mRNA_S-dermatodea_contig10156.115.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10156.115.1
Unique NamemRNA_S-dermatodea_contig10156.115.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 7.210e-66
Identity = 129/196 (65.82%), Postives = 150/196 (76.53%), Query Frame = 1 
Query:  679 LYVGAEVGFGAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNA---------GQPA---ALYAVCLAVSMLLIVVYGAWCSLLAAVERRSGQGE 1230
            LYVG EVGFGAW+AVVVLRDDLAG+AGAALMASLFWGGIT+GRLLA+ LAV FSAG L+  NL+ GLLSS LL  +GRDG VWAA+GAA FGL MAST+PLAMSLLP AGY +S+KNSS  V+GGALGEM+VPA IA LLGPS +         G+P    ALY  C A+S+L++ VYG WCSLLA+    +    
Sbjct:  309 LYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASLFWGGITLGRLLAIQLAVPFSAGVLLTVNLVLGLLSSTLLWVIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSHFVVGGALGEMLVPACIALLLGPSGSSGNSIGDGDGEPGRSDALYGACFAISLLMVAVYGTWCSLLASSAATAAASS 504
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 4.250e-30
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1 
Query:  898 LAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNA------------GQPAALYAVCLAVSMLLIVVYGAWCSLLAAVERRSGQGE 1230
            ++ GRDG VWAA+GAA FGL MAST+PLAMSLLP AGY +S+KNSS  V+GGALGEM+VPA IA LLGPS++            G+ AALY  C AVS+LL+ VYG+WCSLLA+    +    
Sbjct:  320 ISAGRDGAVWAAMGAAGFGLSMASTYPLAMSLLPEAGYALSEKNSSRFVVGGALGEMLVPACIALLLGPSSSSSNSIGDGDEEPGRSAALYGACFAVSLLLVAVYGSWCSLLASSAATAAASS 442
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A4D9CZP9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZP9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.130e-21
Identity = 86/249 (34.54%), Postives = 121/249 (48.59%), Query Frame = 1 
Query:  505 GNKEXXXXEHKRLNASISGGLALGPEQSDETEAIPPREGTS---EKTP-PFPLVALLALFLFLYVGAEVGFGAWIAV-VVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNAGQPAALYAVCLAVSMLLIVVYGAWCSLLAAVERRSGQGEGG 1236
            G  E    + KR            PE  D    +P     S    KTP P  +  LL +FL LYVG E GFG WI+  VVL    A  + AAL+ S+FW  +TVGR +AV  A+     + +R  LL  L  +++    G    + AAV AA+FG  M+S +PL MS    AG+++   +++ +V+GG +GE  VP  I    G      P +L    LA+   LI+   A   L A V+R+  + E G
Sbjct:   35 GYDEGQRKQEKRFREKDMERSESRPESLDPHNKLPTSIKASFPASKTPLPASIKWLLTIFLGLYVGGESGFGGWISTFVVLEGTTASASQAALLVSIFWAAVTVGRAVAVGQALLVGPSWSLRFQLLISLCGALVFWVAGAASFIGAAVAAALFGYGMSSVYPLGMSWPGEAGFMLDTVDTAQLVVGGCVGEAAVPLVIG---GTMQLVGPQSLPLSILALICTLILTIAAIECLRAKVKRKPEEIEKG 280
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: K8YSW5_NANGC (Sodium-dependent glucose transporter 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSW5_NANGC)

HSP 1 Score: 102 bits (253), Expect = 1.870e-19
Identity = 77/209 (36.84%), Postives = 109/209 (52.15%), Query Frame = 1 
