mRNA_S-dermatodea_contig1015.113.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1015.113.1
Unique NamemRNA_S-dermatodea_contig1015.113.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1015.113.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.720e-6
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 2
Query:    5 KTEFCSEHQRPGMVDVRSKLCAYHGCPKRPSYGRVGSR 118
            + EFCS+H +PGM++VR K C + GC K+PS+G  GS+
Sbjct:    2 RPEFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1015.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSL8_ECTSI2.720e-652.63EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1015contigS-dermatodea_contig1015:4803..14394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1686
Cds size1338
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.9282608-UTR-S-dermatodea_contig1015:4802..51101622924141.9282608-UTR-S-dermatodea_contig1015:4802..5110Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1015 4803..5110 -
1694079046.2079103-UTR-S-dermatodea_contig1015:4802..51101694079046.2079103-UTR-S-dermatodea_contig1015:4802..5110Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1015 4803..5110 -
1622924142.017248-UTR-S-dermatodea_contig1015:14354..143941622924142.017248-UTR-S-dermatodea_contig1015:14354..14394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1015 14355..14394 -
1694079046.2881215-UTR-S-dermatodea_contig1015:14354..143941694079046.2881215-UTR-S-dermatodea_contig1015:14354..14394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1015 14355..14394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.9419627-CDS-S-dermatodea_contig1015:5110..53441622924141.9419627-CDS-S-dermatodea_contig1015:5110..5344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 5111..5344 -
1694079046.217692-CDS-S-dermatodea_contig1015:5110..53441694079046.217692-CDS-S-dermatodea_contig1015:5110..5344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 5111..5344 -
1622924141.9522529-CDS-S-dermatodea_contig1015:5686..58001622924141.9522529-CDS-S-dermatodea_contig1015:5686..5800Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 5687..5800 -
1694079046.2310798-CDS-S-dermatodea_contig1015:5686..58001694079046.2310798-CDS-S-dermatodea_contig1015:5686..5800Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 5687..5800 -
