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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Best eggNOG OG | NA|NA|NA |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 99.8 |
| Seed ortholog evalue | 2.1e-18 |
| Seed eggNOG ortholog | 2880.D8LI19 |
| EggNOG free text desc. | K homology RNA-binding domain |
| EggNOG OGs | 2E9NA@1,2SFZF@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 788 |
| Cds size | 786 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10149.112.1 >prot_S-dermatodea_contig10149.112.1 ID=prot_S-dermatodea_contig10149.112.1|Name=mRNA_S-dermatodea_contig10149.112.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=262bp
ETSARLRKAHKGFVTAVAGRCVSKEQELREEDKKPAALTRSTHAAAAADL
VIATASSEAGAKKQKPRGTNKMPKKNRKKANKAKLAAAASIATSAAAGAA
PLAPSPASSAEKYYPPERFCSAFVEAGNGHDNGRKDCLVIKEWVLSIAAR
TTVATAESMRRYFKGRIEIGVIEVLMKACNNSCRDAVIKCAEIIDIFVPQ
EDKYYGEEKYDDETLTSDSEGANDDLIGGAFAAKERVKIGDFSVEESAIE
RKASEAISNDCK back to topmRNA from alignment at S-dermatodea_contig10149:3875..7260+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10149.112.1 ID=mRNA_S-dermatodea_contig10149.112.1|Name=mRNA_S-dermatodea_contig10149.112.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3386bp|location=Sequence derived from alignment at S-dermatodea_contig10149:3875..7260+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGACCTCCGCCCGTCTCAGGAAGGCCCACAAGGTGCTGTACACGCTATG
TTTTTGTTCTTTCTCCTTGGTTTTACTCTTGGCTATATAATTAATGTTTG
TGCGCTTGAATGCGCGGTGCGGTAATAGCGGTATTTGCGTGGAGGTTGCC
ATATTTAGGACATCGAGAGTGTCAAACCCTTGCTGTAGGGGAGGGGGCTG
TTTGGCGGACCCAATTTTCGAGGTATGTCCTTCGCGAATCCGAGCGTTGT
GCTGATTATTTCGAATGTACTATGCAGATACTTCCGTCTTTGGTGTTTCA
ATTTAATGCATTTATCAGCTGACCACGAGCGGGATTGGCAACCATTGGCG
GACCGGTCGGTTGCAAGCGTGATTGTCAATCAATCGATCTCCCAACCACT
CAACCAATCGACACTGACATGCCATGGCAGCGGGACGTGCCAACCCGTTT
GTTCGAACCGTGGCTGCTTCTTTCCACCCTTCCCCTTCTTAGAAGCGCTC
CGATGCAAAACCAACAAACTGGCGCTTGCTTACGGAGTATAGTGTCTAGC
CGGTCGTTCCGTTAAAATAGTAGAAAGGTCAACCGAGTTCTACCACGAGA
CGTAAACAAGAGAAACTCGAACCCTGCACCCCTAAATCCCGGCTACTCCC
CAAATGCACGATTGTAAACATTTTCATGGTATCGAGTGCCCCACGTAACT
CCGTTTGTGCCCCCCCCTGGCGTGACGATACGCTCCGCAGGGATTTGTCA
CGGCTGTGGCTGGCCGTTGTGTCTCGAAGGAACAGGAGCTCCGCGAAGAG
GATAAGAAGCCTGCCGCCCTTACCCGAAGCACGCACGCTGCAGCGGCTGC
TGACCTCGTCATCGCCACGGCATCGTCCGAGGCCGGGGCCAAGAAACAGA
