mRNA_S-dermatodea_contig10143.106.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10143.106.1
Unique NamemRNA_S-dermatodea_contig10143.106.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.230e-37
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 QVNIFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            +VN+FLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKL+ RMRRDVILD+LSQVSRNF+NLGNFLNTR+
Sbjct:  729 EVNVFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFLNTRV 800
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.180e-37
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 QVNIFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            +VN+FLTYMGDRYLELEDVDNVHLK+HPLVYTNKTWTPRKL+ RMRRDVILD+LSQVSRNF+NLGNFLNTR+
Sbjct: 1217 EVNVFLTYMGDRYLELEDVDNVHLKIHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFLNTRV 1288
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: I2CQJ8_NANGC (Apt1 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQJ8_NANGC)

HSP 1 Score: 83.2 bits (204), Expect = 2.120e-19
Identity = 37/72 (51.39%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 QVNIFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            ++NIF +Y G +   LED++++HLK+HP++YTNKT + R+L+ R+R+DV+LD+L QV+RNF+NLG +L   L
Sbjct:    2 EINIFFSYSG-KGGNLEDLEHLHLKVHPIIYTNKTLSARELLARLRKDVVLDLLKQVNRNFANLGAWLRVSL 72
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A3L6VCD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCD5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.530e-13
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:   10 IFLTYMGDRYL-----ELEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            + LTY   +        LE++    LKLH LVYT+KT T  +LVLR+RRD++LD+LSQV RNF+N+G FL  RL
Sbjct: 1692 VLLTYKSGKATPTTPQHLEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 1765
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A3R6W6P9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W6P9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.680e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            LE++    LKLH LVYT+KT T  +LVLR+RRD++LD+LSQV RNF+N+G FL  RL
Sbjct:  224 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 280
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A3L6VUH8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VUH8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.750e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            LE++    LKLH LVYT+KT T  +LVLR+RRD++LD+LSQV RNF+N+G FL  RL
Sbjct:  706 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 762
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A3R7Y0C2_9STRA (Apt1 domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y0C2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.830e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            LE++    LKLH LVYT+KT T  +LVLR+RRD++LD+LSQV RNF+N+G FL  RL
Sbjct: 1992 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 2048
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A485LBR3_9STRA (Aste57867_19007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBR3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.830e-13
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 VNIFLTYMGDRYL----ELEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            V + LTY   +       LE++    LKLH LVYT+KT T   L+LR+RRD++LDILSQV RNF+N+G FL  RL
Sbjct: 2109 VLVLLTYKSGKSAVTPQHLEEMRGFELKLHSLVYTDKTCTVSDLLLRVRRDILLDILSQVGRNFNNIGVFLKERL 2183
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: A0A024TSZ0_9STRA (Apt1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSZ0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.600e-13
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFLNTRL 216
            LE++    LKLH LVYT+KT T   LVLR+RRD++LD+LSQV RNF+N+G FL  RL
Sbjct: 2228 LEEMRGFELKLHSLVYTDKTCTVSDLVLRVRRDILLDVLSQVGRNFNNIGVFLKERL 2284
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BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Match: H3GL85_PHYRM (Apt1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GL85_PHYRM)

