mRNA_S-dermatodea_contig1014.102.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1014.102.1
Unique NamemRNA_S-dermatodea_contig1014.102.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A6H5KXU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXU2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-13
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  190 MSQGTVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            MSQGTVKA LSGDTV L+GRAG HGPPPEMQLSLASL APKL
Sbjct:    1 MSQGTVKACLSGDTVVLIGRAGTHGPPPEMQLSLASLAAPKL 42
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A3R7BPZ8_9STRA (TNase-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BPZ8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-7
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAV+SGDTV L+G A ++GPPPE+ L+L+SLQAPKL
Sbjct:    7 TVKAVISGDTVVLVGAASSNGPPPEIMLTLSSLQAPKL 44
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: W4FNZ3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNZ3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.750e-7
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAV+SGDTV L+G A ++GPPPE+ L+L+SLQAPKL
Sbjct:    7 TVKAVISGDTVVLVGAASSNGPPPEIMLTLSSLQAPKL 44
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A067C0V4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0V4_SAPPC)

HSP 1 Score: 57.0 bits (136), Expect = 3.250e-7
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAVLSGDTV LMG A  +GPPPE+ L+LASLQAPKL
Sbjct:    7 TVKAVLSGDTVVLMGNA-TNGPPPELMLTLASLQAPKL 43
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A6G0WWT5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWT5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.440e-7
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAV+SGDTV LMG A  +GPPPE+ L+LASLQAPKL
Sbjct:    7 TVKAVISGDTVILMGNA-VNGPPPELMLTLASLQAPKL 43
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A485L4Y9_9STRA (Aste57867_15990 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4Y9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.870e-6
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAV+SGDTV L+G A  +GPPPE+ L+LASLQAPKL
Sbjct:    7 TVKAVISGDTVVLVGSA-TNGPPPELMLTLASLQAPKL 43
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A1W0A2V7_9STRA (Nuclease n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2V7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.880e-6
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAV+SGDTV LMG A   GPPPE+ L+LASLQAPKL
Sbjct:    7 TVKAVISGDTVVLMG-ASKTGPPPEIMLTLASLQAPKL 43
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A662XB56_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XB56_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.180e-6
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  202 TVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            TVKAVLSGDT+ LMG A  +GPPPE+ L+L+SLQAP+L
Sbjct:    7 TVKAVLSGDTLVLMG-AATNGPPPELMLTLSSLQAPRL 43
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A813AMU4_9DINO (SND1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AMU4_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 5.280e-6
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  199 GTVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            GTVKAVLSGDTV L+G A A   P E+QLSLASLQAP++
Sbjct:    2 GTVKAVLSGDTVVLLGNAPAGKRPAELQLSLASLQAPRV 40
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BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Match: A0A2D4C0G7_PYTIN (Nuclease putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0G7_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 5.290e-6
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  196 QGTVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASLQAPKL 315
            + TVKAV+SGDT+ LMG A  +GPPPE+ L+LASLQAP+L
Sbjct:    5 RATVKAVISGDTLVLMG-AATNGPPPELVLTLASLQAPRL 43
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1014.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KXU2_9PHAE1.970e-1388.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3R7BPZ8_9STRA1.120e-771.05TNase-like domain-containing protein n=2 Tax=Aphan... [more]
W4FNZ3_9STRA1.750e-771.05Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A067C0V4_SAPPC3.250e-778.95Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0WWT5_9STRA4.440e-776.32Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L4Y9_9STRA2.870e-673.68Aste57867_15990 protein n=1 Tax=Aphanomyces stella... [more]
A0A1W0A2V7_9STRA2.880e-676.32Nuclease n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
A0A662XB56_9STRA5.180e-671.05Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A813AMU4_9DINO5.280e-671.79SND1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A2D4C0G7_PYTIN5.290e-667.50Nuclease putative n=1 Tax=Pythium insidiosum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1014contigS-dermatodea_contig1014:21671..22287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue7.5e-12
Seed eggNOG ortholog2880.D8LGL1
KEGG koko:K15979
KEGG Pathwayko05169,ko05203,map05169,map05203
GOsGO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009266,GO:0009408,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009685,GO:0009686,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010371,GO:0010372,GO:0010467,GO:0010468,GO:0010494,GO:0010565,GO:0010605,GO:0010629,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016070,GO:0016071,GO:0016101,GO:0016102,GO:0016114,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019439,GO:0019747,GO:0019752,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034605,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043455,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046394,GO:0046483,GO:0046686,GO:0046700,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090351,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.gamete generation
EggNOG OGsCOG1525@1,KOG2039@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.9464142-CDS-S-dermatodea_contig1014:21670..219141622924140.9464142-CDS-S-dermatodea_contig1014:21670..21914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 21671..21914 +
1694079045.469178-CDS-S-dermatodea_contig1014:21670..219141694079045.469178-CDS-S-dermatodea_contig1014:21670..21914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 21671..21914 +
1622924140.9616623-CDS-S-dermatodea_contig1014:22216..222871622924140.9616623-CDS-S-dermatodea_contig1014:22216..22287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 22217..22287 +
1694079045.4899666-CDS-S-dermatodea_contig1014:22216..222871694079045.4899666-CDS-S-dermatodea_contig1014:22216..22287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 22217..22287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1014.102.1prot_S-dermatodea_contig1014.102.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1014 21671..22287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1014.102.1

