mRNA_S-dermatodea_contig1012.84.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1012.84.1
Unique NamemRNA_S-dermatodea_contig1012.84.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: D7FW34_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW34_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.010e-105
Identity = 145/160 (90.62%), Postives = 156/160 (97.50%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            MS+TL T+LGDIKIEVFCDT PRTA+NFLAHCASGYYDGTKFHRNIKGFM+QGGDPLGTGKGGESIWGGPFPDEFH DNKHDRRG+VSMASKGPNTNKSQFFITY+RQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERP+T+I+IK +TIHANP+AE
Sbjct:    1 MSVTLETSLGDIKIEVFCDTVPRTAENFLAHCASGYYDGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGMVSMASKGPNTNKSQFFITYTRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPLTEIIIKHVTIHANPVAE 160
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: K3X4J3_GLOUD (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X4J3_GLOUD)

HSP 1 Score: 270 bits (690), Expect = 6.370e-88
Identity = 123/163 (75.46%), Postives = 142/163 (87.12%), Query Frame = 3 
Query:   39 VARMSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            + R+S+TLHTTLG+IKIEVFCDTAPR+A+NFLA CA G YDGT+FHRN+KGFM+QGGDP GTGKGGESIWGG F DEFH  N+H+ RG+VSMA+ GPNTNK QFFITY++QPHLNNVYTVFGKVIDG DVLD +EK PV  K RPV DI I+ +TIHANP+AE
Sbjct:    1 MVRVSVTLHTTLGEIKIEVFCDTAPRSAENFLALCACGAYDGTRFHRNMKGFMVQGGDPTGTGKGGESIWGGKFDDEFHPQNRHNCRGIVSMANNGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDTLEKVPVDTKYRPVKDITIQSVTIHANPLAE 163
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A8K1CJL0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL0_PYTOL)

HSP 1 Score: 265 bits (677), Expect = 5.370e-86
Identity = 118/160 (73.75%), Postives = 141/160 (88.12%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            MS+TLHT LG+IK+E+FCDTAP+TA+NFLA CA G YDGTKFHRNI+GFM+QGGDP GTGKGGESIWGG F DEFH  N+H+ RG+VSMA+ GPNTN+ QFFITY++QPHLNNVYT+FGKVIDG+DVLD +EK+ V  K RP+ DI+I+ +TIHANPIAE
Sbjct:    1 MSVTLHTNLGEIKLEIFCDTAPKTAENFLALCACGSYDGTKFHRNIRGFMVQGGDPTGTGKGGESIWGGKFDDEFHPQNRHNCRGIVSMANNGPNTNRQQFFITYAKQPHLNNVYTIFGKVIDGMDVLDAMEKSQVDAKNRPLKDIVIESVTIHANPIAE 160
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: D0MRP3_PHYIT (Peptidyl-prolyl cis-trans isomerase n=21 Tax=Peronosporaceae TaxID=4777 RepID=D0MRP3_PHYIT)

HSP 1 Score: 264 bits (675), Expect = 1.080e-85
Identity = 120/160 (75.00%), Postives = 137/160 (85.62%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            MS+TLHTTLGDIKIEV CDTAPR ++NFLA CASG YDGTKFHRN+KGFM+QGGDP GTGKGG+SIWGG   DEFH  N+H+ RG+VSMA+ GPNTNK QFFITY +QPHLNNVYTVFGK+IDG+D LD IEK PV  K RP+ +I IK +TIHANPIA+
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRASENFLALCASGAYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYGKQPHLNNVYTVFGKIIDGMDTLDAIEKTPVDAKNRPLKEIAIKSVTIHANPIAD 160
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A067DAD1_SAPPC (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067DAD1_SAPPC)