HSP 1 Score: 71.2 bits (173), Expect = 8.720e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVSRNFSNLGNFL 204
            LED+    +K H LVY++KT +P  L+LRMRRD++LD+LSQV RNF+N+GNFL
Sbjct:  351 LEDMRGFEVKTHALVYSDKTCSPMDLLLRMRRDILLDVLSQVGRNFTNIGNFL 403
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10143.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7J9_ECTSI2.230e-3790.28Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE4.180e-3788.89Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQJ8_NANGC2.120e-1951.39Apt1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A3L6VCD5_9STRA3.530e-1351.35Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R6W6P9_9STRA3.680e-1361.40Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A3L6VUH8_9STRA4.750e-1361.40Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7Y0C2_9STRA4.830e-1361.40Apt1 domain-containing protein n=10 Tax=Aphanomyce... [more]
A0A485LBR3_9STRA4.830e-1352.00Aste57867_19007 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TSZ0_9STRA6.600e-1361.40Apt1 domain-containing protein n=2 Tax=Aphanomyces... [more]
H3GL85_PHYRM8.720e-1360.38Apt1 domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10143contigS-dermatodea_contig10143:5870..6306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog42099.EPrPV00000013285
KEGG koko:K22020
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001558,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0009267,GO:0009605,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009888,GO:0009932,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010015,GO:0010053,GO:0010054,GO:0010104,GO:0010105,GO:0010646,GO:0010648,GO:0012505,GO:0016036,GO:0016043,GO:0016049,GO:0021700,GO:0022414,GO:0022622,GO:0023051,GO:0023057,GO:0030154,GO:0030307,GO:0030427,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035618,GO:0035619,GO:0035838,GO:0040007,GO:0040008,GO:0042594,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044706,GO:0045927,GO:0048364,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051286,GO:0051704,GO:0051716,GO:0060560,GO:0065007,GO:0070297,GO:0070298,GO:0071496,GO:0071695,GO:0071840,GO:0080147,GO:0090404,GO:0090406,GO:0090558,GO:0090627,GO:0099402,GO:0120025,GO:0120038,GO:1902531,GO:1902532,GO:1905392
EggNOG free text desc.Source PGD
EggNOG OGs1MFUR@121069,KOG1910@1,KOG1910@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10143.106.1prot_S-dermatodea_contig10143.106.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10143 5870..6282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.5280504-CDS-S-dermatodea_contig10143:5869..59171622924141.5280504-CDS-S-dermatodea_contig10143:5869..5917Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 5870..5917 -
1694079045.9224985-CDS-S-dermatodea_contig10143:5869..59171694079045.9224985-CDS-S-dermatodea_contig10143:5869..5917Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 5870..5917 -
1622924141.5386965-CDS-S-dermatodea_contig10143:6138..62821622924141.5386965-CDS-S-dermatodea_contig10143:6138..6282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 6139..6282 -
1694079045.931914-CDS-S-dermatodea_contig10143:6138..62821694079045.931914-CDS-S-dermatodea_contig10143:6138..6282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 6139..6282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.5539076-UTR-S-dermatodea_contig10143:6282..63061622924141.5539076-UTR-S-dermatodea_contig10143:6282..6306Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10143 6283..6306 -
1694079045.9392996-UTR-S-dermatodea_contig10143:6282..63061694079045.9392996-UTR-S-dermatodea_contig10143:6282..6306Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10143 6283..6306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10143.106.1

>prot_S-dermatodea_contig10143.106.1 ID=prot_S-dermatodea_contig10143.106.1|Name=mRNA_S-dermatodea_contig10143.106.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLVLRMRRDVILDILSQVS
RNFSNLGNFLNTRL
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mRNA from alignment at S-dermatodea_contig10143:5870..6306-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10143.106.1 ID=mRNA_S-dermatodea_contig10143.106.1|Name=mRNA_S-dermatodea_contig10143.106.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=437bp|location=Sequence derived from alignment at S-dermatodea_contig10143:5870..6306- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGAACATATTCCTCACCTACATGGGGGACCGTTACCTTGAGCTCGA
AGATGTGGACAACGTCCACCTCAAGCTGCACCCCCTCGTCTACACCAACA
AAACGTGGACCCCCCGGAAGCTTGTTCTAAGGATGAGGAGGGACGTAATT
CTCGACATCCTATCGCAGGTGAGTAATTGCCGGATTCTGTCCTGGGCATT
GAAGGTGCTTGTGTTGTAGTTACCCCTTCCTCTTTGTGGACATTTTCTCG
CCGTTTTCGCGCTTTGCAACACTGCACTGGCGAGGCAAAAAAGAAGAAGC
CGAGTGTGCTGCCATTTTAAAGTTCAATCACATGTGTCCCATGTCGGGAA
TCATTCTGCCCCCTTGCGCGTCTCCCGAAAATATGCTAGGTGAGCCGCAA
CTTCAGCAACCTTGGAAACTTCCTCAACACGAGGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10143:5870..6306-

>mRNA_S-dermatodea_contig10143.106.1 ID=mRNA_S-dermatodea_contig10143.106.1|Name=mRNA_S-dermatodea_contig10143.106.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig10143:5870..6306- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGACCGTTACCTTGAGCTCGAAGATGTGGACAACGTCCACCTCAA
GCTGCACCCCCTCGTCTACACCAACAAAACGTGGACCCCCCGGAAGCTTG
TTCTAAGGATGAGGAGGGACGTAATTCTCGACATCCTATCGCAGATGGGG
GACCGTTACCTTGAGCTCGAAGATGTGGACAACGTCCACCTCAAGCTGCA
CCCCCTCGTCTACACCAACAAAACGTGGACCCCCCGGAAGCTTGTTCTAA
GGATGAGGAGGGACGTAATTCTCGACATCCTATCGCAGGTGAGCCGCAAC
TTCAGCAACCTTGGAAACTTCCTCAACACGAGGCTCGTGAGCCGCAACTT
CAGCAACCTTGGAAACTTCCTCAACACGAGGCTC
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