mRNA_S-dermatodea_contig10153.114.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10153.114.1
Unique NamemRNA_S-dermatodea_contig10153.114.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10153.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10153contigS-dermatodea_contig10153:874..2037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.0497837-CDS-S-dermatodea_contig10153:873..9801622924142.0497837-CDS-S-dermatodea_contig10153:873..980Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10153 874..980 +
1694079046.2956917-CDS-S-dermatodea_contig10153:873..9801694079046.2956917-CDS-S-dermatodea_contig10153:873..980Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10153 874..980 +
1622924142.058531-CDS-S-dermatodea_contig10153:1811..20371622924142.058531-CDS-S-dermatodea_contig10153:1811..2037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10153 1812..2037 +
1694079046.3033848-CDS-S-dermatodea_contig10153:1811..20371694079046.3033848-CDS-S-dermatodea_contig10153:1811..2037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10153 1812..2037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10153.114.1prot_S-dermatodea_contig10153.114.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10153 874..2037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10153.114.1

>prot_S-dermatodea_contig10153.114.1 ID=prot_S-dermatodea_contig10153.114.1|Name=mRNA_S-dermatodea_contig10153.114.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
WHPHLAKINRRHKRAPQTVVWSTAVTGTLRSYRPPSKRTPPAGAPVMNYR
QGREGRHPPHLGAASPCLQPERLQLCRWFHLRNRLHLRGGSPFLKPERLK
LSRRWYLMPS*
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mRNA from alignment at S-dermatodea_contig10153:874..2037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10153.114.1 ID=mRNA_S-dermatodea_contig10153.114.1|Name=mRNA_S-dermatodea_contig10153.114.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig10153:874..2037+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCATCCACACTTGGCGAAGATCAATCGCCGACACAAGAGGGCTCCACA
AACCGTGGTCTGGAGTACAGCAGTGACGGGGACTTTGAGATCCTACCGAC
CCCCAAGGTGTGAGGTACTGCTGTAGGTAGTATGTCTGTTCTTCTTGGCA
ACTTCCTATGATACGGGAATTTGATAAGAGCTTCGACCGACGTGGTACTG
CTGCGACGCAAGACTTCGAAGAGCGCGGCGTGCTTCAAGTAACCGAGTAG
CTGGTACCCTTATAGTAAACTTGGCCCGTCGTAGGTGCGCATGTACAGTA
TTCGACTTGTCCGCGCATAAATAGTAAGGTGGGTGAGAAGAAAAAACCTG
CACATAAAAAGTTGGCTTTCGTCTGATCAACAAGCACTTGAAAAGCAACG
GTAAGAACCCTAGCGTACGTGTTTTGTTTGTTTTGGCACACATATGACAG
ACGTTATTTTCCGAGGTCCATCTGTGGTCACAAGGGATCATCCCATCTCT
CCCCGGCTTTCATCTTTTATTTTTATCGCGCATTGGGTTCGGTACTCCCG
CAGCTCGCCGATTTCTCCGAAAATTGCTCACTCACGCTCTCACGCTTTCC
ACGGCGGAGGTACGTAGAGATAATAAATATGTATCGACTCTGCCGGGATT
CGAACCCCGGTCCTCCGCTCACTGGGCTGTTGGTCACCAGTTTAACCACG
GGGCGCGCGGTAACTTTGCCAAGGAAATATCTACCGCCATTCATCATGGC
AACAGGCTTACCGTGAAATTAGCAAACACCTCTGATGGAATTGGTTCGCT
GCCGTCCTTCCTTTCGGGAGCGTGCGTTCTGTCGGCATGAACATTGATTG
CGCCAGCGGTAACTTGACTTGCACCCCCCCCTAACGCCCCCCCCCCACTC
CGCTCTTCCCTTGGGCCCACGTTGCACGCCATGCAAAGCAAACGAACGCC
ACCGGCGGGCGCTCCAGTCATGAACTATCGGCAGGGTCGAGAGGGTCGGC
ACCCACCGCATCTGGGGGCAGCATCTCCCTGCCTCCAACCGGAACGCCTA
CAGCTATGCCGGTGGTTTCATCTGCGAAACCGGCTGCATTTGCGGGGAGG
ATCTCCATTCCTCAAGCCGGAACGCCTAAAGCTAAGCCGGCGGTGGTACC
TGATGCCGTCTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10153:874..2037+

>mRNA_S-dermatodea_contig10153.114.1 ID=mRNA_S-dermatodea_contig10153.114.1|Name=mRNA_S-dermatodea_contig10153.114.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig10153:874..2037+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCATCCACACTTGGCGAAGATCAATCGCCGACACAAGAGGGCTCCACA
AACCGTGGTCTGGAGTACAGCAGTGACGGGGACTTTGAGATCCTACCGAC
CCCCAAGTGGCATCCACACTTGGCGAAGATCAATCGCCGACACAAGAGGG
CTCCACAAACCGTGGTCTGGAGTACAGCAGTGACGGGGACTTTGAGATCC
TACCGACCCCCAAGCAAACGAACGCCACCGGCGGGCGCTCCAGTCATGAA
CTATCGGCAGGGTCGAGAGGGTCGGCACCCACCGCATCTGGGGGCAGCAT
CTCCCTGCCTCCAACCGGAACGCCTACAGCTATGCCGGTGGTTTCATCTG
CGAAACCGGCTGCATTTGCGGGGAGGATCTCCATTCCTCAAGCCGGAACG
CCTAAAGCTAAGCCGGCGGTGGTACCTGATGCCGTCTTGACAAACGAACG
CCACCGGCGGGCGCTCCAGTCATGAACTATCGGCAGGGTCGAGAGGGTCG
GCACCCACCGCATCTGGGGGCAGCATCTCCCTGCCTCCAACCGGAACGCC
TACAGCTATGCCGGTGGTTTCATCTGCGAAACCGGCTGCATTTGCGGGGA
GGATCTCCATTCCTCAAGCCGGAACGCCTAAAGCTAAGCCGGCGGTGGTA
CCTGATGCCGTCTTGA
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