Query:  640 PFPLVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAG-AALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNAGQPA---ALYAVCLAVSMLLIVVYGAWCSLLAAVERRSGQGEGGP*VCRG 1254
            P  L A ++ FL +YVG EVG+G WIA V+LR  L      A+   S+FWG IT+GRLLA+PLA        +   L    L ++ LL      +  AAV + VFGL ++S FP  M L  + GY V+  ++S+ ++G  LGE ++P  I  L+G    G  +   A+ A CLA+ +L    +  W          S +GEGG  V  G
Sbjct:  197 PKSLQAGVSFFLLIYVGIEVGYGGWIATVLLRQGLTQSLPVASYSVSMFWGAITLGRLLAIPLATCLPPVPSLLLQLGLSTLGAICLLTFAFQTLWTAAVASVVFGLGLSSIFPTMMLLPEALGYQVTMWSTSTFLVGACLGEGIIPMGIGWLMGSKGFGTGSFAWAMAAACLAMWVLAGCFFSRW----RVXXXXSDEGEGGQGVGNG 401
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A7V5YWG8_9CHLR (MFS transporter n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5YWG8_9CHLR)

HSP 1 Score: 102 bits (253), Expect = 3.050e-19
Identity = 80/216 (37.04%), Postives = 108/216 (50.00%), Query Frame = 1 
Query:  577 PEQSDETEAIPPREGTSEKTPPFPLVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGI-VWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNAGQPAALYAVCLAVSMLLIVVYGAWCSLLAAVERRSG 1221
            P  ++  EA P   G     P + LV L A FLFLYVGAEVGFG W+    L   L+G A AA + S FWG  TVGR L +PLA RFS   ++ A++ G + S  LLLA       +W  +G    GL MAS FP  +SL       ++ + +  ++ GG  G M++P  +  L  P   G   A      A+   L+V      +L A   RR+G
Sbjct:  254 PSPANGVEAEPGAGGR----PNYGLVVLAAAFLFLYVGAEVGFGGWVYTYALAMGLSGPAMAAYLTSAFWGSFTVGRFLGIPLAARFSPQAILAADVAGCIASLALLLAWPHSAAALW--LGTLGVGLAMASIFPTTLSLAERR-MAITGRATGWLLAGGGAGSMLLPWLMGQLFEPWGPGAAMA------AILADLLVAGAVLAALNATWARRAG 456
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A535HXZ5_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HXZ5_9CHLR)

HSP 1 Score: 99.4 bits (246), Expect = 1.130e-18
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:  649 LVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAAL---LGPS 1107
            LVAL+ LF FLY GAE  FG WI        LA    AA + S FWG +TVGRLL++PLA RFS   ++ A+LLGG+LS MLL+  G   +    +G A FGL MAS FP  ++L       ++ + +    +G +LG M  P  I  L   +GP+
Sbjct:  212 LVALIMLFFFLYAGAEGAFGGWIFSYATGLRLADGPTAAYLTSTFWGALTVGRLLSIPLAARFSPRVILLADLLGGVLS-MLLILTGSQSLALTWLGTAAFGLSMASIFPTTLALAERR-MTITGQVTGWFFVGASLGGMFWPWLIGQLFDAIGPA 365
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A7V2AD98_9GAMM (MFS transporter n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V2AD98_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 4.450e-18
Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 1 
Query:  649 LVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGI-VWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNAGQPAALYAVCLAVSMLLIVV 1173
            +VAL+ALFL LYVGAEV FG WI        LA E  AA + S+FWGG+TVGRL  +P+A R     ++  +L G LLS  L+LA+    + +WA  G    G  MAS FP A++L  +    ++ + +   +IG ++G M +P  I  L  P  A     +    LA  + ++VV