1622924141.9640872-CDS-S-dermatodea_contig1015:8391..88191622924141.9640872-CDS-S-dermatodea_contig1015:8391..8819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 8392..8819 -
1694079046.242298-CDS-S-dermatodea_contig1015:8391..88191694079046.242298-CDS-S-dermatodea_contig1015:8391..8819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 8392..8819 -
1622924141.971863-CDS-S-dermatodea_contig1015:9559..96501622924141.971863-CDS-S-dermatodea_contig1015:9559..9650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 9560..9650 -
1694079046.2524056-CDS-S-dermatodea_contig1015:9559..96501694079046.2524056-CDS-S-dermatodea_contig1015:9559..9650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 9560..9650 -
1622924141.9825506-CDS-S-dermatodea_contig1015:10829..109221622924141.9825506-CDS-S-dermatodea_contig1015:10829..10922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 10830..10922 -
1694079046.2662604-CDS-S-dermatodea_contig1015:10829..109221694079046.2662604-CDS-S-dermatodea_contig1015:10829..10922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 10830..10922 -
1622924141.9983113-CDS-S-dermatodea_contig1015:13680..138201622924141.9983113-CDS-S-dermatodea_contig1015:13680..13820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 13681..13820 -
1694079046.273508-CDS-S-dermatodea_contig1015:13680..138201694079046.273508-CDS-S-dermatodea_contig1015:13680..13820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 13681..13820 -
1622924142.009186-CDS-S-dermatodea_contig1015:14116..143541622924142.009186-CDS-S-dermatodea_contig1015:14116..14354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 14117..14354 -
1694079046.2808416-CDS-S-dermatodea_contig1015:14116..143541694079046.2808416-CDS-S-dermatodea_contig1015:14116..14354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1015 14117..14354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1015.113.1prot_S-dermatodea_contig1015.113.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1015 5111..14354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1015.113.1

>prot_S-dermatodea_contig1015.113.1 ID=prot_S-dermatodea_contig1015.113.1|Name=mRNA_S-dermatodea_contig1015.113.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=446bp
MVDVRSKLCAYHGCPKRPSYGRVGSRKTKFCSEHNGAGMVDGSTTRCASE
