mRNA_S-dermatodea_contig1013.92.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1013.92.1
Unique NamemRNA_S-dermatodea_contig1013.92.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1013.92.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.690e-56
Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    4 LTGSPNEHRFEYVEHLNDIALDCRESNLRTSTTLHANNLHMNRLKRAFWAEGIAGAARKAEEINRSQKPYWNIVRFLPPLPDFVFAFKRFKRPRDPPRQLETLQPAGCSSAEQ 342
            +TGSP+EH FEYVEHLN IALDCRESNL TSTTLH NNLHMNR K AFW EG+ GAA KAE +NRSQ+ YWNIVR LPPLPDFVFAFK  KRPRD  R++ETLQPAGC++ EQ
Sbjct:   50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
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BLAST of mRNA_S-dermatodea_contig1013.92.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.130e-55
Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 GLTGSPNEHRFEYVEHLNDIALDCRESNLRTSTTLHANNLHMNRLKRAFWAEGIAGAARKAEEINRSQKPYWNIVRFLPPLPDFVFAFKRFKRPRDPPRQLETLQPA 321
            G  GSPNE RF YVEHL+DIALDCRESNLRTSTT H NNLHMNRLKRAF  +G+AGA RKAEEI+RSQ+PYW IVR LP LPDFVFAFK  KRPRD PR+LETLQPA
Sbjct:    9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1013.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN6_9PHAE3.690e-5676.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ6_ECTSI2.130e-5580.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1013contigS-dermatodea_contig1013:17672..18016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.6521392-CDS-S-dermatodea_contig1013:17671..180161622924140.6521392-CDS-S-dermatodea_contig1013:17671..18016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1013 17672..18016 -
1694079045.3182452-CDS-S-dermatodea_contig1013:17671..180161694079045.3182452-CDS-S-dermatodea_contig1013:17671..18016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1013 17672..18016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1013.92.1prot_S-dermatodea_contig1013.92.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1013 17672..18016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1013.92.1

>prot_S-dermatodea_contig1013.92.1 ID=prot_S-dermatodea_contig1013.92.1|Name=mRNA_S-dermatodea_contig1013.92.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
GLTGSPNEHRFEYVEHLNDIALDCRESNLRTSTTLHANNLHMNRLKRAFW
AEGIAGAARKAEEINRSQKPYWNIVRFLPPLPDFVFAFKRFKRPRDPPRQ
LETLQPAGCSSAEQ*
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mRNA from alignment at S-dermatodea_contig1013:17672..18016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1013.92.1 ID=mRNA_S-dermatodea_contig1013.92.1|Name=mRNA_S-dermatodea_contig1013.92.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at S-dermatodea_contig1013:17672..18016- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTTTGACAGGCTCGCCCAACGAGCACAGGTTTGAGTACGTCGAGCACCT
TAACGACATTGCCCTAGACTGTCGCGAAAGTAATTTGAGGACTTCCACTA
CGTTGCACGCTAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTTTGG
GCCGAGGGTATAGCAGGCGCGGCACGCAAAGCGGAAGAGATAAATCGATC
ACAGAAACCGTACTGGAACATCGTTCGTTTTCTGCCCCCGCTGCCTGATT
TTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGACCCACCACGCCAA
CTGGAGACGTTGCAACCTGCAGGATGCTCTTCGGCTGAGCAATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1013:17672..18016-

>mRNA_S-dermatodea_contig1013.92.1 ID=mRNA_S-dermatodea_contig1013.92.1|Name=mRNA_S-dermatodea_contig1013.92.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig1013:17672..18016- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTTTGACAGGCTCGCCCAACGAGCACAGGTTTGAGTACGTCGAGCACCT
TAACGACATTGCCCTAGACTGTCGCGAAAGTAATTTGAGGACTTCCACTA
CGTTGCACGCTAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTTTGG
GCCGAGGGTATAGCAGGCGCGGCACGCAAAGCGGAAGAGATAAATCGATC
ACAGAAACCGTACTGGAACATCGTTCGTTTTCTGCCCCCGCTGCCTGATT
TTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGACCCACCACGCCAA
CTGGAGACGTTGCAACCTGCAGGATGCTCTTCGGCTGAGCAATGAGGTTT
GACAGGCTCGCCCAACGAGCACAGGTTTGAGTACGTCGAGCACCTTAACG
ACATTGCCCTAGACTGTCGCGAAAGTAATTTGAGGACTTCCACTACGTTG
CACGCTAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTTTGGGCCGA
GGGTATAGCAGGCGCGGCACGCAAAGCGGAAGAGATAAATCGATCACAGA
AACCGTACTGGAACATCGTTCGTTTTCTGCCCCCGCTGCCTGATTTTGTG
TTCGCGTTCAAGCGTTTCAAACGGCCGCGAGACCCACCACGCCAACTGGA
GACGTTGCAACCTGCAGGATGCTCTTCGGCTGAGCAATGA
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