Sbjct:   83 VVALVALFLLLYVGAEVAFGGWIYSYAAALGLATETSAATLTSVFWGGLTVGRLAGIPIAARLRPRTILLFDLAGCLLSVGLILALPTSRVALWA--GTIAAGAAMASIFPAAITLAGNR-VRITGRITGWFLIGSSIGSMTIPWLIGQLFEPVGAHVTMWIVLATLAADLAVLVV 255
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: W7TVG0_9STRA (Sodium-dependent glucose transporter 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVG0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.290e-18
Identity = 74/202 (36.63%), Postives = 107/202 (52.97%), Query Frame = 1 
Query:  640 PFPLVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAG-AALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNAGQPA---ALYAVCLAVSMLLIVVYGAWCSLLAAVERRSGQGEG 1233
            P  L A ++ FL +YVG EVG+G WIA V+LR  L      A+   S+FWG IT+GRLLA+PLA        +   L    L ++ LL      +  AAV + VFGL ++S FP  M L  + GY V+  ++S+ ++G  LGE ++P  I  L+G    G  +   A+ A CLA+ +L    +  W  + A      G+G G
Sbjct:  300 PKSLQAGVSFFLLIYVGIEVGYGGWIATVLLRQGLTQSLPVASYSVSMFWGAITLGRLLAIPLATCLPPVPSLLLQLGLSTLGAICLLTFAFQTLWTAAVASVVFGLGLSSIFPTVMLLPEALGYQVTMWSTSTFLVGACLGEGIIPMGIGWLMGSKGIGTGSFAWAMAAACLALWVLAGCFFSRW-RVRAGTGCPPGRGGG 500
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A3A0AXV0_9CHLR (MFS domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AXV0_9CHLR)

HSP 1 Score: 96.7 bits (239), Expect = 1.010e-17
Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 1 
Query:  643 FPLVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLSSMLLLAV-GRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAALL---GPSNAGQPAALYAVCLAVSMLLIVVYG 1179
            +PLV L+A F+FLYVGAEVGFG WI    +   L GE  A  + SLFWG +T+GRL ++P+A R     ++ A++LG L S +L+LA+      +W  +  A F L  AS FP  ++        VS   +S+ ++G +LG M++P  I  L    GP        +  +  AV  + +++YG
Sbjct:  209 WPLVGLIAFFMFLYVGAEVGFGGWIYTYAVSMGLVGETAAFYLTSLFWGALTLGRLASIPIAARVRPRTILLADILGALASVLLILALPASPWALWVGIFGAGFAL--ASIFPTVITWAERR-ITVSGLVTSTFLVGASLGAMLLPWLIGQLFEGRGPQITMIAILIDLLATAVIYVALMIYG 388
[Close]
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Match: A0A3M1H076_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1H076_9CHLR)

HSP 1 Score: 96.3 bits (238), Expect = 1.520e-17
Identity = 76/198 (38.38%), Postives = 106/198 (53.54%), Query Frame = 1 
Query:  649 LVALLALFLFLYVGAEVGFGAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLVRANLLGGLLS-SMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSAGYVVSDKNSSSMVIGGALGEMVVPAFIAAL---LGPSNAGQPAALYAVCLAVSMLLIVVYGAWCSLLAAV---ERRSG 1221
            LVALLA+FLFLYVGAEVG+G W+    LR  LA  A AA + S FWG  TVGRL+ +P A+RF  G ++  +LLG L+  + + L      ++W  +G    G F+AS FP  ++L     +V  +  +     G +LG M VP  +  L   LGP              A+ ++L+V   A  ++LAAV    RR G
