mRNA_S-dermatodea_contig10148.110.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig10148.110.1
Unique Name	mRNA_S-dermatodea_contig10148.110.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10148.110.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10148.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10148	contig	S-dermatodea_contig10148:742..2601 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	74.3
Seed ortholog evalue	2.2e-10
Seed eggNOG ortholog	2880.D7G1L0
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	1860
Cds size	1860
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622924141.7758882-CDS-S-dermatodea_contig10148:741..2601	1622924141.7758882-CDS-S-dermatodea_contig10148:741..2601	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10148 742..2601 -
1694079046.1217186-CDS-S-dermatodea_contig10148:741..2601	1694079046.1217186-CDS-S-dermatodea_contig10148:741..2601	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10148 742..2601 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10148.110.1	prot_S-dermatodea_contig10148.110.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig10148 742..2601 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig10148:742..2601-
coding sequence from alignment at S-dermatodea_contig10148:742..2601-

protein sequence of mRNA_S-dermatodea_contig10148.110.1

>prot_S-dermatodea_contig10148.110.1 ID=prot_S-dermatodea_contig10148.110.1|Name=mRNA_S-dermatodea_contig10148.110.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=620bp
RRRPRPPGAVGGETGGLRDAPYAQSRAFAEKIKSMRRDDWEGVLTELRLA
ERDLALEGSRVTMHMYAGCIRHLAKCRRWRESVDILRAIRAAERVPDRYC
LSAAIKACSAAGEWEPAVELLHEAKSTGLVDAFCYSSAITACGKGGRSKL
AASLLREMEGAGVSPNVITYNSAISACGNGEHWREAVSLLREMKTKGIDP
DAVSYSAAIAACGNGGQWGEATSLLREMEAAGVASDLVCYSAAIAACGSG
GQWEQAVSLLRKMDAAGVTPNEKSFNSAITACGKGGQWKEAVALLREMAT
KGIDPSVVSYSAAIAACGNGGPWEEALSLLREMEGVGITPNVISFNSAIT
ACGNGAQWREAVTLLIEMTTMGITPDTVSYSAAIVACGKAGRWEEAVSLL
REMRVVGITPSVISYSAAITACGNGGQPKAAVSLLREMERAGVAPSVVSY
SAAITACGNRGQWEEAVSLLREMVTVGVAPNVVSYSAAITACGNGGQWEK
AVNLLREMPTKLISPGAISYNAAITACGNGGRWEEAISLLTEMETRGIAV
GVISYNSAITACGDAGRWEQALRLFGEMKTKGLKPCVVTYSAAILACHKA
GQVDDALSLWREMLTAGITP