GCVKFAVYGPDSSRRQGLLCSRHFTEGRQAGPSAVEAGKAREKATETDED
SGGQLSLPNTLKRALRADRFPRQVTKTPGSVDCCPSRGKRMRVFEREKGG
VSLEAQQVSAFVTESSPTASPHEFTPLASQGRSDQSRATQNVGRDDRATS
RARRHSMRFGCGKDGVCDLPPDSCVATANPAELTPTQGVVRTNTGEREFT
DSTGTTRSGNSLLGCGGGGEQVEAGDGRAMIKPHCAGAERDVSTTFSQSR
RHTRASCTFVREDRCKSASLEQEKREAFVELEVQVAFDAKIYSKVEANSK
SLGHRMKSVIGGPGTADQAQTTESVNGKSPGPVDMLVEEGEMDGKLALCE
LKNEGAAKGGVSPLRGLDVTTVAIKLEGSEARALVTSFESFGWQR*
back to top

mRNA from alignment at S-dermatodea_contig1015:4803..14394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1015.113.1 ID=mRNA_S-dermatodea_contig1015.113.1|Name=mRNA_S-dermatodea_contig1015.113.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=9592bp|location=Sequence derived from alignment at S-dermatodea_contig1015:4803..14394- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAAGACGGAGTTCTGCAGCGAACACCAGAGGCCGGGTATGGTGGACG TCCGTAGCAAACTCTGCGCCTACCATGGATGTCCTAAGCGGCCATCGTAT GGCAGGGTTGGCAGCAGGAAAACGAAGTTCTGCAGCGAACACAATGGGGC GGGTATGGTTGATGGTTCGACAACAAGGTGCGCCAGTGAGGGTTGCGTCA AGTTCGCGGTGTACGGTCCAGATAGCAGCAGACGACAAGGGTTGCTTTGC TCTCGACACTTCACGGAGGGCCGTCAAGGTCAGCATGTAGATGTACACAC TTCATATTCCAATGTATTCCAGTGTTAGTTGTAATGTGATTGTGTGCCAA TGCATATCAAACACCGGCTTTTTGAGTTCGGTATATCAGCGGGAATTCTA TGGTGTATTGTTGCCGGAAACGATCACGACCCGCGAATGGCCACTGACTG TTTGGGTGTCACAAAATCCGTTTTTTCCAGAGTGTCCCCACGATCCCACT TGTTGACAGTGGACAGTTTCCTGTTTTGAGACGAATCTACTCGCTTATTT CACAATTGTGACTTTACTGTGCAGCTGGACCTTCAGCTGTTGAGGCAGGA AAGGCAAGGGAGAAGGCCACGGAGACGGACGAGGATTCTGGTGGGCAACT TTCTCTCCCGAATACATTGAAGCGGGCACTGAGGGCTGATCGATTCCCAC GGCAAGTGACGAAGGTGTGTGCGCTGCTTTCATTGGAGCGGTACCGTGGT GTACGTAGTTGTAGTGCCGGCGAGATAGGAAATAGGGACGACTCCAGCTA TTGCCTGGCCCATACGTGTTTACTTGCGAAAGCTTCGATATTCTTATGAT ATAATACAAGAGTCAACAATATTTTATACCAGTACACTCCACCCCGCTAT TCATAGCGATTAATATACTTCTATTTTGAAGTAGTGTCAACTGAAGCCCG CTATTCACAGAGAGTTATAGGGTCCCATATTCAAGTTGTTCCAACTGAGG CCCGATTGTCCTTATACAGAGTTACAGTATTTGTCTACTCATTTTTTCGC CTCGGCCGCGGGCGGGTCGGCCGCCGCGGTCGGCCGCGGCCTCTATCGAG CGTTTCCTATAGCACCCACGTTCCCCCCGCCGCCACGCCGCCGAGGCAGT CGCCAGCACAACGCAAACATATGCCACGGGCCCCAGACAGCGCCGCAAAC ATGTAGGCTGTGACATTGTTCATAGTGATTATAGTGTGGCGACCGGTGGA TCCATCCATATACGATTTGCTGGCAGACAGTTGAGCACCGTCCTCGCCCT CGGCGCGCCGTCGTTTGTGGGCCCCTCGATCGCTTGGCGGTCGCCCGGTC GCTCGGTCGCGCGGTCGCTTGGCCTAGCGCCCACATTTCCTCCGCCACCC CTGCCGCCGACGCCACAGGCAGCTGCAAGCAACGCAAACAAGCAGCTGCC