HSP 1 Score: 261 bits (668), Expect = 1.200e-84
Identity = 121/160 (75.62%), Postives = 136/160 (85.00%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            MS+TLHT+LGDIKIEVFCDT P TA+NFLA CAS  YD T FHRN+KGFMIQGGDP GTGKGGESIWGG F DEFH  N+H+ RG+VSMA+ GPNTNK QFFITY++QPHLNNVYTVFGKVIDG DVLD +EK PV  K RP+ +IL+  ITIHANP+AE
Sbjct:    1 MSVTLHTSLGDIKIEVFCDTVPTTAENFLALCASNAYDKTTFHRNMKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNARGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKTPVDAKSRPLKEILLHSITIHANPLAE 160
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A485L1A0_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485L1A0_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.700e-84
Identity = 121/160 (75.62%), Postives = 137/160 (85.62%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            MS+TLHTTLGDIK+EVFCDTAPRTA++FLA CAS  YD T FHRN+KGFMIQGGDP GTGKGGESIWGG   DEFH  N+H+ RG+VSMA+ GPNTNK QFFITY++QPHLNNVYTVF KVIDG DVLD +EKAPV  K RPV DI++  +TIHANP+AE
Sbjct:    1 MSVTLHTTLGDIKLEVFCDTAPRTAESFLALCASNGYDNTLFHRNMKGFMIQGGDPTGTGKGGESIWGGAMNDEFHPQNRHNTRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFAKVIDGFDVLDQMEKAPVDAKHRPVKDIVLHKVTIHANPLAE 160
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A024U9Y3_9STRA (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9Y3_9STRA)

HSP 1 Score: 258 bits (659), Expect = 2.970e-83
Identity = 119/160 (74.38%), Postives = 137/160 (85.62%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            MS+TLHT+LGDIK+EVFCDTAPRTA+NFLA CAS  YD T FHRN+KGFMIQGGDP GTGKGGESIWGG   DEFH  N+H+ RG+VSMA+ G NTNK QFFITY++QPHLNNVYTVFGKVIDG DVLD +EKA V  K RP+ DI++ ++TIHANPIA+
Sbjct:    1 MSVTLHTSLGDIKMEVFCDTAPRTAENFLALCASNSYDNTVFHRNMKGFMIQGGDPTGTGKGGESIWGGAIDDEFHPQNRHNVRGIVSMANSGANTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKAQVDSKHRPLKDIVLNNVTIHANPIAD 160
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A6A4C5Z0_9STRA (PPIase cyclophilin-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4C5Z0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 5.830e-83
Identity = 122/166 (73.49%), Postives = 142/166 (85.54%), Query Frame = 3 
Query:   30 SQPVARMSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            + P + MS+TLHTTLGDIKIEV CDTAPRTA+NFLA CASG YDGTKFHRN+KGFM+QGGDP GTGKGG+SIWGG   DEFH  N+H+ RG+VSMA+ GPNTNK QFFI Y++QPHLNNVYTVFGKVIDG+D LD +EK PV  K RP+ +I+IK +TIHANPIA+
Sbjct:  306 TSPPSTMSVTLHTTLGDIKIEVCCDTAPRTAENFLALCASGSYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGAIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFIAYAKQPHLNNVYTVFGKVIDGMDTLDAMEKTPVDAKNRPLKEIVIKSVTIHANPIAD 471
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A6A3NC26_9STRA (PPIase cyclophilin-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NC26_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.740e-82
Identity = 121/166 (72.89%), Postives = 141/166 (84.94%), Query Frame = 3 
Query:   30 SQPVARMSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKDITIHANPIAE 527
            + P + MS+TLHTTLGDIKIEV CDTAPRTA+NFLA CASG YDGTKFHRN+KGFM+QGGDP  TGKGG+SIWGG   DEFH  N+H+ RG+VSMA+ GPNTNK QFFI Y++QPHLNNVYTVFGKVIDG+D LD +EK PV  K RP+ +I+IK +TIHANPIA+
Sbjct:  271 TSPPSTMSVTLHTTLGDIKIEVCCDTAPRTAENFLALCASGAYDGTKFHRNMKGFMVQGGDPTSTGKGGQSIWGGAIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFIAYAKQPHLNNVYTVFGKVIDGMDTLDAMEKTPVDAKNRPLKEIVIKSVTIHANPIAD 436
[Close]
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Match: A0A6U3ZYE6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZYE6_9STRA)

