mRNA_S-dermatodea_contig10126.90.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10126.90.1
Unique NamemRNA_S-dermatodea_contig10126.90.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10126.90.1 vs. uniprot
Match: D7FWA2_ECTSI (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.010e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2 
Query:  146 RREKWWGVAKAVAYELRPFTLPTKGDLRNAVDSVVTNSQQLGAEARRLAPEIVGLAKVVNPLRAL 340
            RREKWW V KA+A+EL+PF+LP+  D++ A  +V TN +Q+  E  R+ PE VG  K VNPLRAL
Sbjct:   12 RREKWWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRAL 76
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BLAST of mRNA_S-dermatodea_contig10126.90.1 vs. uniprot
Match: A0A6H5L1U7_9PHAE (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-11
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 2 
Query:  146 RREKWWGVAKAVAYELRPFTLPTKGDLRNAVDSVVTNSQQLGAEARRLAPEIVGLAKVVNPLRAL 340
            R EKWW + KA+A+EL+PF+LP   D++ A  +V TN +QL  E  R+ PE +G  K VNP RAL
Sbjct:   12 RGEKWWSLVKAIAFELKPFSLPGVEDVKAAAVAVRTNVRQLTDELVRVTPEALGAVKAVNPSRAL 76
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10126.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWA2_ECTSI3.010e-1455.38SAYSvFN domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L1U7_9PHAE1.280e-1150.77SAYSvFN domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10126contigS-dermatodea_contig10126:7213..7555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7FWA2
Preferred nameSAYSD1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Uncharacterized conserved domain (SAYSvFN)
EggNOG OGsKOG3249@1,KOG3249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised domain SAYSvFN
Ec32 orthologEc-01_003920.1
Exons1
Model size343
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.4649887-UTR-S-dermatodea_contig10126:7212..73331622924140.4649887-UTR-S-dermatodea_contig10126:7212..7333Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10126 7213..7333 +
1694079045.166502-UTR-S-dermatodea_contig10126:7212..73331694079045.166502-UTR-S-dermatodea_contig10126:7212..7333Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10126 7213..7333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.4735594-CDS-S-dermatodea_contig10126:7333..75551622924140.4735594-CDS-S-dermatodea_contig10126:7333..7555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10126 7334..7555 +
1694079045.1808734-CDS-S-dermatodea_contig10126:7333..75551694079045.1808734-CDS-S-dermatodea_contig10126:7333..7555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10126 7334..7555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10126.90.1prot_S-dermatodea_contig10126.90.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10126 7334..7555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10126.90.1

>prot_S-dermatodea_contig10126.90.1 ID=prot_S-dermatodea_contig10126.90.1|Name=mRNA_S-dermatodea_contig10126.90.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp
MAEEQQKDRREKWWGVAKAVAYELRPFTLPTKGDLRNAVDSVVTNSQQLG
AEARRLAPEIVGLAKVVNPLRALM
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mRNA from alignment at S-dermatodea_contig10126:7213..7555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10126.90.1 ID=mRNA_S-dermatodea_contig10126.90.1|Name=mRNA_S-dermatodea_contig10126.90.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=343bp|location=Sequence derived from alignment at S-dermatodea_contig10126:7213..7555+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTGCTTCCTGCTTCCTGCTCGCTTCACGCGGGGAGGGACTCTCTCGC
TCTGTGCATCACATTCATCTACACAGCGAGCGTTCGTTGCAGGCGGTGAC
AGATAGAGCACACACGTCGCCATGGCCGAAGAACAGCAGAAGGATAGGAG
GGAGAAGTGGTGGGGAGTGGCGAAGGCGGTCGCTTACGAGCTCCGTCCTT
TCACCCTGCCCACCAAAGGCGACCTCAGGAACGCGGTGGACTCCGTCGTG
ACGAACTCGCAGCAGCTCGGAGCCGAGGCCCGGAGGCTGGCGCCCGAGAT
CGTGGGCCTGGCCAAGGTCGTGAACCCGCTGAGGGCGCTCATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10126:7213..7555+

>mRNA_S-dermatodea_contig10126.90.1 ID=mRNA_S-dermatodea_contig10126.90.1|Name=mRNA_S-dermatodea_contig10126.90.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig10126:7213..7555+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGAAGAACAGCAGAAGGATAGGAGGGAGAAGTGGTGGGGAGTGGC
GAAGGCGGTCGCTTACGAGCTCCGTCCTTTCACCCTGCCCACCAAAGGCG
ACCTCAGGAACGCGGTGGACTCCGTCGTGACGAACTCGCAGCAGCTCGGA
GCCGAGGCCCGGAGGCTGGCGCCCGAGATCGTGGGCCTGGCCAAGGTCGT
GAACCCGCTGAGGGCGCTCATGATGGCCGAAGAACAGCAGAAGGATAGGA
GGGAGAAGTGGTGGGGAGTGGCGAAGGCGGTCGCTTACGAGCTCCGTCCT
TTCACCCTGCCCACCAAAGGCGACCTCAGGAACGCGGTGGACTCCGTCGT
GACGAACTCGCAGCAGCTCGGAGCCGAGGCCCGGAGGCTGGCGCCCGAGA
TCGTGGGCCTGGCCAAGGTCGTGAACCCGCTGAGGGCGCTCATG
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