mRNA_S-dermatodea_contig10143.105.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10143.105.1
Unique NamemRNA_S-dermatodea_contig10143.105.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10143.105.1 vs. uniprot
Match: A0A7S1TE68_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TE68_9RHOD)

HSP 1 Score: 71.2 bits (173), Expect = 1.340e-10
Identity = 47/121 (38.84%), Postives = 61/121 (50.41%), Query Frame = 2 
Query:   17 VLEQDLPVQYESPQDLSIFDNGIEFQDPVTTLRGKLLYRGMLFFTLMFFRVACKPGSSFFNVIKIDRPGERTIRTVWETGAKTRTGRTLFISGEDNFTV------NEAGLISRHDSAWDQT 361
            VL  DLP QY    D SI+ + I F DPVT LRGKL YRGM+    +   VA  P +  F V +I       + T W +  +TR G  + ISG D F +      + A  + RH S W Q+
Sbjct:   46 VLLHDLPRQYRHDLDWSIYADDITFDDPVTHLRGKLRYRGMIAVLRLLVAVAFVPHTCTFLVQRISWDVSH-VTTDWSSSGQTRWGSLVNISGTDIFHLTGPNKTSNAYQVRRHQSTWHQS 165
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BLAST of mRNA_S-dermatodea_contig10143.105.1 vs. uniprot
Match: A0A1X6P5Y5_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5Y5_PORUM)

HSP 1 Score: 68.9 bits (167), Expect = 3.380e-10
Identity = 47/124 (37.90%), Postives = 61/124 (49.19%), Query Frame = 2 
Query:   29 DLPVQYESPQDLSIFDNGIEFQDPVTTLRGKLLYRGMLFFTLMFFRVACKPGSSFFNVIKIDRPGERTIRTVWETGAKTRTGRTLFISGEDNFTVNEAGLISRHDSAWDQ----TWEDVRDQVV 388
            DLP QY+   D SI+   I F DPVT LRG+L YRGML    +   VA    S+ F V   DR     +RT+               SG D F ++E G ++RH+S WD+     W  VR + V
Sbjct:   33 DLPRQYDGDLDWSIYAPDIVFDDPVTLLRGRLSYRGMLLTLRLLAAVATT--SADFEVRSADRVAADVLRTM---------------SGVDYFHLDEGGRVARHESQWDEPPAAVWAAVRGKRV 139
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10143.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1TE68_9RHOD1.340e-1038.84Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6P5Y5_PORUM3.380e-1037.90Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10143contigS-dermatodea_contig10143:1903..5465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-22_002140.1
Exons4
Model size2093
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10143.105.1prot_S-dermatodea_contig10143.105.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10143 2039..3763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.4448555-UTR-S-dermatodea_contig10143:1902..20381622924141.4448555-UTR-S-dermatodea_contig10143:1902..2038Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10143 1903..2038 +
1694079045.8628237-UTR-S-dermatodea_contig10143:1902..20381694079045.8628237-UTR-S-dermatodea_contig10143:1902..2038Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10143 1903..2038 +
1622924141.4950361-UTR-S-dermatodea_contig10143:3763..54651622924141.4950361-UTR-S-dermatodea_contig10143:3763..5465Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10143 3764..5465 +
1694079045.912517-UTR-S-dermatodea_contig10143:3763..54651694079045.912517-UTR-S-dermatodea_contig10143:3763..5465Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10143 3764..5465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.4611568-CDS-S-dermatodea_contig10143:2038..20451622924141.4611568-CDS-S-dermatodea_contig10143:2038..2045Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 2039..2045 +