Sbjct:  212 LVALLAVFLFLYVGAEVGYGGWVYSYALRRGLADAATAAYLTSAFWGVFTVGRLVGIPAALRFRTGPVLLVDLLGALVGVAAVWLWPDSRPVLW--LGTMATGFFLASIFPNTLALAGEYLHVTGEM-TGWFFAGASLGAMAVPWLVGQLFEALGPQ-------------ALPLILLVDLLAAVAVLAAVMLAARRMG 393
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10156.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9W6_9PHAE7.210e-6665.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS47_ECTSI4.250e-3058.54Major facilitator superfamily sugar transporter n=... [more]
A0A4D9CZP9_9STRA3.130e-2134.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YSW5_NANGC1.870e-1936.84Sodium-dependent glucose transporter 1 n=1 Tax=Nan... [more]
A0A7V5YWG8_9CHLR3.050e-1937.04MFS transporter n=1 Tax=Anaerolineae bacterium Tax... [more]
A0A535HXZ5_9CHLR1.130e-1842.95MFS transporter (Fragment) n=1 Tax=Chloroflexi bac... [more]
A0A7V2AD98_9GAMM4.450e-1838.64MFS transporter n=1 Tax=Chromatiales bacterium Tax... [more]
W7TVG0_9STRA6.290e-1836.63Sodium-dependent glucose transporter 1 n=2 Tax=Mon... [more]
A0A3A0AXV0_9CHLR1.010e-1736.61MFS domain-containing protein n=1 Tax=Chloroflexi ... [more]
A0A3M1H076_9CHLR1.520e-1738.38MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10156contigS-dermatodea_contig10156:446..5627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score87.8
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog192875.XP_004348376.1
Preferred nameKIAA1919
KEGG koko:K08175
KEGG TC2.A.1.7
GOsGO:0003674,GO:0005215,GO:0005355,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0015144,GO:0015145,GO:0015149,GO:0015749,GO:0022857,GO:0034219,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:1904659
EggNOG free text desc.sodium-dependent glucose transporter
EggNOG OGs28Z0Q@1,2R5UW@2759,38BCW@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size2048
Cds size1137
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.097917-UTR-S-dermatodea_contig10156:445..5501622924142.097917-UTR-S-dermatodea_contig10156:445..550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10156 446..550 +
1694079046.3121605-UTR-S-dermatodea_contig10156:445..5501694079046.3121605-UTR-S-dermatodea_contig10156:445..550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10156 446..550 +
1622924142.1921816-UTR-S-dermatodea_contig10156:4821..56271622924142.1921816-UTR-S-dermatodea_contig10156:4821..5627Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10156 4822..5627 +
1694079046.3638966-UTR-S-dermatodea_contig10156:4821..56271694079046.3638966-UTR-S-dermatodea_contig10156:4821..5627Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10156 4822..5627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.1164317-CDS-S-dermatodea_contig10156:550..7511622924142.1164317-CDS-S-dermatodea_contig10156:550..751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 551..751 +
