mRNA_S-dermatodea_contig10138.97.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10138.97.1
Unique NamemRNA_S-dermatodea_contig10138.97.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10138.97.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.810e-11
Identity = 40/117 (34.19%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:    1 LLNCVIENTLLCRVMTNGSPCGGWKIVHDHLAENAERVKTRVQDEWFDLQQKDNEPPKEYFLRAFDLVAKNASFGLILSEHDANRQILRHLSTKFETEKKILNAIGDFSRQKLETVL 351
            L++ V+   +   ++   SP  GWKIV +   E  +  K+R++ +W +L++K +E P++Y  RA  L  + AS G+I  E DAN++I R L + +   K IL A    + + LETV+
Sbjct:   51 LMSKVLYPPIQSLILACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEKKASESPQDYIARAEALRLRLASVGMIKDETDANKEIARGLPSSYVVHKGILLAHDVLTLRTLETVV 167
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BLAST of mRNA_S-dermatodea_contig10138.97.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.220e-8
Identity = 29/104 (27.88%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   40 VMTNGSPCGGWKIVHDHLAENAERVKTRVQDEWFDLQQKDNEPPKEYFLRAFDLVAKNASFGLILSEHDANRQILRHLSTKFETEKKILNAIGDFSRQKLETVL 351
            ++++G P   W+I  +H   +A   +T +Q EW +L Q     PKEY  R + L  + +S+G+ ++E DANR ++R+L  ++      L +     ++++E ++
Sbjct:  204 IISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNLLPEYVVYTGFLMSESGLEKERVERII 307
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BLAST of mRNA_S-dermatodea_contig10138.97.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-6
Identity = 36/118 (30.51%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:    1 LLNCVIENTLLCRVMTNGSPCGGWKIVHDHLAENAERVKTRVQDEWFDLQQKDNEPPKEYFLRAFDLVAKNASFGLILSEHDANRQILRHL-STKFETEKKILNAIGDFSRQKLETVL 351
            L++ V+   +   ++   SP  GWKIV +   E  +  K+R++ +W +L+ +++E P++Y   +  L  + AS G I  E  AN+ I R L S+ +  +K  L A    +   LETV+
Sbjct:  185 LISKVLYPPIQSLILAFESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEMRESESPQDYIAHSEALRLRLASVGTIKDETYANKDIARGLPSSLYAVQKGNLLAYDVLTLHTLETVV 302
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BLAST of mRNA_S-dermatodea_contig10138.97.1 vs. uniprot
Match: A0A6H5KMP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP0_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.420e-5
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   79 VHDHLAENAERVKTRVQDEWFDLQQKDNEPPKEYFLRAFDLVAKNASFGLILSEHDANRQILRHL-STKFETEKKILNAIGDFSRQKLETVL 351
            V +   E  +  K+R++ +W  L+ K++E P++Y  R+  L  + AS G I  E DAN+ I R L S+ +  +K IL A    + + LETV+
Sbjct:  132 VTEFYQEKKQSEKSRLEQDWKQLEMKESESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSLYAVQKGILLAHDVLTLRTLETVV 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10138.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KDM9_9PHAE1.810e-1134.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN82_9PHAE9.220e-827.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHU8_9PHAE1.110e-630.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KMP0_9PHAE6.420e-534.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10138contigS-dermatodea_contig10138:3374..3724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.9100711-CDS-S-dermatodea_contig10138:3373..37241622924140.9100711-CDS-S-dermatodea_contig10138:3373..3724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10138 3374..3724 -
1694079045.4522355-CDS-S-dermatodea_contig10138:3373..37241694079045.4522355-CDS-S-dermatodea_contig10138:3373..3724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10138 3374..3724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10138.97.1prot_S-dermatodea_contig10138.97.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10138 3374..3724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10138.97.1

>prot_S-dermatodea_contig10138.97.1 ID=prot_S-dermatodea_contig10138.97.1|Name=mRNA_S-dermatodea_contig10138.97.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
LLNCVIENTLLCRVMTNGSPCGGWKIVHDHLAENAERVKTRVQDEWFDLQ
QKDNEPPKEYFLRAFDLVAKNASFGLILSEHDANRQILRHLSTKFETEKK
ILNAIGDFSRQKLETVL
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mRNA from alignment at S-dermatodea_contig10138:3374..3724-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10138.97.1 ID=mRNA_S-dermatodea_contig10138.97.1|Name=mRNA_S-dermatodea_contig10138.97.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig10138:3374..3724- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTTTGAACTGCGTGATTGAAAACACGCTTCTCTGCCGTGTGATGACGAA
TGGTTCGCCGTGTGGTGGGTGGAAAATCGTGCATGATCATCTTGCCGAAA
ATGCTGAGCGTGTGAAGACCAGAGTCCAGGACGAATGGTTTGACTTGCAG
CAGAAGGACAATGAACCCCCCAAGGAATATTTCTTAAGAGCGTTTGATCT
TGTAGCGAAGAACGCTAGTTTTGGCCTCATCCTCTCAGAGCATGATGCTA
ACCGCCAAATCCTTCGACACCTTTCCACAAAGTTTGAAACTGAGAAGAAA
ATCCTCAACGCCATCGGTGATTTTTCGCGGCAGAAACTAGAGACGGTGCT
T
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Coding sequence (CDS) from alignment at S-dermatodea_contig10138:3374..3724-

>mRNA_S-dermatodea_contig10138.97.1 ID=mRNA_S-dermatodea_contig10138.97.1|Name=mRNA_S-dermatodea_contig10138.97.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig10138:3374..3724- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTTTGAACTGCGTGATTGAAAACACGCTTCTCTGCCGTGTGATGACGAA
TGGTTCGCCGTGTGGTGGGTGGAAAATCGTGCATGATCATCTTGCCGAAA
ATGCTGAGCGTGTGAAGACCAGAGTCCAGGACGAATGGTTTGACTTGCAG
CAGAAGGACAATGAACCCCCCAAGGAATATTTCTTAAGAGCGTTTGATCT
TGTAGCGAAGAACGCTAGTTTTGGCCTCATCCTCTCAGAGCATGATGCTA
ACCGCCAAATCCTTCGACACCTTTCCACAAAGTTTGAAACTGAGAAGAAA
ATCCTCAACGCCATCGGTGATTTTTCGCGGCAGAAACTAGAGACGGTGCT
TCTTTTGAACTGCGTGATTGAAAACACGCTTCTCTGCCGTGTGATGACGA
ATGGTTCGCCGTGTGGTGGGTGGAAAATCGTGCATGATCATCTTGCCGAA
AATGCTGAGCGTGTGAAGACCAGAGTCCAGGACGAATGGTTTGACTTGCA
GCAGAAGGACAATGAACCCCCCAAGGAATATTTCTTAAGAGCGTTTGATC
TTGTAGCGAAGAACGCTAGTTTTGGCCTCATCCTCTCAGAGCATGATGCT
AACCGCCAAATCCTTCGACACCTTTCCACAAAGTTTGAAACTGAGAAGAA
AATCCTCAACGCCATCGGTGATTTTTCGCGGCAGAAACTAGAGACGGTGC
TT
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