1694079045.8745303-CDS-S-dermatodea_contig10143:2038..20451694079045.8745303-CDS-S-dermatodea_contig10143:2038..2045Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 2039..2045 +
1622924141.4696329-CDS-S-dermatodea_contig10143:2531..26041622924141.4696329-CDS-S-dermatodea_contig10143:2531..2604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 2532..2604 +
1694079045.883559-CDS-S-dermatodea_contig10143:2531..26041694079045.883559-CDS-S-dermatodea_contig10143:2531..2604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 2532..2604 +
1622924141.4786701-CDS-S-dermatodea_contig10143:3262..33571622924141.4786701-CDS-S-dermatodea_contig10143:3262..3357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 3263..3357 +
1694079045.897813-CDS-S-dermatodea_contig10143:3262..33571694079045.897813-CDS-S-dermatodea_contig10143:3262..3357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 3263..3357 +
1622924141.4868221-CDS-S-dermatodea_contig10143:3683..37631622924141.4868221-CDS-S-dermatodea_contig10143:3683..3763Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 3684..3763 +
1694079045.9053547-CDS-S-dermatodea_contig10143:3683..37631694079045.9053547-CDS-S-dermatodea_contig10143:3683..3763Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10143 3684..3763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10143.105.1

>prot_S-dermatodea_contig10143.105.1 ID=prot_S-dermatodea_contig10143.105.1|Name=mRNA_S-dermatodea_contig10143.105.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MLFFTLMFFRVACKPGSSFFNVIKIDRPGERTIRTVWETGAKTRTGRTLF
ISGEDNFTVNEAGLISRHDSAWDQTWEDVRDQVV*
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mRNA from alignment at S-dermatodea_contig10143:1903..5465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10143.105.1 ID=mRNA_S-dermatodea_contig10143.105.1|Name=mRNA_S-dermatodea_contig10143.105.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3563bp|location=Sequence derived from alignment at S-dermatodea_contig10143:1903..5465+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCGACTGACTCTTGTCCTGGAGCAAGACCTGCCTGTTCAGTACGAGA
GCCCGCAAGATCTGTCGATATTTGATAACGGCATTGAATTCCAAGATCCG
GTCACCACCCTTAGAGGCAAACTTCTCTACCGGGGAATGCTGTGTGAGGT
TGTATTCGGTGTTGTTATGGCGTTTCTTCGGCCACACGTACGTTTGTCAG
TAGCGTCCACTTCTATTTTTACGTGCGCATCTCACAGGCTTGGATGGGTC
AGCACTGTAACCGCCTTCCTTCGGAATATTAATGCACCACGCCGCTATTT
TTATAGCATAGGAAGGTCCAGCGCCATACTTGACTTGCTTTTCGATAGGA
GGCGTGCCGATGGTAGAGAAACGATCCAATTAATTGCCGACTCATGCACC
TCAAGCAGGTGTCATTTCGCATGGTGGCGCCAACGGTAGCCAAATGATAT
GGCACATTTTTTCGATGACGATTGCATGTCGGTTAGATTACCGGGAACAG
GGGGTCTCCTCTGGTACTAGCACTGAATGCATCTCAAATCTCCAACGAGC
GTACTCTTATGCCACTCTTCCGTGCCTTCATCTGCTTGTATTGCTGACTC
GCACTTTCGTTCGCCTCGCTGAGGTGCAGTCTTCACTCTGATGTTTTTCC
GCGTTGCATGCAAGCCGGGCTCCTCCTTCTTCAACGTCATCAAGATAGAC
CGGTAAGGATCACCGATGGGAACCGTTCGGCAATCGGGCTGATCCTCTGT
TTGGTGTTTGGGCGTAGAACGGAACAATGGGTGGGATTCTTGATTTCGTC
TTCTTCCTTCTCAAAAACTAATTTGCAATTACTTCCCCTGACCTTACCCA
ACCTTGCCTTACTTACCTATCCCACCCTACAAAGGCATGTAATATACATA
TATATATATGTGCATATACGGCGTTTTTTTTACACATGCGTCCAAACTAG
GGGGGGGGGGGGGGGGGTTTTTAGGGGTCCTTCCGCAAAAAAATTGGTAC
CTGGTACGACGTATGAAACACAAAGCCTGCGATGGTCGGCTGGCAACTCC
AATCGTGNNNNNNNNNNCCCCCCCAACAACAAAGTATAACCTTTTCAAAA
ATATTTCCCCCAAAACCAAAAAAAAAAAATTGTGGCCTTCCTTGGGGTTT
GTTGTGTGGGGGTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGTTATTTAGGGGTCCTTCCGCAAATACATTGGTACCTGGTACGAC