1694079046.3220477-CDS-S-dermatodea_contig10156:550..7511694079046.3220477-CDS-S-dermatodea_contig10156:550..751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 551..751 +
1622924142.1314242-CDS-S-dermatodea_contig10156:1167..16371622924142.1314242-CDS-S-dermatodea_contig10156:1167..1637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 1168..1637 +
1694079046.3299-CDS-S-dermatodea_contig10156:1167..16371694079046.3299-CDS-S-dermatodea_contig10156:1167..1637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 1168..1637 +
1622924142.1479645-CDS-S-dermatodea_contig10156:2451..25871622924142.1479645-CDS-S-dermatodea_contig10156:2451..2587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 2452..2587 +
1694079046.339485-CDS-S-dermatodea_contig10156:2451..25871694079046.339485-CDS-S-dermatodea_contig10156:2451..2587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 2452..2587 +
1622924142.1619139-CDS-S-dermatodea_contig10156:3533..36271622924142.1619139-CDS-S-dermatodea_contig10156:3533..3627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 3534..3627 +
1694079046.3475535-CDS-S-dermatodea_contig10156:3533..36271694079046.3475535-CDS-S-dermatodea_contig10156:3533..3627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 3534..3627 +
1622924142.1758962-CDS-S-dermatodea_contig10156:4585..48211622924142.1758962-CDS-S-dermatodea_contig10156:4585..4821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 4586..4821 +
1694079046.3561382-CDS-S-dermatodea_contig10156:4585..48211694079046.3561382-CDS-S-dermatodea_contig10156:4585..4821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10156 4586..4821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10156.115.1prot_S-dermatodea_contig10156.115.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10156 551..4821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10156.115.1

>prot_S-dermatodea_contig10156.115.1 ID=prot_S-dermatodea_contig10156.115.1|Name=mRNA_S-dermatodea_contig10156.115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=379bp
MPSGLACCLAGGEGSPCWGQGAGRGKHRLLRESEEFLEATCGGDVELARC
EYEYGEDGGDDGREGYFGGGENTEEKRPTTAAGKHADEEGAASVREEREC
EGIAPLSTPEHDRDRSLPPASAVGLAATHEARGGNKEEEEEEHKRLNASI
SGGLALGPEQSDETEAIPPREGTSEKTPPFPLVALLALFLFLYVGAEVGF
GAWIAVVVLRDDLAGEAGAALMASLFWGGITVGRLLAVPLAVRFSAGFLV
RANLLGGLLSSMLLLAVGRDGIVWAAVGAAVFGLFMASTFPLAMSLLPSA
GYVVSDKNSSSMVIGGALGEMVVPAFIAALLGPSNAGQPAALYAVCLAVS
MLLIVVYGAWCSLLAAVERRSGQGEGGP*
back to top