>prot_S-dermatodea_contig1014.102.1 ID=prot_S-dermatodea_contig1014.102.1|Name=mRNA_S-dermatodea_contig1014.102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
HSIASPFLFFFQAVPAELLDKPTGSETKKEREGHTAGYISSSSSQLSPPP
SPTCDTFTPRTKIMSQGTVKAVLSGDTVFLMGRAGAHGPPPEMQLSLASL
QAPKL
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mRNA from alignment at S-dermatodea_contig1014:21671..22287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1014.102.1 ID=mRNA_S-dermatodea_contig1014.102.1|Name=mRNA_S-dermatodea_contig1014.102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at S-dermatodea_contig1014:21671..22287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGCATAGCGTCTCCCTTCTTGTTCTTCTTTCAAGCCGTCCCCGCAGA
GCTCCTCGACAAGCCAACAGGCAGCGAGACAAAGAAAGAGAGAGAGGGAC
ACACAGCAGGATATATCAGCAGCAGCAGCTCGCAACTCTCTCCTCCACCA
TCTCCTACGTGTGACACCTTTACCCCCCGCACCAAAATCATGTCGCAAGG
CACCGTGAAGGCCGTACTCTCTGGAGACACCGTGTTCCTCATGGGTGAGC
GAGCAGGATATGTCCCATGTGCAGGGCGAGGCGGTTCCTTCGTTGGGCCT
GGACAGCAGCAGCGATCCTTGCTCTTCGCCGTCCTTCATGCTGGGTGTTG
ACGTGTTGTCTAACTCTACCACCACGCGACCTTCTACTATCTATCACGGC
CTGCTGGTTGCCCGTCCCGAGGCACGTGCGGCTCTCCATGTCTCTGGCCT
CCAATGTTCTCAGTTGCCACCCCGCCCCCTTTCCTTTTCGCTCCCTCTAT
CTGCTATTGCCCCACCACTCCACAACACCCGAACGGGATTTGGCAGGACG
CGCCGGAGCTCATGGACCACCCCCCGAGATGCAGCTGTCCCTCGCCTCTC
TGCAGGCTCCGAAGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1014:21671..22287+

>mRNA_S-dermatodea_contig1014.102.1 ID=mRNA_S-dermatodea_contig1014.102.1|Name=mRNA_S-dermatodea_contig1014.102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig1014:21671..22287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGCATAGCGTCTCCCTTCTTGTTCTTCTTTCAAGCCGTCCCCGCAGA
GCTCCTCGACAAGCCAACAGGCAGCGAGACAAAGAAAGAGAGAGAGGGAC
ACACAGCAGGATATATCAGCAGCAGCAGCTCGCAACTCTCTCCTCCACCA
TCTCCTACGTGTGACACCTTTACCCCCCGCACCAAAATCATGTCGCAAGG
CACCGTGAAGGCCGTACTCTCTGGAGACACCGTGTTCCTCATGGCACAGC
ATAGCGTCTCCCTTCTTGTTCTTCTTTCAAGCCGTCCCCGCAGAGCTCCT
CGACAAGCCAACAGGCAGCGAGACAAAGAAAGAGAGAGAGGGACACACAG
CAGGATATATCAGCAGCAGCAGCTCGCAACTCTCTCCTCCACCATCTCCT
ACGTGTGACACCTTTACCCCCCGCACCAAAATCATGTCGCAAGGCACCGT
GAAGGCCGTACTCTCTGGAGACACCGTGTTCCTCATGGGACGCGCCGGAG
CTCATGGACCACCCCCCGAGATGCAGCTGTCCCTCGCCTCTCTGCAGGCT
CCGAAGCTGGACGCGCCGGAGCTCATGGACCACCCCCCGAGATGCAGCTG
TCCCTCGCCTCTCTGCAGGCTCCGAAGCTG
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