GTATGAAACACATAGCCTGCGATGCTCGGCTGCGCACTCCAATCGTGGTG
AAAGTAAATGCAATGATACCATGGCCCGCGGTACCACGTGTTCTGGGCGT
GTTCGGCTAGGCCGGGCGAGCGTACCATTCGCACGGTCTGGGAAACAGGA
GCAAAAACGCGGACAGGACGAACTCTTTTCATCTCTGGGGAAGACAACTT
CACAGGTTGGTAGGACTGCGTTTTTTGTGTGAGTGCACACCAAGTGTTGT
GAAACAGGAAACATCCTCCTGAAGTCAGAGTGAATATTATGATGTTTAAT
ATTTACAGTGTGTGTGTTGGATGCTGGCGGTTCAACTAACTAGGAATTAA
TGTGTAAAGCGACTTTTTGGCTGGTCTCGGGGGGTATGCAACGTTTCCAC
GTTGTTTGGTTCTTTGGATAGCATGCTGACAGCGACGCGTCTCAAGTACC
TTAGTCCTTCTCGATACCTCTTCCGTCTCGTGTTCACCTCCGACACCCAA
TCGCACACCACGCACGCACGCACGCACGCAGTAAACGAGGCAGGTCTGAT
ATCGAGACATGACAGTGCATGGGATCAAACCTGGGAGGACGTGCGGGACC
AGGTTGTCTGAGACAATGCGAATTGATTTGCTACAGTAGTACTATGGAAC
GAATATAAAGCTAAACCTTGGATTGCATATAGTGGGGGTCTGAGCTATAA
AAATTTGGGCTTCTCGTGCTTCTCGGGAGTTTCCCTGAGTGTTCAATATG
GCGATCGTCTGGCTGCAGCACAGGGCACCGTCAGGGTCCCATTACCGGAC
TGATGAGTATGTCGCCGAATGTCGTCACTAACAAGAGGACTAAGTGGGTA
CTGAGGTGACGCCACATGCACAAGTGCACCATGCATGCGAGGTAGGCGTG
GCAAGGTAAGGGCATTCCACCGCCACTACGATGGAGGATATACCACGGCT
GGGTAGTTGTTGGACGTAAAAAAAACGGATCCGGCAGATGGCCCCGAATG
AAGAAGACGGGACTCAGGCTCAAAAGGGTTAACCGGTGGTTGACCACACC
TTTAGGTTGTAGGCTAATATATATATCTTGATCAAGAGAGCTAACGGGCT
AACAAAAACCTACTGCTGGAGTGAATGGGCGGGTCAACTGTGTCCCACGA
ACCCCTGCAAACGTTGCCTACGCGCACCCATACCTACCCTTCGTTCGGCC
AGCAATCCCGTCAAGTATTAATAGCCCCATCTTAGACCTCCGGGGATCGA
GGGTATCGACACAATGAGGCTTGCTGAGAGTCCCCACTCCCCACCGGGGA
ACCTCATGGCTATTGCGCTGTGGCGCAGCTGTGAGAGATAACGGAGATCC
AGCAAAGCTAGACTTTACTGAAGACAAAAAAGGGCTTTATGTCATATTGG
AGAGCACCAACACCTAAAATTGGGTCTATACGAACATGGATGCCTAGCCA
TGTTAACCCCCTACCGGCGCTGTCGTGTTTGACTCGCACCCACCTACGGT
ACTGTACACATACACACGGAGTGTCTCCCGCAATCGCCGCAGAATAACAC
ATGACGCTTGTGCGACATGTAAGGCCAGTCCGACACACGTGTTTCACCAA
GTGTCCGCAAAAAAGCCAACTTACGAACGCCCAAACTAGCGCAATCATGT
TCGCAAAATGGTGCATTTCGTACAGTTGTCCAAGGCTTCCACAAGGCAGA
AAACCGCACCGACCGCGCAAACGCCGTCACCAAAATATTAACATGCAAGT
GCAACCCCACCCATGCTGACGAACAGAGCACAGTCACACGTATATGACGC
GCCTAGACACACGTGGCCTCCGCATTGCTTCCGCGCTTTATCGCACAGGA
CAAACATCAACAGCTACGTGGCAGGGATGCACCCAATTCACTTCCAGAGG
ATCATGGGTGTGCGCCCTCCCGATGATTGTCATCGCCTTGCGTCGCCTCT
CCGGAACCTCCTCCAACACTAGTTACTCCACCTGCACTACCTCCTCCCAC
CCTCTTGGTGGAGAATACGAGCCTTTTTAAAAGCGATTTGCCAGAAGTGC
CACCGGCAGATGCGCCACCAGCACCCCTTCCACCTCTGGCGCCGCCCCCC
CCTAGCTGCCGACCGAACAATAAGCGCTTGGCCTCCTGCTCTTCTGCTCT
GGATCTCTTCACGGCCCCACTGCCGCCACTGCAACTTGGCGAAATCACGA
TTCCCGCTAACTCGGCATCCACAAAGGACTGCATGTCAGCCGTCTCGGCG
GCTGCCACCGCCCCGGGCCCTATAGTGACCGGGCCATCGTCAACGTCGTC
CCACGGGCCATCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10143:1903..5465+

>mRNA_S-dermatodea_contig10143.105.1 ID=mRNA_S-dermatodea_contig10143.105.1|Name=mRNA_S-dermatodea_contig10143.105.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig10143:1903..5465+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGTATGCTGTTCTTCACTCTGATGTTTTTCCGCGTTGCATGCAAGC
CGGGCTCCTCCTTCTTCAACGTCATCAAGATAGACCGTCTTCACTCTGAT
GTTTTTCCGCGTTGCATGCAAGCCGGGCTCCTCCTTCTTCAACGTCATCA
AGATAGACCGGCCGGGCGAGCGTACCATTCGCACGGTCTGGGAAACAGGA
GCAAAAACGCGGACAGGACGAACTCTTTTCATCTCTGGGGAAGACAACTT
CACAGGCCGGGCGAGCGTACCATTCGCACGGTCTGGGAAACAGGAGCAAA
AACGCGGACAGGACGAACTCTTTTCATCTCTGGGGAAGACAACTTCACAG
TAAACGAGGCAGGTCTGATATCGAGACATGACAGTGCATGGGATCAAACC
TGGGAGGACGTGCGGGACCAGGTTGTCTGATAAACGAGGCAGGTCTGATA
TCGAGACATGACAGTGCATGGGATCAAACCTGGGAGGACGTGCGGGACCA
GGTTGTCTGA
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