mRNA from alignment at S-dermatodea_contig10148:742..2601-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig10148.110.1 ID=mRNA_S-dermatodea_contig10148.110.1|Name=mRNA_S-dermatodea_contig10148.110.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1860bp|location=Sequence derived from alignment at S-dermatodea_contig10148:742..2601- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGGCGGCCACGGCCACCGGGAGCCGTCGGAGGGGAAACGGGAGGTTT
GAGGGATGCGCCCTACGCGCAGTCGCGAGCGTTCGCCGAGAAGATCAAGA
GCATGCGGAGGGATGACTGGGAGGGGGTCCTCACCGAGCTGAGGCTAGCG
GAACGCGACTTGGCGCTCGAGGGCTCCAGGGTCACCATGCACATGTATGC
TGGCTGCATCCGCCACCTGGCGAAGTGTCGTCGGTGGAGGGAGTCCGTGG
ATATCCTGCGGGCGATCCGAGCGGCTGAGAGAGTGCCGGACAGGTACTGC
CTCAGCGCGGCGATCAAGGCGTGCAGCGCTGCGGGGGAGTGGGAGCCCGC
CGTTGAGTTGCTGCACGAGGCGAAGAGCACCGGGTTGGTTGATGCGTTTT
GCTACAGCTCGGCCATCACAGCGTGCGGAAAGGGGGGACGGTCCAAGCTG
GCGGCTTCTCTGTTGAGGGAGATGGAAGGTGCTGGCGTCAGCCCCAACGT
GATTACGTACAACTCCGCCATATCAGCCTGCGGCAATGGGGAGCATTGGA
GGGAGGCGGTGTCTCTGCTGAGGGAGATGAAGACCAAAGGGATCGACCCC
GACGCCGTAAGCTATTCGGCCGCCATCGCGGCGTGTGGAAACGGGGGGCA
GTGGGGAGAAGCCACGTCTCTGCTGCGTGAGATGGAGGCAGCGGGCGTAG
CGTCTGACCTGGTGTGCTATTCAGCGGCCATCGCGGCTTGTGGCAGCGGA
GGTCAGTGGGAGCAGGCGGTGTCCTTGTTACGAAAGATGGACGCTGCGGG
CGTCACACCCAACGAGAAGAGCTTTAACTCCGCTATCACGGCCTGCGGCA
AAGGCGGCCAGTGGAAGGAGGCCGTGGCTCTATTGAGAGAGATGGCGACG
AAGGGGATCGACCCCAGCGTAGTGAGCTATTCAGCGGCCATCGCGGCGTG
TGGCAACGGGGGTCCGTGGGAGGAGGCGTTGTCCCTGTTGAGGGAGATGG
AGGGTGTGGGTATCACCCCTAACGTTATCAGCTTCAACTCCGCGATAACA
GCTTGCGGGAATGGAGCTCAATGGCGGGAGGCCGTGACGTTGTTGATTGA
GATGACGACGATGGGCATCACCCCTGATACGGTCAGCTATTCAGCAGCCA
TCGTAGCCTGCGGCAAGGCCGGCCGATGGGAGGAGGCCGTGTCTCTTTTG
AGGGAGATGCGAGTCGTGGGAATAACCCCCAGCGTTATTTCGTACTCGGC
AGCCATTACGGCGTGTGGCAACGGAGGCCAGCCAAAGGCAGCGGTGTCTT
TGTTGAGAGAGATGGAAAGAGCGGGTGTCGCCCCAAGCGTCGTAAGCTAC
TCGGCGGCGATCACGGCCTGTGGGAACAGAGGTCAGTGGGAGGAGGCCGT
GTCTCTGTTGAGAGAGATGGTAACTGTGGGCGTTGCCCCCAACGTGGTGA
GCTACTCAGCAGCCATAACTGCTTGCGGCAACGGAGGGCAGTGGGAGAAG
GCCGTAAATTTGTTAAGAGAGATGCCAACCAAGCTAATCAGCCCTGGTGC
CATCAGCTACAACGCGGCCATCACAGCCTGTGGGAACGGAGGCCGCTGGG
AGGAGGCCATCTCTCTGTTGACAGAGATGGAGACGAGGGGTATCGCGGTT
GGCGTCATTAGCTACAACTCGGCCATCACAGCCTGTGGCGACGCCGGTCG