AGCGCTACGTAGAAGAAATTCATTTTTAAACACTAGATTTTCGTCTTGAG CCAAGCGACTTGAAGTTTGCATCATGCATGAGGTATGAGTAGGTGGTATG TCACGTATAATATTGAATACTTGATGGATGGATTGATTTGCGCACCTTGC GTGGTCTCCTCCAATGTTGAATAACTACTCTGTCGGGTATCATGATTTAG CATGTATTATCATTACGCATGTCAGATACAAATATACGGCTTTCCCTACA CCTGCCGTGGGTCGCCACACCGTATCCTCTAAACCCAACCAACATTTGAA CGTCTTCCCAAGGCACACGGTACCTATATACGAAGTATGCCGTATGATTG CATGATATATCAGATAAAATTTACGGCTTTCATCACGCCTGCGCTGGGTC GCCACGCCGTATCTTCCAAACCCAACCTCACATCGTCCTGCCAACGCACA CCTCACCGGCGACAGCCGTGTCTTGCAACTAGCGTGGATTAAACAGAGAA CCGAGCAACCAGCTGTCAGAATGACCCGCACGTTGTAAATAAGTCGCAGA ACCCCTGAAGCTCCCCCCGCATATATAAATTACTGAACGTACAGGACTTG ATAGTACTAGCGCTCTTTTTTGTTCCCATCGGCGAGCTACGGACATAGGC CAGCGTGAGCGATTGTGACCCTCCGTATTTTGCAATCGCTAGGAGCATAT GTGTTCTCTGTGGAGAATTGATACTCTGCGTGGCTTAATGCTGATGCCGA GAGCTGTTTTGTATTTTCTTCGGCAACGACAACATATACGTGTTGGCCGC AATCCCTACTGAAGCGAAAAGGGGGTATTTTAGTACGCTGTCCGACGTAC TTATTGCCTCCCATGACTCCCTGGCACCTTGGAGTTTTTTCCTTCGCTGC GTTGAGCTATGTCTTGACACGTTTTCTGAACATTGGAATGGAGAATTTGA GAAATGCCGTGCTGGAACGTTTAGGGTATCGTGGTTGACACAATTGAGGT CCCAACTTTTCAACAATCTCTTAACGTGGATATGCGATGCTAAGGTGACC ACCATCGCCTCCACATAACGTACTGAATTTCACACGCCGAGCGCGTCAGG GTTTTGTTGGTATCGGCCGAAGGTTTACTTCCAACCCATGCAATAGGTTG CCGCCTCCGATTTGAGCATCGACAACACCGGTTAAGTAGTTTCCTTCTAC AGCCAAAGGGTTGTACTTCCGGACGTTTGGAAGTTAACTAAACTTACGGT TTGGGGAAGTTTGTCGTCCTGCCTACAAGGACTTGCACGGGTAGTAATTG TCTTTGAGAGGGGGACGCCGTGCTTTCTAAATTCGCGCTCGCGGTGCCGC TGCCACCATAAGTCACGGTTTGACGGATCTCTGACGCGAAATATTCGTTT TCACGATGAGCATTGCGCAAATGACTTAGACAATTAGTAGATATTGTTTG GTGAAGAGGGAGTCACTTCAACTTAGACTTCCACACACCACGCTTCAATC AGCAGCAACAGCAGTAGTAGCGGCCATTTACCGCACCGTGACGTGGTCAT CTTCCACAAGCTGTCAGGTATTCGTTTGAACTTAACGTAGCGAAAGGTTT CCAGTGCAAAATACCCACATTTAGAGACAGGGTGACGTTGTGCAATTCCT ACTAAAGCGCACCTGGCAGATTGCCTTGGTCGGCATCCTCCCGTAAAGAC CTGCGGCAGGCGTTTGGAGCTATTTTCCGCCTTGTTGGCCTACCACATAC CAGGTACCAGTAGTGTTTCCTCCATAGACTGCGTGTTTTTCATACTGAAG CCTTTTGCGCAGGTCGCATCCGTGTCGTCATGAGCTGTCGGGCTTTTGTA TTGCTGCCCAATAACGTATACAGCAACACCTGTTGTGGTCGAAAACTTTG TAGCTCTCCTTGACCTTCACTGCAAACAATGAAGCTGTTTATTTTGTATC TCAAGTCGAACCTATGGACTATTTTTCGTGTTTGGTGAAACCTACTGACA AACTCTACGAACGTCTCGACAGACACCCGGAAGCGTGGATTGTTGTCCTT CAAGAGGGAAGCGGATGCGAGTTTTTGAAAGAGAGAAGGGCGGCGTATCG CTAGAGGCACAGCAGGTATGTATCGGTCATAAAGGGCACGATGATATTAT GCTTTGTAAGACTCATACTGTTGCTCCAAGGGATCCCGAACACACAGCCG