AGGTATATACGCCGCTTAACTCGGTTCTGTCGTTGTTATAGTACCGCCCT
CCTGTTTTTTCGGCAGCGAATTTTGTCTGAAAATAGTTGGTTCCCTCGGG
TAACGAATGAGGCGGAGGTGTAGATGTGGCGAATCGCAAGTTTCCGCTTA
AGCTGGTGGAGGTCCTCGCATGGCGCGTCTTGGCCGCGGCGCGACTTCGA
AACGATAATCGTGCACACGATCTTAGGCGCTCCTTGAGACAGCAACATCT
CGCGAGAAGAAGGCGTCGATTACGGCTTGTGAAACCCCCCTCCGCTACCC
CGCGCACCCCCCCCCTCCCTCGCATGCTAACAGCCGCGAGGCACGAACAA
GATGCCCAAGAAGAACAGAAAGAAGGCGAACAAGGCGAAGCTTGCCGCAG
CCGCCAGTATCGCTACCAGTGCAGCCGCCGGTGCCGCCCCCCTTGCCCCC
TCCCCAGCGTCCTCGGCCGAAAAATATTATCCCCCCGAACGGTTTTGTTC
GGCTTTTGTCGAGGCTGGGAATGGTCACGACAATGGCCGCAAGGACTGCT
TGGTAATCAAGGAATGGGTGCTCTCTATTGCCGCTCGCACAACGGTGGCT
ACGGCGGAGAGCATGAGGCGTTACTTTAAAGGCCGTATCGAAATAGGTGG
GTACCGGCGTGTTTTTTTGTTTATTTTTATTTCAGTGAGTAAAAAGGTAT
CGATCGTGTACTGTAGTAGTCTCGTATTGTTGCTGTTGTTGTTGTTGTTG
TTGTTGTTTTTTCACGAGAATTTTCTTGCTGCATCTTTTGCAGGCTGTGT
CAAAAGGGGGAGCGTTCGATGCCTGTGTTTTATTTATATCAGGGTCATGT
GCTTGTTCTTCTAGCCCATTTCATAGCACATTAATATAATAGTTTGCTGT
TAATTACGGGGTCAGGCGCTCCGAGCGGCGTGCGGGTTAAATCTGTCATG
TCTGGACATCACGTTTTTTGTCCGGTGTACTGTAGGGGTGCTGGATACCA
CTTGCTCTTGTGCCTTCATGTGACCACGAGCGAGGGATCGGTAAACAACT
TTTCTTTTGTAAATAAGGGCGGGCCGGTCGGTTGCATGTGTGATATTCAA
TCAATCAATCACTAAATATGGGGTACAAGCATGTGTTCGCTCCGTCCCCG
CCATGCCTTTGTTTTACCCGAGGGACCTGGCTGGTCGATTTTCAGTTGTC
GAGTGGAACACGCCCCCGCCTGATTATTTCTCCGAGTCAAGTAAAGCGAC
AGGGTGCTACACCACCTGTATATATACTATATAGGTAACTCCACAGAGAG
TTTTTTCGATCTCTCGATTTCTCATCTGAACACGAGATAGCGGGATCGGC
AACCATCACTATTATGGTGGGGTCGTCGGTTCTAAGTTGTAAGTGTTATA
ATCAATCAATCAGTCAAAAATCAATCAACCACATGACATCAATTCTTCTG
CATCGATATGATACGCACAAGAGGGTCCCGCGCGTGAATGTGGGACTGAA
CTCATGTGAAGAGGTGCCCCACCTGGCATGGAACCTAGAACTTGATCCCA
GCACTCCATGGAACGTCCCATTTTGATTCCTGCAGGCGCGTGGTTGGGTA
GCGTTATTGTGCCAACGGTGTTGGTCTCACCCTTCCCTCGCTATATTTTG
TTTTGATTCACGCCTCGACATCGCTTAACTTCCGCCAGCAGGTGTCATCG
AAGTGTTAATGAAAGCTTGCAACAACAGTTGTAGGGATGCGGTTATCAAA
TGCGCCGAGATTATCGATATCTTCGTTCCTCAGGTGAGAAAAAAATCACG
AGCACACGCTACTGTATCGTTTTTTTAAACGCAACGTTCCAATATGCCTG
CAGCGCCCGACGTTTCTTGAACCTAGACACTGTTAAGACTTATCGTCTGG
TTTGATGGGCGTTTGAGGATAGCCCCTTGGTGCCAGTCGTAGCTTGTGTT
CCTGCGACCTTGTTGCCTTACCAGGGTAATAATTGACCCATGCGCACATG
CGCTGCCATAGACATTTCAGAGGATCTTCGCGAATCGCGCAGATTTTGGC
GGAGGTCATCTGCGCCTTGCCGCAGAAAGATATGTTGGGCCGAAATATTT
TTGCCCCAGGCGAGAAAATATTCTGCAGATTTTGATGTGGTTTCGCCACT
TTTCATGAGATTAAACGCCAATTTTTCTCCTCCGGCGGCCCTCCGGCGGC