ATGGGAGCAGGCCTTGCGCTTGTTCGGAGAGATGAAGACGAAGGGGCTAA
AACCTTGTGTGGTCACCTACTCAGCGGCCATCCTGGCGTGCCACAAAGCA
GGCCAGGTGGACGATGCCTTATCTCTGTGGAGGGAGATGTTGACTGCGGG
GATCACCCCT

Coding sequence (CDS) from alignment at S-dermatodea_contig10148:742..2601-

>mRNA_S-dermatodea_contig10148.110.1 ID=mRNA_S-dermatodea_contig10148.110.1|Name=mRNA_S-dermatodea_contig10148.110.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3720bp|location=Sequence derived from alignment at S-dermatodea_contig10148:742..2601- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGGCGGCCACGGCCACCGGGAGCCGTCGGAGGGGAAACGGGAGGTTT
GAGGGATGCGCCCTACGCGCAGTCGCGAGCGTTCGCCGAGAAGATCAAGA
GCATGCGGAGGGATGACTGGGAGGGGGTCCTCACCGAGCTGAGGCTAGCG
GAACGCGACTTGGCGCTCGAGGGCTCCAGGGTCACCATGCACATGTATGC
TGGCTGCATCCGCCACCTGGCGAAGTGTCGTCGGTGGAGGGAGTCCGTGG
ATATCCTGCGGGCGATCCGAGCGGCTGAGAGAGTGCCGGACAGGTACTGC
CTCAGCGCGGCGATCAAGGCGTGCAGCGCTGCGGGGGAGTGGGAGCCCGC
CGTTGAGTTGCTGCACGAGGCGAAGAGCACCGGGTTGGTTGATGCGTTTT
GCTACAGCTCGGCCATCACAGCGTGCGGAAAGGGGGGACGGTCCAAGCTG
GCGGCTTCTCTGTTGAGGGAGATGGAAGGTGCTGGCGTCAGCCCCAACGT
GATTACGTACAACTCCGCCATATCAGCCTGCGGCAATGGGGAGCATTGGA
GGGAGGCGGTGTCTCTGCTGAGGGAGATGAAGACCAAAGGGATCGACCCC
GACGCCGTAAGCTATTCGGCCGCCATCGCGGCGTGTGGAAACGGGGGGCA
GTGGGGAGAAGCCACGTCTCTGCTGCGTGAGATGGAGGCAGCGGGCGTAG
CGTCTGACCTGGTGTGCTATTCAGCGGCCATCGCGGCTTGTGGCAGCGGA
GGTCAGTGGGAGCAGGCGGTGTCCTTGTTACGAAAGATGGACGCTGCGGG
CGTCACACCCAACGAGAAGAGCTTTAACTCCGCTATCACGGCCTGCGGCA
AAGGCGGCCAGTGGAAGGAGGCCGTGGCTCTATTGAGAGAGATGGCGACG
AAGGGGATCGACCCCAGCGTAGTGAGCTATTCAGCGGCCATCGCGGCGTG
TGGCAACGGGGGTCCGTGGGAGGAGGCGTTGTCCCTGTTGAGGGAGATGG
AGGGTGTGGGTATCACCCCTAACGTTATCAGCTTCAACTCCGCGATAACA
GCTTGCGGGAATGGAGCTCAATGGCGGGAGGCCGTGACGTTGTTGATTGA
GATGACGACGATGGGCATCACCCCTGATACGGTCAGCTATTCAGCAGCCA
TCGTAGCCTGCGGCAAGGCCGGCCGATGGGAGGAGGCCGTGTCTCTTTTG
AGGGAGATGCGAGTCGTGGGAATAACCCCCAGCGTTATTTCGTACTCGGC
AGCCATTACGGCGTGTGGCAACGGAGGCCAGCCAAAGGCAGCGGTGTCTT
TGTTGAGAGAGATGGAAAGAGCGGGTGTCGCCCCAAGCGTCGTAAGCTAC
TCGGCGGCGATCACGGCCTGTGGGAACAGAGGTCAGTGGGAGGAGGCCGT
GTCTCTGTTGAGAGAGATGGTAACTGTGGGCGTTGCCCCCAACGTGGTGA
GCTACTCAGCAGCCATAACTGCTTGCGGCAACGGAGGGCAGTGGGAGAAG
GCCGTAAATTTGTTAAGAGAGATGCCAACCAAGCTAATCAGCCCTGGTGC
CATCAGCTACAACGCGGCCATCACAGCCTGTGGGAACGGAGGCCGCTGGG