TTGGTCATTCTACTTTGTGTTGGTTCTCGCAGCAGGTGCAGAACGTCGAG TACACCACCTGACGGCACACCCAAGCTTAGTCCGTTTATACTGCAGGCGA GAAACCATCTCGAGTTAGAACTCTTACCGAACGTATGAATCTCAAATGCC GATGGTAGTTCTTACATTTGTATTGTTTTTGTCGGATACGTCACCAAGGT TGAGATTGTGTTACTTTTAATCTCGCCCCCCACAACCTCAGCTAGATGGC GAAAGGGTGACTAGTCATTACCCTAGGCCGTTACCATGTGACAAGGTCTC GCCCTGCCCAGACTCTGACGCTCAGCCGGCCAAAGACTAAGCGCCCGCCC CGGTCTGACCGGTGCCGATGTCACATGCGAAACAAGGTGATACTTTTCGT TACTCGCGTATGCACTACTCTGTTCCTGGTCTCGGCTATCGCGTTTTCAG CTCGCCGTCACCAGTATCTAGCATATTGGACACCCTCCGAACACATCCAC CGTGATTCCTCATGTACTCACCTTATGAGCGCCATACATCTATCTGCCTT GTTTCTGCATAATGTCCGAGTCTGCATCGCCCACACGGAGATGGGTCAAA CCTCCGCGTGGGGTTCTTCAATCGTGATGAGTACCGCAGCAAACCTCGGG AAGGCGTGTTATGGGCAGCCTCCTGCGTCATGCCCCCCCCGCTCTCGTAA ATTTCCAATCGGCCAAGAAGGGTGCCCTGTACAACACCTCGTGCTCATCT GTATTTACTACTACTCCAGAACTGTCTTAGCGGTAACATGCTTGAGGTCC AGCTTTTGTATTGCTCAGACCGTTCATCGATCAACTTTACATTGAAAAAA CCTTCATCAGTAATTGGTCTTGTAGGGTCCTCTAGTAGAGCTCTCCTTAG AAAAGTAGATAATTTCTCCACAGCAGGTTTCAGGATGAAATTAGCTCAAC CTCACACGAGATCGACCGATTGCCGGGGTGCCGTTCCCCGTAACAAGCAG ACGTGCCGTGTTATTTGCACGCGACGGTACAATGGTTTTCCATACGTGTC GCCAATGTCCAAACCGCGATTTACATGCACGTCATTCGTTGCAGGTCTCA GCATTTGTCACGGAATCGTCTCCAACGGCGTCTCCCCATGAATTCACGCC ACTCGCATCACAGGGCAGGAGCGATCAATCCCGAGGTGCCTACCTTTGCG AGGCCAGTACAAAGACCTTTTGACTGCGTGCGTTGGCATGCGTTTCATTT AGCATAGTAGTGTTTATTTGGGGTTCCCGTTCTCCGGCAGTGTAGTCGCT GAGGTTAGGCGGCCTTGCTACTCGCTTCCCGGATATGTTTGTGATGTCGT ACAGGCGTTGCGCGTGTGAAACTGCTGCTGGTGTGCTATTGCTGCTAACG AAGTATCATTTTGCCGAAGTTGCCTGTCTGTTCTGATGTTGCTGTTGTTA TCACCCTCTTGGTACATCTGCCACTTACTCTATACTCCAGTAGTTTCATT TGTAAGTGCTCGCAGGAACCATGTCTTGGAGGCAGGCATCGGTTCGAGTG TAAAATGTATTTCTCGTGTAGCTGTTCTCCGCTCATTACGACTAGAGTCA AACTAGGTAAATTGGTTGTTCAGTGTAAGTATATTTTTTCCTCACTTATC AATGCTCTAGATCGTTCATAAACGTGTAGTCGTGGAGGTGCCAACATGTC GTGCTACTGGTCTACGCTTTAATGATACTTGTGGCGGTGAGTGAAAGAAG CAGGCGCTACTTGTTGCAGACCATACCGGGCCTTCAAGCACAGGTATACA TCTACCTGTGATTACGCCACTACCCCAGAAGCCCCAACTACTGCAAACGT TTCGAATCCATTCTTGCTGTGATAAACGAACTATTTTCCGCGCCCACGTT TGAACCTACCGCTCTCACGATTCAGCAACGCAGAACGTTGGTCGAGACGA CAGGGCCACGTCGCGAGCACGCAGACATTCGATGCGGTTCGGATGCGGGA AGGACGGTGTATGTGATCTCCCACCCGACTCATGTGTGGCAACAGCGAAT CCAGCAGAACTGACGCCTACGCAAGGCGTCGTACGGACCAACACAGGAGA GCGAGAGTTCACTGACTCCACAGGAACCACGAGGTCGGGGAACAGTCTCC TAGGATGTGGTGGTGGTGGCGAGCAGGTTGAAGCCGGGGACGGACGCGCT ATGATCAAACCCCATTGTGCAGGCGCTGAAAGAGATGTCTCCACTACCTT