mRNA_S-dermatodea_contig1014.98.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1014.98.1
Unique NamemRNA_S-dermatodea_contig1014.98.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1014.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1014contigS-dermatodea_contig1014:104..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size509
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1014.98.1prot_S-dermatodea_contig1014.98.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1014 230..571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.9886963-UTR-S-dermatodea_contig1014:103..2291622924140.9886963-UTR-S-dermatodea_contig1014:103..229Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 104..229 +
1694079045.5014372-UTR-S-dermatodea_contig1014:103..2291694079045.5014372-UTR-S-dermatodea_contig1014:103..229Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 104..229 +
1622924141.012073-UTR-S-dermatodea_contig1014:571..6121622924141.012073-UTR-S-dermatodea_contig1014:571..612Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 572..612 +
1694079045.520573-UTR-S-dermatodea_contig1014:571..6121694079045.520573-UTR-S-dermatodea_contig1014:571..612Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 572..612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.0021443-CDS-S-dermatodea_contig1014:229..5711622924141.0021443-CDS-S-dermatodea_contig1014:229..571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 230..571 +
1694079045.5114481-CDS-S-dermatodea_contig1014:229..5711694079045.5114481-CDS-S-dermatodea_contig1014:229..571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 230..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1014.98.1

>prot_S-dermatodea_contig1014.98.1 ID=prot_S-dermatodea_contig1014.98.1|Name=mRNA_S-dermatodea_contig1014.98.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
MCSFVCFRFFLFLNSIKTSSCAEQLQSHLGSETTRSANLYTPEGTAVFGK
IYAQQRTYKNVIQVFIDGASASNALPTLAVRRTVPQGQGGVFVGHSCTLM
VFFTPLLPAVLLS*
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mRNA from alignment at S-dermatodea_contig1014:104..612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1014.98.1 ID=mRNA_S-dermatodea_contig1014.98.1|Name=mRNA_S-dermatodea_contig1014.98.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=509bp|location=Sequence derived from alignment at S-dermatodea_contig1014:104..612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTTGGCTGATTTCGCCTTATGCAACGGTTTTCGCTCGTTCGCGCAACGA
TTTTCCACGAAGAATTGTTTGCTGTATTGGAAATTTAAAATTCAGAGATG
AGATATCGGTTTTTGCTGATACGATTATGTGCTCTTTTGTCTGTTTCCGT
TTCTTTTTGTTTCTTAACAGCATCAAGACTTCATCGTGCGCGGAGCAGTT
ACAGAGCCATTTGGGATCTGAGACAACGCGCAGTGCAAACTTGTATACCC
CAGAAGGCACTGCTGTGTTCGGCAAAATATATGCTCAACAACGTACATAC
AAAAATGTAATACAAGTATTCATCGATGGGGCTTCTGCTTCGAACGCACT
TCCCACCCTTGCTGTACGCCGAACAGTCCCCCAGGGGCAGGGGGGTGTTT
TTGTTGGGCATTCGTGTACTTTAATGGTATTCTTCACTCCTCTGCTTCCC
GCTGTTCTCCTTTCCTGAAAGTTCAACGCAACCCTAGCTTTCGCACCCCA
CTCACCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1014:104..612+

>mRNA_S-dermatodea_contig1014.98.1 ID=mRNA_S-dermatodea_contig1014.98.1|Name=mRNA_S-dermatodea_contig1014.98.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig1014:104..612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTCTTTTGTCTGTTTCCGTTTCTTTTTGTTTCTTAACAGCATCAA
GACTTCATCGTGCGCGGAGCAGTTACAGAGCCATTTGGGATCTGAGACAA
CGCGCAGTGCAAACTTGTATACCCCAGAAGGCACTGCTGTGTTCGGCAAA
ATATATGCTCAACAACGTACATACAAAAATGTAATACAAGTATTCATCGA
TGGGGCTTCTGCTTCGAACGCACTTCCCACCCTTGCTGTACGCCGAACAG
TCCCCCAGGGGCAGGGGGGTGTTTTTGTTGGGCATTCGTGTACTTTAATG
GTATTCTTCACTCCTCTGCTTCCCGCTGTTCTCCTTTCCTGAATGTGCTC
TTTTGTCTGTTTCCGTTTCTTTTTGTTTCTTAACAGCATCAAGACTTCAT
CGTGCGCGGAGCAGTTACAGAGCCATTTGGGATCTGAGACAACGCGCAGT
GCAAACTTGTATACCCCAGAAGGCACTGCTGTGTTCGGCAAAATATATGC
TCAACAACGTACATACAAAAATGTAATACAAGTATTCATCGATGGGGCTT
CTGCTTCGAACGCACTTCCCACCCTTGCTGTACGCCGAACAGTCCCCCAG
GGGCAGGGGGGTGTTTTTGTTGGGCATTCGTGTACTTTAATGGTATTCTT
CACTCCTCTGCTTCCCGCTGTTCTCCTTTCCTGA
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