AGGAGGCCATCTCTCTGTTGACAGAGATGGAGACGAGGGGTATCGCGGTT
GGCGTCATTAGCTACAACTCGGCCATCACAGCCTGTGGCGACGCCGGTCG
ATGGGAGCAGGCCTTGCGCTTGTTCGGAGAGATGAAGACGAAGGGGCTAA
AACCTTGTGTGGTCACCTACTCAGCGGCCATCCTGGCGTGCCACAAAGCA
GGCCAGGTGGACGATGCCTTATCTCTGTGGAGGGAGATGTTGACTGCGGG
GATCACCCCTCGGCGGCGGCCACGGCCACCGGGAGCCGTCGGAGGGGAAA
CGGGAGGTTTGAGGGATGCGCCCTACGCGCAGTCGCGAGCGTTCGCCGAG
AAGATCAAGAGCATGCGGAGGGATGACTGGGAGGGGGTCCTCACCGAGCT
GAGGCTAGCGGAACGCGACTTGGCGCTCGAGGGCTCCAGGGTCACCATGC
ACATGTATGCTGGCTGCATCCGCCACCTGGCGAAGTGTCGTCGGTGGAGG
GAGTCCGTGGATATCCTGCGGGCGATCCGAGCGGCTGAGAGAGTGCCGGA
CAGGTACTGCCTCAGCGCGGCGATCAAGGCGTGCAGCGCTGCGGGGGAGT
GGGAGCCCGCCGTTGAGTTGCTGCACGAGGCGAAGAGCACCGGGTTGGTT
GATGCGTTTTGCTACAGCTCGGCCATCACAGCGTGCGGAAAGGGGGGACG
GTCCAAGCTGGCGGCTTCTCTGTTGAGGGAGATGGAAGGTGCTGGCGTCA
GCCCCAACGTGATTACGTACAACTCCGCCATATCAGCCTGCGGCAATGGG
GAGCATTGGAGGGAGGCGGTGTCTCTGCTGAGGGAGATGAAGACCAAAGG
GATCGACCCCGACGCCGTAAGCTATTCGGCCGCCATCGCGGCGTGTGGAA
ACGGGGGGCAGTGGGGAGAAGCCACGTCTCTGCTGCGTGAGATGGAGGCA
GCGGGCGTAGCGTCTGACCTGGTGTGCTATTCAGCGGCCATCGCGGCTTG
TGGCAGCGGAGGTCAGTGGGAGCAGGCGGTGTCCTTGTTACGAAAGATGG
ACGCTGCGGGCGTCACACCCAACGAGAAGAGCTTTAACTCCGCTATCACG
GCCTGCGGCAAAGGCGGCCAGTGGAAGGAGGCCGTGGCTCTATTGAGAGA
GATGGCGACGAAGGGGATCGACCCCAGCGTAGTGAGCTATTCAGCGGCCA
TCGCGGCGTGTGGCAACGGGGGTCCGTGGGAGGAGGCGTTGTCCCTGTTG
AGGGAGATGGAGGGTGTGGGTATCACCCCTAACGTTATCAGCTTCAACTC
CGCGATAACAGCTTGCGGGAATGGAGCTCAATGGCGGGAGGCCGTGACGT
TGTTGATTGAGATGACGACGATGGGCATCACCCCTGATACGGTCAGCTAT
TCAGCAGCCATCGTAGCCTGCGGCAAGGCCGGCCGATGGGAGGAGGCCGT
GTCTCTTTTGAGGGAGATGCGAGTCGTGGGAATAACCCCCAGCGTTATTT
CGTACTCGGCAGCCATTACGGCGTGTGGCAACGGAGGCCAGCCAAAGGCA
GCGGTGTCTTTGTTGAGAGAGATGGAAAGAGCGGGTGTCGCCCCAAGCGT
CGTAAGCTACTCGGCGGCGATCACGGCCTGTGGGAACAGAGGTCAGTGGG
AGGAGGCCGTGTCTCTGTTGAGAGAGATGGTAACTGTGGGCGTTGCCCCC
AACGTGGTGAGCTACTCAGCAGCCATAACTGCTTGCGGCAACGGAGGGCA
GTGGGAGAAGGCCGTAAATTTGTTAAGAGAGATGCCAACCAAGCTAATCA
GCCCTGGTGCCATCAGCTACAACGCGGCCATCACAGCCTGTGGGAACGGA
GGCCGCTGGGAGGAGGCCATCTCTCTGTTGACAGAGATGGAGACGAGGGG
TATCGCGGTTGGCGTCATTAGCTACAACTCGGCCATCACAGCCTGTGGCG
ACGCCGGTCGATGGGAGCAGGCCTTGCGCTTGTTCGGAGAGATGAAGACG
AAGGGGCTAAAACCTTGTGTGGTCACCTACTCAGCGGCCATCCTGGCGTG
CCACAAAGCAGGCCAGGTGGACGATGCCTTATCTCTGTGGAGGGAGATGT
TGACTGCGGGGATCACCCCT