mRNA from alignment at S-dermatodea_contig10156:446..5627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10156.115.1 ID=mRNA_S-dermatodea_contig10156.115.1|Name=mRNA_S-dermatodea_contig10156.115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5182bp|location=Sequence derived from alignment at S-dermatodea_contig10156:446..5627+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTCAGGGGCTTCATTTCTCCTTTAGCGCCGGCGCATTAATCACCCCTGC
AGCGGTCGGTCAATTCGGGTACCGAGTGGTCTTCTCGACGTTCGGTTTGC
TCTCGATGCCATCTGGGTTAGCGTGCTGCCTTGCCGGGGGGGAGGGCAGC
CCTTGTTGGGGACAAGGGGCGGGGAGAGGGAAACACCGCCTGTTGAGAGA
GTCGGAGGAGTTTTTGGAAGCGACCTGCGGCGGAGACGTGGAGCTAGCGA
GATGTGAGTATGAATACGGTGAGGATGGTGGTGACGATGGGCGGGAAGGG
TATTTTGTGCGCGTGGGATGGGAATGGGCAGGGCTGTTGTTGGGCCTTGA
CGGGCGGATGGTTCGCGGTGGTGTTGTGTGCTCATTGTAGTGACTGAAAA
TCGAAACTCGAGGCCAGAGAGCTGGTGTTGCTGGCTCGTCGCAGCGATTG
GAATCAAAAATCGCGGCCAGAAAGCGCTGGAGACACCCCGCGATGTGACA
GAATGAGGGGTAAAACCGACCGGCGCAAACCGTTATTTTGAGGCCCAAAG
CTCTGCACAGGCGGTACTCGGTGAAATCAGGGGGTCCAAGAAATGTCTTA
ACCCGAGGTTGCCCGAGGTTTCCCAAGGTTTCCTGCCAAATGGGTGTTAT
TCCGCGGCCAATGCGTCTTGCTCCCGGTCACGTCTGCATTTTACGCGGTG
CGCCGGCGCAGTTGTACGTGAGGGGGGAGGAGAAAACACCGAGGAAAAAC
GACCAACAACAGCCGCCGGAAAGCACGCCGATGAAGAAGGGGCCGCCAGT
GTGCGGGAAGAGCGCGAGTGCGAGGGAATCGCTCCGCTGTCCACCCCAGA
GCACGACAGAGACCGCTCTCTACCTCCGGCTTCAGCGGTTGGTCTCGCCG
CCACACACGAGGCGAGAGGAGGAAACAAGGAGGAAGAGGAAGAAGAGCAC
AAGCGCTTGAACGCTTCGATTTCGGGCGGCTTGGCGCTAGGGCCCGAACA
GTCAGACGAAACGGAAGCGATCCCGCCGCGAGAGGGGACATCCGAAAAGA
CGCCCCCGTTCCCCTTGGTCGCTCTCCTGGCTCTCTTTTTGTTCCTCTAC
GTGGGCGCCGAGGTCGGCTTCGGCGCTTGGATCGCCGTCGTGGTGCTTCG
CGATGATCTGGCGGGGGAGGCGGGCGCGGCTCTCATGGCCAGGTGCGAGA
GGCCACAGAATAGCGATGCGCTCCGGTCTTGACAGCCGTTGGGGGTTGTT
TCCGATCCCGCGAGCCGCGTGCTTTGCGCACCCCACTCGTATCGCTCTCT
TTGGTTCGGATATCTCCATCACATTTTCGCCAGGCTCCCGCTTTTGAGGA
TTTCGGTACTCCTGTGGTGTGAGGGTTTGTACCGGCCCGTAAAACACGTT
TTCATTTTAACACACCCCGGGTGCGTTGGTCCATCTTTTTGTTCTGAACG
GGGGGTTAGGGGGGGGCTAGTACAAGCAAACTCTACGGAGGTTTATGTGG
TCTATGATGATCTGTGGAGGTTTACACCTTGAACGATACCTGTATCATTA
TTGATTATCTCTGTTTTGGCGATATTTGTCCCGCCCGCCCCCCCCCGCCC
GCCTTCGACTTCACTGACATCGCGCGAGACCTGCACTCCCATGTTTATAT
TCGTCGCCTTCGCCTTAACCCCTCGGACAATACTCCAGGCAGCCAGCGGC
CTCGGGTGTGCCTTCCCTTCTCTCACCCCATCCATGCCTCGAATTCCTAT
CGCGCATTGGGTTCAGAAATCCCGCAGCTCGACGATATTCATCGCATTTT
GCTTTCTTGCGCTTTCGTGTTTTCCGCGCGGAATCAGAGAAAATATCTAC
CAATAGCTCTGCGGGGACTCGAACCTATGACTTGCGCAAATAGGGGCGGT
GGTGCCACACGTGCATGGTGCCACCTATTTTATCCGTTGATTTCCTATTT
TTCTTTTTTTCTTTTTCCGACGCGCTCTGGTTTTCGATTCCATTCGACCG
CGCCAGCTTGTTCTGGGGAGGCATCACGGTGGGGAGACTGCTGGCCGTTC
CCCTGGCCGTTCGCTTTTCGGCTGGCTTTCTTGTACGTGCCAACCTACTC
GGCGGCCTTCTGTCATCGATGCTCCTATTGGCCGTCGGCAGGGTGAGAGC
GAAAAGTAAGCTAATGACCAGCACGTCTCCAAGCGGTTTCGCCGCGAGAG
CTTCATGGCCGGGCAAGACTCTGTTATCACGGAGTTCACCGGGTACCTCT
ATTTTTGTGCTTTAGGATAGATGGTGCTGCGGTTGGAAAAGCAGAGATTG
ACCCTGTTGGGACCGAAGTGCGTTTCGCCGACAATCGCCAGGACGGGTAC
AACTATACTGTTACTATACTGTTGCGGTGGCGGGTACACCCATCGATCAG
GTGCACCGTCGCGTGCGAACTGAGTGTGGCAGGGTGTCATTTTCCACCCC