TAGCCAGAGCCGCCGCCATACCCGCGCATCTTGTACCTTCGTCCGTGAGG ACCGGTGCAAGAGTGCATCATTGGAGCAAGAAAAACGAGAGGCGTTTGTC GAGGTGTGTGGGGGGAATAATTGTTGATGGGCGGGGAACACGTCATCTTG TCGATTTGCAGGGTTGGGTGCTAGACCATTTCGTACTGGCAGTATACTGG TATTGGTTAATAGCGAAGAACTGGCCCAAGGGGGCTGCCAGTACCAGTAT CATGCACTGCATACGTACGACCTATATAACACCTCACTATTCAATTAAAA CCCGTCGAATTGCGCCACGCCGTGTTGAGAGAGAGAGAGAGAGCGCACAC ACACGCACACACCCCTAGGAAACAACTGCTCAATGTATGTTTCCCAGCGA CTTCGGAGCTAATAGTCACCGCACGTTGTCTGGTGTGTACTTGCAGTACA GAGGCTGTTAGATATCGTGTTCAACCTTCGTTCTCTAGTTTGTGCCTCTC CACATGGTCCAAAATCACTACCTATGTATTGTCTCGGGAAGCCAAATCGC GATAACACTTGCCTCTAGCGGACCCCTCCGGAGGCTCCTCGTCCTGGGTG CGGCTTCCCGGTGACCACGTTACAATTAGGTCGAATTTATTGTCTGCTGA CGAAGCCACTACTCAAAATATTTTCTGGCTGCGCCAGTACCAAGCCCTAC GATTTTCATTCATCTCTTCTGCGCTAGATGGTTGAACGGTACTCTGTATT GTAGAAGAAGTATTTGTAAATCAGGTGTATTTTGTTTTCCTTTACTCTGG GCACATCTGGCCATAACGCGAGTGCAATTTAGATAATCGGGTATAGGTGT GCAAAGCAATCAATCAGGCAATCGAATCCATACAGGGCATGGAATTGCTG GCGTTAAACCGGAGAAAAAAGTGAGTATTTTAGCTGGGGAATATAATCAT CGGTGGCACACATGGTGGCCTCGGCCTGGGGAGTGGACCCCACGATCGAT GGCTCAGTCATGAAGAAACATGTTATTGCAAACCATTGGTCGTTTTGGGG ATCTCGTTATGTTGTGTTATCCCACGCTCGTCTCTACTAAGACTCTCTCA CGTGTGATATGTGTCTACGGTACCTGGAAAAGTATTTTTCCGACAGTCAA CACGATTACCGTGGGATTCAAGTTCTTTGCGAGCGCTACTTTCTGCGCGG GCGCTATGTGTAGGTGTCGCAGTGTCAATACACTACACCACGCATTGCGT TTATATTTACGAGGGAGGGGAATATCAAATGTTGTACCTAGTCTACGGCA TAGATTAACTCGTCTCGATTCCTAGTCCTACCCCAGGGATTTTTTTTATA TTATTACCATGGTTAGCATCCTAGTCGCTGATGTAATTTGCGTGTTTCAT TTCGTGCCTATGTTCTTCCTTTTCCCCTCAACTCCATCAGTTAGAGCCCT TACCCTGAGGAAGGTTTAATCTAGTTTATGGACCACGCGCAGGTAGTTCT GTTTCACCGGAGGTTTCTGTGTATTTGTGTGGATATGCCTTGCACACAAT ACAAAGGTAACTTAACATTTTGCTTCTGTACATATCCCGAGAATAGGCCT TTCCCCCATTTGACAGGACAATAATGTGTGGGGACATTACCAAAAGTACT TTCGAGCAAAAATTGGAAACAGTGATATTGCACGAATATTTGTTGGTCGC CTACCATAAACTACGAAATATACACCGGCGATAATACGCAAAGAGGTTTA CTGCGTCACGTGCAGCACACGTACACGTACCACCACGCGGCTGTGTCAGG CAACGGCGATGAATTATAGTGACATATGCAACAGGTGGCTCAAGCGTTGG TCGCGTTGCGGGTCTCAATGTATTGATCGATGCACCAGCAGCGTTGTCGC TACTGCGGCAACACGCCACCATACCTACTGTCGCGTCGGCTTGTTGATCT TTTGCGTAATTATCTCTCGCGGACATGAAAATATCCTGTTGGCGACGAAG CGCGCCCGCACCGGTCGAGCTTGGAATAAGCACGAAGGTTCGACGCGGTC GAAAAATGTCCACATACCCGGGATGGGGGACCCGCCCTCTATATCGAATC CAAGTCTCCGAAGCAACCGCTGGCTTTGGTTCCCGCCACTCCTTTTCATT TTTTCGCCTCTCTACTTAGAGCTCAGCGTCCTTGAATGCGTGGCGGGGTG CGCTATCTCGCTTGGGATAGGTAGCACGTATCTCTCAAGCAGGCACCAGC