACAACGATACATCAGGGGAAAATAAAAGTGGCGCGCAGTCTTCCTATTTG
CCAAAATAAATTACCAGAGAAGTCTGATTGGCGCAATATCCTTGGTCGAC
GGCTGACGGACGTCATCCTTGACTTCGCGTGTCTGGAAGGCATTGTCTAA
TATGTAGACGCCGCTGCCGCGAAACGCGATTTCGTTACAATGTTTTCGCG
GTTTATCGGCGATATTTGATATTTTAGCGATTTGCCCTTCGACAATTTGC
AAACACGGAAGTTGGGTAGTCGCAAAACAAACGCCAGGATTAGATGCTTG
ACCTACTTTTTATTAATAATACGTCTTTCCTGTGTTCTCATCGTATACAT
CGGCGATATGGTATAAAACTACAACAGTACATGTTGAATAATCGTGGAAT
TTTCGACATGTCCAATGCGGCGATTCGCCAACACGTTTGTTTTCGGCGCT
TGCCGCGAAACGTGGTTTCGTGACAATACTTTCACGATATCTACACAAGT
AGGCGATACGAAATATCGCGGAAATATCGATGAATCGGCTGTGGTCATGT
GCCAAACCATATTTTGTCGGCGCTTGCCGCTAAACGAGGTTTCGTGATAA
TATTTCCGCGAAATATCGACGATGTGACATGTCGCGAAAAAATCGATATG
TCGGCTGCGCCGATTTGCCAATATACTTAATCCCTTTTGTCTCGTCCTTA
CACTACAATACCTTTCCATCCAATTCCATTACTCTAAGCAGACCTCTCCA
CTAACCTTACACGCCATTTTACGTTTTTTTCTTTGCGACAGAGAGCCCGA
GAGGCGGCGGAGAAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10159:2258..4424+

>mRNA_S-dermatodea_contig10159.117.1 ID=mRNA_S-dermatodea_contig10159.117.1|Name=mRNA_S-dermatodea_contig10159.117.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig10159:2258..4424+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCAGGCGACTCAGTAACGGCTGAGGACGAAACCGGCGTTCCCGACGA
CAGCGGCGAGGACAAGAGTCGGCAGCAGGCGACTCAGTAACGGCTGAGGA
CGAAACCGGCGTTCCCGACGACAGCGGCGAGGACAAGAGTCGTGCCCTAT
CGTTCCAGCCCCGTGGAATAGGAGGCGCATTCAAGAAGGCGGCCAGAAAA
GCGCGCGAAGCGGCGGAACGAGCAGCGAAGGAAGCGGATAAGGCGGCGAA
AAAGGCCGCCGATGCGGCCAAGGCCGCTGCCCAAGAAGCTTTGAAAGCGG
CGGAGAAGGCGAAGGAAGAAGCGGCCAGGGCCGCTCAAGAGGCCGCAGAG
TGCCCTATCGTTCCAGCCCCGTGGAATAGGAGGCGCATTCAAGAAGGCGG
CCAGAAAAGCGCGCGAAGCGGCGGAACGAGCAGCGAAGGAAGCGGATAAG
GCGGCGAAAAAGGCCGCCGATGCGGCCAAGGCCGCTGCCCAAGAAGCTTT
GAAAGCGGCGGAGAAGGCGAAGGAAGAAGCGGCCAGGGCCGCTCAAGAGG
CCGCAGAGAGAGCCCGAGAGGCGGCGGAGAAGAGAGCCCGAGAGGCGGCG
GAGAAG
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