CACTACGGCGGAGCGTAGCGAAACCGTTCGGTCGCTGTCCGATGCGACAT
AAAGTGCGGGCAGATGACCGCGGAAAACGGACTAAGTCCCGAAAGGGGCA
TGAGCTAAGCGCGGGGGTACGTATGGTATGCCATGCTGGTCGTCTTATCG
CCCGCGGAGGAGTTCACGCCGGCGATGATTCCCACAATGCGCTCCCCGTG
TTGCGGTCGAACGAGTTGGCCTTATCTTTGCGAAACCGATAGGTGTGTCT
CGCGCGGAAACCATAACCACGGCTGCACCGTCTCAGCTTAAATTGCCGTC
TCCTGCTCTGTAAAGGAGTGCCGCGTGTTGCGCCGCAACGTCACACCCAG
AAGCGACCCAAACGCATTGCGGGTGGGTGAAATCGTGTTCCGATACCCAC
CGCGCGCCTCGACGCATCTGGTAGGCGCTATGTCGGACGCTCCCTAACGT
GTGTGCGCCGGTAGCAATCACATGTTTTCAGCCTACTGCTGGTAGACCAG
AGGTCGCACACATCCATCAGCAACATATTTCCTGTGCCCACGCACCCCCC
CCCCCCTCCCCGTTCATTTCCATACGGCATGTGTTGACTATACGTACCCC
CCCCCCCCCTCCCGCACCGCTTGTGTACTTGCCGCTAGGATGGGATTGTT
TGGGCAGCGGTTGGGGCTGCAGTGTTTGGGCTTTTCATGGCCTCTACCTT
CCCCCTCGCCATGTCCCTGCTGCCGAGTGCAGGTGAGAGGATTCAATGTG
GCTCATTATCCACGACCTGACGACTGTCGTCTCCCGCGCCCCCCTTTCCC
TGTCTTCTTTCTCACGCTGGACACAGGCAACAACTAGGACAATCGGCCTG
TCGCAAGATAGTATGCACACACTAGGAGCTAAGCCACGCCTCGTGAGGCG
GCTGTATCATGTATTCGCTGCCTGAAGAAACGAAGCGGGGTTTTAGGACG
ACCCGCAAGTTGTCGGTCCTCCGTGTGACCCGCTTCTAGGTTCAAAGATG
ACCGCCAGTCACGCGCGAATCATTCACCATCGGTATTTTACGCAGAGAGT
ACGCCTCCTCCCCCCTCCCCCCGCGCGACACATGCGTGTCTAAAAACAAA
GTAAGCAGTAAAGGGTAATCGTTATAACCCACTTTTTATTTGTTCAAGGC
AGTCCGGCCCGAGTGTCCCAAATCAGAGCTTGAAAAATAGCACAACCTGG
ACAATACTCGATTTCAACACATAAACCTAGCGTTGCCCCCCCCCCGCCCC
CCGCCCCCCGACTATCGAAGTAGATATAATAGGAAAACAAATTCGAACCA
CCTTCGGCAAGGTAGGAAGGAAGGAAGGAACGATTGGCCATCTGCGATCG
ACCCTTTGGGGAAAATTCTCCGTCCTCTCGAGGTCGGGTGGTCAATGGCC
TAACAACTAAGGCATAGAAAACTTGAGTACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCTCATCTGCCTCCCCCTCCCCCGCCAAACAC
CACCACCTCTTGGGGGCGGGGGCTCCCNNNNNNNNNNTGGACTGTACTCA
TTGCCATCTGCTCTCCTCCCTTTGTGTATTTTTTTTTTTTTTTTTGAGTC
GGCGCCCCCCATGACCCCCCCCCCCACCCTCCAACACCTTCTGTCCCCCC
CCCCCCCCCCCCTCCCCCGTCTCCAATCCATGCTTATTAGGGTACGTCGT
CTCGGACAAAAATTCCTCGAGCATGGTGATCGGCGGCGCCCTCGGAGAGA
TGGTTGTACCGGCCTTCATCGCCGCGCTTCTTGGCCCCAGCAACGCGGGG
CAGCCGGCGGCGCTTTATGCCGTGTGCTTGGCGGTGTCGATGTTGCTTAT
CGTTGTGTATGGCGCGTGGTGCAGCCTACTCGCGGCGGTCGAGAGACGGT
CAGGGCAAGGAGAGGGTGGACCATAAGTGTGCCGTGGCTGAATTTATTTG
CATGGTGTTGTGTGGAGGCGAGTGGCGGCGTTCCATTATTTTATTATTTT
GGTATTCCTGTTGAGTAACCGTTGTTTATTGTCACTTGCTTGTCGATGCG
TTCATCATCGTTCTGTTGATTGATTGATTGATTGATTGATTAATTGATTG
GTTGATTGATGAGTAAGTTTATATACGAATATAGTTAACTCGTTGTATAG
CCGATCGGCTCAGTCCGACTCGGTTTGGTTTGACTCCATCATTTTGTGGT
CAGACGCGGGTGCAACTACTTTAAAAGGAAAAACTGAAGGAGAAACACGT
TAAGTTTATATAGGTATGTGTGCCTTGTTAGCAGTGATCATTCAGTGCAA
CATTTGGTTGTTGTATACACAGTACCGATACTATACTGCATTCCGAAATT
GTTTTTATCAAGAGTGACTGGTTTTAGTCGGGGGAGAGAAGAGCCATCAC
CTCAACTACCGACGCCCCACAGGGCCACACCCTTGGACCGGCACTGTTCT
GCTTGCCACTGGGATCGGCAAATGGAGAAGACGAGGGCAATAAGAGAGAC
AAAGGGTGTTGTACTCGAACTCTTCGCCTACATGGATGACCTGCGGATGG
GGCTGCGGGAGCCAAAACCCCAAACCGTTCAAACGGTTCCTTTCCTCCAG
GAAGAGTGAAGCTCGATCGGAGTGGTATTCAACGGAGCGAAGTACGTGGC