CCCGTGCAGGGAGACCGCATATTCCGCCAGAGCCGTAAATATGACCTTGC
TGCCTACCCCCTTAACCCCTTGCACCCCAATGTCACGACAACTATCCAGG
AGGACAAATATTATGGCGAGGAAAAGTACGACGATGAGACGCTCACGTCT
GATAGCGAGGGAGCCAACGACGATCTAATCGGCGGCGCGTTTGCCGCGAA
AGAACGCGTCAAGATCGGCGACTTCTCCGTCGAGGAGAGCGCTATAGAGA
GAAAGGCCAGCGAGGCGATAAGCAACGATTGCAAGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10149:3875..7260+ >mRNA_S-dermatodea_contig10149.112.1 ID=mRNA_S-dermatodea_contig10149.112.1|Name=mRNA_S-dermatodea_contig10149.112.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at S-dermatodea_contig10149:3875..7260+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGACCTCCGCCCGTCTCAGGAAGGCCCACAAGGAGACCTCCGCCCGTCT
CAGGAAGGCCCACAAGGGATTTGTCACGGCTGTGGCTGGCCGTTGTGTCT
CGAAGGAACAGGAGCTCCGCGAAGAGGATAAGAAGCCTGCCGCCCTTACC
CGAAGCACGCACGCTGCAGCGGCTGCTGACCTCGTCATCGCCACGGCATC
GTCCGAGGCCGGGGCCAAGAAACAGAAGGGATTTGTCACGGCTGTGGCTG
GCCGTTGTGTCTCGAAGGAACAGGAGCTCCGCGAAGAGGATAAGAAGCCT
GCCGCCCTTACCCGAAGCACGCACGCTGCAGCGGCTGCTGACCTCGTCAT
CGCCACGGCATCGTCCGAGGCCGGGGCCAAGAAACAGAAGCCGCGAGGCA
CGAACAAGATGCCCAAGAAGAACAGAAAGAAGGCGAACAAGGCGAAGCTT
GCCGCAGCCGCCAGTATCGCTACCAGTGCAGCCGCCGGTGCCGCCCCCCT
TGCCCCCTCCCCAGCGTCCTCGGCCGAAAAATATTATCCCCCCGAACGGT
TTTGTTCGGCTTTTGTCGAGGCTGGGAATGGTCACGACAATGGCCGCAAG
GACTGCTTGGTAATCAAGGAATGGGTGCTCTCTATTGCCGCTCGCACAAC
GGTGGCTACGGCGGAGAGCATGAGGCGTTACTTTAAAGGCCGTATCGAAA
TAGCCGCGAGGCACGAACAAGATGCCCAAGAAGAACAGAAAGAAGGCGAA
CAAGGCGAAGCTTGCCGCAGCCGCCAGTATCGCTACCAGTGCAGCCGCCG
GTGCCGCCCCCCTTGCCCCCTCCCCAGCGTCCTCGGCCGAAAAATATTAT
CCCCCCGAACGGTTTTGTTCGGCTTTTGTCGAGGCTGGGAATGGTCACGA
CAATGGCCGCAAGGACTGCTTGGTAATCAAGGAATGGGTGCTCTCTATTG
CCGCTCGCACAACGGTGGCTACGGCGGAGAGCATGAGGCGTTACTTTAAA
GGCCGTATCGAAATAGGTGTCATCGAAGTGTTAATGAAAGCTTGCAACAA
CAGTTGTAGGGATGCGGTTATCAAATGCGCCGAGATTATCGATATCTTCG
TTCCTCAGGTGTCATCGAAGTGTTAATGAAAGCTTGCAACAACAGTTGTA
GGGATGCGGTTATCAAATGCGCCGAGATTATCGATATCTTCGTTCCTCAG
GAGGACAAATATTATGGCGAGGAAAAGTACGACGATGAGACGCTCACGTC
TGATAGCGAGGGAGCCAACGACGATCTAATCGGCGGCGCGTTTGCCGCGA
AAGAACGCGTCAAGATCGGCGACTTCTCCGTCGAGGAGAGCGCTATAGAG
AGAAAGGCCAGCGAGGCGATAAGCAACGATTGCAAGGAGGACAAATATTA
TGGCGAGGAAAAGTACGACGATGAGACGCTCACGTCTGATAGCGAGGGAG
CCAACGACGATCTAATCGGCGGCGCGTTTGCCGCGAAAGAACGCGTCAAG
ATCGGCGACTTCTCCGTCGAGGAGAGCGCTATAGAGAGAAAGGCCAGCGA
GGCGATAAGCAACGATTGCAAG back to top
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