HSP 1 Score: 256 bits (653), Expect = 4.730e-82
Identity = 119/166 (71.69%), Postives = 142/166 (85.54%), Query Frame = 3 
Query:   48 MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFMIQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQFFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPV--GKKE----RPVTDILIKDITIHANPIAE 527
            M++T HT+LGD+K+EVFCDTAPRT+ NFLA CASGYYDGT FHRN++GFMIQGGDP GTGKGGESIWGG F DEFH  N HDRRGVVSMA+KGPNTNKSQFFITY RQPHLNNVYTVFG+++DG DVL+ +E+ PV  G K+    RP+T  +++ +TIHANP+A+
Sbjct:    1 MAVTFHTSLGDLKLEVFCDTAPRTSFNFLALCASGYYDGTVFHRNMRGFMIQGGDPKGTGKGGESIWGGTFEDEFHSTNTHDRRGVVSMANKGPNTNKSQFFITYERQPHLNNVYTVFGRILDGWDVLEQMERLPVVGGTKKSVAHRPITPPVVEKVTIHANPLAD 166
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1012.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW34_ECTSI1.010e-10590.63Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
K3X4J3_GLOUD6.370e-8875.46Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythia... [more]
A0A8K1CJL0_PYTOL5.370e-8673.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MRP3_PHYIT1.080e-8575.00Peptidyl-prolyl cis-trans isomerase n=21 Tax=Peron... [more]
A0A067DAD1_SAPPC1.200e-8475.63Peptidyl-prolyl cis-trans isomerase n=3 Tax=Saprol... [more]
A0A485L1A0_9STRA1.700e-8475.63Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphano... [more]
A0A024U9Y3_9STRA2.970e-8374.38Peptidyl-prolyl cis-trans isomerase n=6 Tax=Aphano... [more]
A0A6A4C5Z0_9STRA5.830e-8373.49PPIase cyclophilin-type domain-containing protein ... [more]
A0A6A3NC26_9STRA1.740e-8272.89PPIase cyclophilin-type domain-containing protein ... [more]
A0A6U3ZYE6_9STRA4.730e-8271.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1012contigS-dermatodea_contig1012:17776..22439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue3.9e-84
Seed eggNOG ortholog2880.D7FW34
KEGG koko:K12734
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0884@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-01_003190.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size1021
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1012.84.1prot_S-dermatodea_contig1012.84.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1012 18261..22392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.0730648-UTR-S-dermatodea_contig1012:17775..182601622924140.0730648-UTR-S-dermatodea_contig1012:17775..18260Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1012 17776..18260 -
1694079044.8293855-UTR-S-dermatodea_contig1012:17775..182601694079044.8293855-UTR-S-dermatodea_contig1012:17775..18260Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1012 17776..18260 -
1622924140.1298168-UTR-S-dermatodea_contig1012:22392..224391622924140.1298168-UTR-S-dermatodea_contig1012:22392..22439Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1012 22393..22439 -
1694079044.919219-UTR-S-dermatodea_contig1012:22392..224391694079044.919219-UTR-S-dermatodea_contig1012:22392..22439Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1012 22393..22439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.0839667-CDS-S-dermatodea_contig1012:18260..183891622924140.0839667-CDS-S-dermatodea_contig1012:18260..18389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 18261..18389 -
1694079044.8473873-CDS-S-dermatodea_contig1012:18260..183891694079044.8473873-CDS-S-dermatodea_contig1012:18260..18389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 18261..18389 -
1622924140.0950549-CDS-S-dermatodea_contig1012:19554..196561622924140.0950549-CDS-S-dermatodea_contig1012:19554..19656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 19555..19656 -
1694079044.8590758-CDS-S-dermatodea_contig1012:19554..196561694079044.8590758-CDS-S-dermatodea_contig1012:19554..19656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 19555..19656 -
1622924140.110221-CDS-S-dermatodea_contig1012:21531..216881622924140.110221-CDS-S-dermatodea_contig1012:21531..21688Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 21532..21688 -
1694079044.8708334-CDS-S-dermatodea_contig1012:21531..216881694079044.8708334-CDS-S-dermatodea_contig1012:21531..21688Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 21532..21688 -
1622924140.1199794-CDS-S-dermatodea_contig1012:22291..223921622924140.1199794-CDS-S-dermatodea_contig1012:22291..22392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 22292..22392 -
1694079044.902433-CDS-S-dermatodea_contig1012:22291..223921694079044.902433-CDS-S-dermatodea_contig1012:22291..22392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 22292..22392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1012.84.1