CAAACAGCTGCAACCTTGTATTTGTCCTCTTCGGACATACCTTGCCCGAG AGAAACAATCTACATGCGTTTCCCTCCTGAGACATACTTGCATGCTCAGA TGTTTGTTCCCCCCCTACAAAATGTGGTCGTACAGTGTGTGCCCAGACAC GATGCAGGTCGCATGCCGCGGATCATAACTGACGCTCCGAGTTATTTAGG CGTAAGGGGTGATGTTGCACGCGAACAAGATAATCCCGATTCTTCCGTGG GGTTCCCAAACCAGTGCTGCGTGTGGGGGCTCTCTGTTGGCTTCTACAAC AAAACAAGATGTCGCCCACATTAGAAAGGTACATCGTGTCGTGTTATCGT ATGATTTTCGCAGGGCTGACACAACGTCTTGGGCATTGGCTTCACTCCGC ACTTATCGCTGACACCGCTTTCTGCGTTTCCTGTTGACATGAAGCTCGAG GTGCAGGTGGCTTTCGATGCGAAGATTTATTCCAAGGTAGAGGCAAACTC GAAGTCCTTAGGGCATCGGATGAAGAGTGTCATAGGTGGACCCGGTACAG CAGATCAGGCAAGTTTCTTGGTACGCGATGCGTGTATGTAGTTTTGATGA GCGAATTGGAATGTTTCTAGTGTTGTTGGAATGGTACCAACTTCCTCAAA ACCAACCAGCCGTAGAACACGACGCAATGATTGACGCTGCCTACAAGGAA CGCATTGTAGCTTGCCCGGTGGTTGATCCGTGCGCGAAAACGTCAAACCT TATGTGGGGAGATGTGATGAAATGGCGTATCGCACCTACTAGTACCCGCT TCCTGATTCTACATCTATCGCGAATGGCTGAAATTAGCTTTGGCAGTAGC TCACGTATCAAAATCACATTTATGCTGTCCGTCGATCACGCCTCCCTCAG GCCCAGACTACGGAAAGCGTAAACGGGAAAAGTCCAGGACCAGTCGACAT GTTGGTCGAGGAAGGCGAGATGGACGGCAAGCTTGCCTTATGCGAACTCA AAAATGAGGGGGCGGCGAAGGGAGGCGTGTCGCCCCTGAGAGGCCTAGAT GTTACTACGGTCGCGATCAAACTCGAGGGTTCAGAGGCGAGAGCGTTGGT GACCTCTTTCGAGAGTTTCGGTTGGCAGCGTTGATTATTGACGGCATTGG CGTTTTAGCAGGACCATATCCGATAATATGCCATGATGTGGATCGTGTAA TGAACGCGTGTGAATACAACCAGATTCGTACATGTTATTGTTCTGCGGGA GTATTTCCGGGTGGCAGTCGAATAACGATTATTTGACGTATTATTTTCGC GTTGACGATGCGACGTTCCTATTTCGGGACTCTCTTTACCCGTGGAGATT CTCGTTGCCGTAAATTATCTTGCGTCTCGTGCAAACCCCGCATTGTTAAA AAAAATGCTTTGACGGAGAGTATGGAAACAGAGAATGACGGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1015:4803..14394-

>mRNA_S-dermatodea_contig1015.113.1 ID=mRNA_S-dermatodea_contig1015.113.1|Name=mRNA_S-dermatodea_contig1015.113.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2676bp|location=Sequence derived from alignment at S-dermatodea_contig1015:4803..14394- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGACGTCCGTAGCAAACTCTGCGCCTACCATGGATGTCCTAAGCG
GCCATCGTATGGCAGGGTTGGCAGCAGGAAAACGAAGTTCTGCAGCGAAC
ACAATGGGGCGGGTATGGTTGATGGTTCGACAACAAGGTGCGCCAGTGAG
GGTTGCGTCAAGTTCGCGGTGTACGGTCCAGATAGCAGCAGACGACAAGG
GTTGCTTTGCTCTCGACACTTCACGGAGGGCCGTCAAGATGGTGGACGTC
CGTAGCAAACTCTGCGCCTACCATGGATGTCCTAAGCGGCCATCGTATGG
CAGGGTTGGCAGCAGGAAAACGAAGTTCTGCAGCGAACACAATGGGGCGG
GTATGGTTGATGGTTCGACAACAAGGTGCGCCAGTGAGGGTTGCGTCAAG
TTCGCGGTGTACGGTCCAGATAGCAGCAGACGACAAGGGTTGCTTTGCTC