TCTGCCGCCGCTAGGGCATATCCCTACAGAAGGTGACCTAGCCCTGCTAC
GAAGCGTGGGGGTGAGAGCTGCCCACGGGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10156:446..5627+

>mRNA_S-dermatodea_contig10156.115.1 ID=mRNA_S-dermatodea_contig10156.115.1|Name=mRNA_S-dermatodea_contig10156.115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at S-dermatodea_contig10156:446..5627+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCATCTGGGTTAGCGTGCTGCCTTGCCGGGGGGGAGGGCAGCCCTTG
TTGGGGACAAGGGGCGGGGAGAGGGAAACACCGCCTGTTGAGAGAGTCGG
AGGAGTTTTTGGAAGCGACCTGCGGCGGAGACGTGGAGCTAGCGAGATGT
GAGTATGAATACGGTGAGGATGGTGGTGACGATGGGCGGGAAGGGTATTT
TATGCCATCTGGGTTAGCGTGCTGCCTTGCCGGGGGGGAGGGCAGCCCTT
GTTGGGGACAAGGGGCGGGGAGAGGGAAACACCGCCTGTTGAGAGAGTCG
GAGGAGTTTTTGGAAGCGACCTGCGGCGGAGACGTGGAGCTAGCGAGATG
TGAGTATGAATACGGTGAGGATGGTGGTGACGATGGGCGGGAAGGGTATT
TTGGGGGAGGAGAAAACACCGAGGAAAAACGACCAACAACAGCCGCCGGA
AAGCACGCCGATGAAGAAGGGGCCGCCAGTGTGCGGGAAGAGCGCGAGTG
CGAGGGAATCGCTCCGCTGTCCACCCCAGAGCACGACAGAGACCGCTCTC
TACCTCCGGCTTCAGCGGTTGGTCTCGCCGCCACACACGAGGCGAGAGGA
GGAAACAAGGAGGAAGAGGAAGAAGAGCACAAGCGCTTGAACGCTTCGAT
TTCGGGCGGCTTGGCGCTAGGGCCCGAACAGTCAGACGAAACGGAAGCGA
TCCCGCCGCGAGAGGGGACATCCGAAAAGACGCCCCCGTTCCCCTTGGTC
GCTCTCCTGGCTCTCTTTTTGTTCCTCTACGTGGGCGCCGAGGTCGGCTT
CGGCGCTTGGATCGCCGTCGTGGTGCTTCGCGATGATCTGGCGGGGGAGG
CGGGCGCGGCTCTCATGGCCAGGGGGGAGGAGAAAACACCGAGGAAAAAC
GACCAACAACAGCCGCCGGAAAGCACGCCGATGAAGAAGGGGCCGCCAGT
GTGCGGGAAGAGCGCGAGTGCGAGGGAATCGCTCCGCTGTCCACCCCAGA
GCACGACAGAGACCGCTCTCTACCTCCGGCTTCAGCGGTTGGTCTCGCCG
CCACACACGAGGCGAGAGGAGGAAACAAGGAGGAAGAGGAAGAAGAGCAC
AAGCGCTTGAACGCTTCGATTTCGGGCGGCTTGGCGCTAGGGCCCGAACA
GTCAGACGAAACGGAAGCGATCCCGCCGCGAGAGGGGACATCCGAAAAGA
CGCCCCCGTTCCCCTTGGTCGCTCTCCTGGCTCTCTTTTTGTTCCTCTAC
GTGGGCGCCGAGGTCGGCTTCGGCGCTTGGATCGCCGTCGTGGTGCTTCG
CGATGATCTGGCGGGGGAGGCGGGCGCGGCTCTCATGGCCAGCTTGTTCT
GGGGAGGCATCACGGTGGGGAGACTGCTGGCCGTTCCCCTGGCCGTTCGC
TTTTCGGCTGGCTTTCTTGTACGTGCCAACCTACTCGGCGGCCTTCTGTC
ATCGATGCTCCTATTGGCCGTCGGCAGGCTTGTTCTGGGGAGGCATCACG
GTGGGGAGACTGCTGGCCGTTCCCCTGGCCGTTCGCTTTTCGGCTGGCTT
TCTTGTACGTGCCAACCTACTCGGCGGCCTTCTGTCATCGATGCTCCTAT
TGGCCGTCGGCAGGGATGGGATTGTTTGGGCAGCGGTTGGGGCTGCAGTG
TTTGGGCTTTTCATGGCCTCTACCTTCCCCCTCGCCATGTCCCTGCTGCC
GAGTGCAGGATGGGATTGTTTGGGCAGCGGTTGGGGCTGCAGTGTTTGGG
CTTTTCATGGCCTCTACCTTCCCCCTCGCCATGTCCCTGCTGCCGAGTGC
AGGGTACGTCGTCTCGGACAAAAATTCCTCGAGCATGGTGATCGGCGGCG
CCCTCGGAGAGATGGTTGTACCGGCCTTCATCGCCGCGCTTCTTGGCCCC
AGCAACGCGGGGCAGCCGGCGGCGCTTTATGCCGTGTGCTTGGCGGTGTC
GATGTTGCTTATCGTTGTGTATGGCGCGTGGTGCAGCCTACTCGCGGCGG
TCGAGAGACGGTCAGGGCAAGGAGAGGGTGGACCATAAGGTACGTCGTCT
CGGACAAAAATTCCTCGAGCATGGTGATCGGCGGCGCCCTCGGAGAGATG
GTTGTACCGGCCTTCATCGCCGCGCTTCTTGGCCCCAGCAACGCGGGGCA
GCCGGCGGCGCTTTATGCCGTGTGCTTGGCGGTGTCGATGTTGCTTATCG
TTGTGTATGGCGCGTGGTGCAGCCTACTCGCGGCGGTCGAGAGACGGTCA
GGGCAAGGAGAGGGTGGACCATAA
back to top