TCGACACTTCACGGAGGGCCGTCAAGCTGGACCTTCAGCTGTTGAGGCAG
GAAAGGCAAGGGAGAAGGCCACGGAGACGGACGAGGATTCTGGTGGGCAA
CTTTCTCTCCCGAATACATTGAAGCGGGCACTGAGGGCTGATCGATTCCC
ACGGCAAGTGACGAAGCTGGACCTTCAGCTGTTGAGGCAGGAAAGGCAAG
GGAGAAGGCCACGGAGACGGACGAGGATTCTGGTGGGCAACTTTCTCTCC
CGAATACATTGAAGCGGGCACTGAGGGCTGATCGATTCCCACGGCAAGTG
ACGAAGACACCCGGAAGCGTGGATTGTTGTCCTTCAAGAGGGAAGCGGAT
GCGAGTTTTTGAAAGAGAGAAGGGCGGCGTATCGCTAGAGGCACAGCAGA
CACCCGGAAGCGTGGATTGTTGTCCTTCAAGAGGGAAGCGGATGCGAGTT
TTTGAAAGAGAGAAGGGCGGCGTATCGCTAGAGGCACAGCAGGTCTCAGC
ATTTGTCACGGAATCGTCTCCAACGGCGTCTCCCCATGAATTCACGCCAC
TCGCATCACAGGGCAGGAGCGATCAATCCCGAGGTCTCAGCATTTGTCAC
GGAATCGTCTCCAACGGCGTCTCCCCATGAATTCACGCCACTCGCATCAC
AGGGCAGGAGCGATCAATCCCGAGCAACGCAGAACGTTGGTCGAGACGAC
AGGGCCACGTCGCGAGCACGCAGACATTCGATGCGGTTCGGATGCGGGAA
GGACGGTGTATGTGATCTCCCACCCGACTCATGTGTGGCAACAGCGAATC
CAGCAGAACTGACGCCTACGCAAGGCGTCGTACGGACCAACACAGGAGAG
CGAGAGTTCACTGACTCCACAGGAACCACGAGGTCGGGGAACAGTCTCCT
AGGATGTGGTGGTGGTGGCGAGCAGGTTGAAGCCGGGGACGGACGCGCTA
TGATCAAACCCCATTGTGCAGGCGCTGAAAGAGATGTCTCCACTACCTTT
AGCCAGAGCCGCCGCCATACCCGCGCATCTTGTACCTTCGTCCGTGAGGA
CCGGTGCAAGAGTGCATCATTGGAGCAAGAAAAACGAGAGGCGTTTGTCG
AGCAACGCAGAACGTTGGTCGAGACGACAGGGCCACGTCGCGAGCACGCA
GACATTCGATGCGGTTCGGATGCGGGAAGGACGGTGTATGTGATCTCCCA
CCCGACTCATGTGTGGCAACAGCGAATCCAGCAGAACTGACGCCTACGCA
AGGCGTCGTACGGACCAACACAGGAGAGCGAGAGTTCACTGACTCCACAG
GAACCACGAGGTCGGGGAACAGTCTCCTAGGATGTGGTGGTGGTGGCGAG
CAGGTTGAAGCCGGGGACGGACGCGCTATGATCAAACCCCATTGTGCAGG
CGCTGAAAGAGATGTCTCCACTACCTTTAGCCAGAGCCGCCGCCATACCC
GCGCATCTTGTACCTTCGTCCGTGAGGACCGGTGCAAGAGTGCATCATTG
GAGCAAGAAAAACGAGAGGCGTTTGTCGAGCTCGAGGTGCAGGTGGCTTT
CGATGCGAAGATTTATTCCAAGGTAGAGGCAAACTCGAAGTCCTTAGGGC
ATCGGATGAAGAGTGTCATAGGTGGACCCGGTACAGCAGATCAGCTCGAG
GTGCAGGTGGCTTTCGATGCGAAGATTTATTCCAAGGTAGAGGCAAACTC
GAAGTCCTTAGGGCATCGGATGAAGAGTGTCATAGGTGGACCCGGTACAG
CAGATCAGGCCCAGACTACGGAAAGCGTAAACGGGAAAAGTCCAGGACCA
GTCGACATGTTGGTCGAGGAAGGCGAGATGGACGGCAAGCTTGCCTTATG
CGAACTCAAAAATGAGGGGGCGGCGAAGGGAGGCGTGTCGCCCCTGAGAG
GCCTAGATGTTACTACGGTCGCGATCAAACTCGAGGGTTCAGAGGCGAGA
GCGTTGGTGACCTCTTTCGAGAGTTTCGGTTGGCAGCGTTGAGCCCAGAC
TACGGAAAGCGTAAACGGGAAAAGTCCAGGACCAGTCGACATGTTGGTCG
AGGAAGGCGAGATGGACGGCAAGCTTGCCTTATGCGAACTCAAAAATGAG
GGGGCGGCGAAGGGAGGCGTGTCGCCCCTGAGAGGCCTAGATGTTACTAC
GGTCGCGATCAAACTCGAGGGTTCAGAGGCGAGAGCGTTGGTGACCTCTT
TCGAGAGTTTCGGTTGGCAGCGTTGA
back to top