>prot_S-dermatodea_contig1012.84.1 ID=prot_S-dermatodea_contig1012.84.1|Name=mRNA_S-dermatodea_contig1012.84.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
MSITLHTTLGDIKIEVFCDTAPRTAQNFLAHCASGYYDGTKFHRNIKGFM
IQGGDPLGTGKGGESIWGGPFPDEFHQDNKHDRRGVVSMASKGPNTNKSQ
FFITYSRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPVTDILIKD
ITIHANPIAESS*
back to top

mRNA from alignment at S-dermatodea_contig1012:17776..22439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1012.84.1 ID=mRNA_S-dermatodea_contig1012.84.1|Name=mRNA_S-dermatodea_contig1012.84.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4664bp|location=Sequence derived from alignment at S-dermatodea_contig1012:17776..22439- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAATGTAGCTCGGCAGTTGACGTGCCTCTCAGCCGGTGGCAAGGATG
TCGATCACCCTCCATACCACGTTGGGAGACATCAAGATCGAGGTGTTCTG
CGACACGGCCCCTCGAACCGCGCAGAACTTCCTCGCGCACTGCGCAAGGT
GGGGGCAGAGTTTGGGTGTCGGGTTTCGTCCATCGAGTGTTTCGTTGGGC
TATGATACCCACTATTACCCACTATGATGTGCATCATATCATAGCTCTAC
CATAAGAGCAACAGACATCAGTATTCGCACGGCGGTCTTTAGGGGAGGGA
TTTTGCATTGCGAGACCAGCTCTACGTGCCTAATACATACAACACCGACA
CCGTGCTACGGGTTTGAAACTACCATGACGGGTGTCCAGCTCCACAGCCA
TTGTTTGCACAAAATCGACCAATTGCTAACTTGATGGAATATACTTGTAC
AGACAGCAGCACACCACTTCGCAATACAGACAGCGTGTGTGTATCATACC
TATGATACTACAGTATTAATATGAAACTCTGCGTAATAGCGGACCAATCC
TCGATCAAGATCGCTGCCTCACGTTCAAATACAGCCTACCCAGCCTGGGG
AGCGATGGATGATACCTGCGTGTTGTTAAGTATGATATGATAAGCTCGAA
GAAATATACGACAGAGATACGTCTACGCCCGATCAACACACTTTACACAC
ACGCCTTCCATCATGCCATCTATCCTCCGCTCGCGCAATCAATGAACACA
GCGGCTACTACGATGGGACCAAGTTCCACCGAAATATAAAGGGCTTCATG
ATCCAAGGGGGAGATCCACTGGGAACGGGGAAGGGCGGGGAGAGCATCTG
GGGCGGGCCGTTTCCTGACGAGTTTCATCAGGACAACAAGCACGATCGAA
GGGGGGTGGTGAGTAGAGGCGCTCAAAAGCACAGCTCACTACAAGTAGAG
CTCTAGAGCCCTAATCTTTTATTTATGTTTTACAACACGAGCTCGTTCCA
TTGTTGTTGTTGTTGTTGGCACACATGGTATGATAGACTTGCTTTTCCGC
GGTCCGTCTGTGGTCACAAGGGATCATCCATCATCCCATCTCTCCCCGGT
TCTCACCTTTGATTTTTACCGCGCATTGGGTTCGGCACTCCCACAGCTCG
CGGATTTCTCGGATTGCTGTGCAATTTATTGCCTCTGCCCACCGTGTTGC
TTGTAGCGTTGACAGCGCTACAAGGACGATAATTCGAACGTTTCTTTGGA
CAGCAGCGTCACGAAATGCAAGGGCGTACTATAACTTGTACACTATTAAT
ATGATAGTGTAGTCGAACCCTGGACAACTGTCACTGTGTAGTGGTTGACA
TACAACTACAAGTAGGCTTTTTTGTTTCTCCTTTCACAACGCCCAAACAC
AAACCCTAACCCTGACCCGAACTCGTAGCGTTCGCTAGACAGGTGCTAGG
TGGGCGTAGGGTGGAAACGTTCTATGATATAATAGGTCGTTGTGGCCAAA
TCTGGCCTATTTCCGAAAGTAGGGTTGGGTCCTGGACCAATGCCTACTGG
CCGTATACTGGTACTTGCCAGTACCTACGTACTGGCTGGGGGTGGCCAGT
ACTACTGTAGTACATGCACTATATTTACGTACGTCCCATATAACGCCTCA
GTATTCAACGGAAACCCATCGAATTGCGCCGCGCCGCGTTGACAGAGAGA
GAGAGAGAGCACACACACGCACAAACACAGTAGAGGGAAGGGTGTACGTA
CTATGAGAACGATGGACAGCGTTGTTACTTCTAGCGGCGCGCCCGCTGTA
GACCCCAGCGGTGGCCCTCCTTTGGCCGAGCCCGTTGCGGCCTCAAGCGG
CGCTGGTGACGACGTGTAAGTTGTATCCCGCGCTGATACGTCCCGCGCTG
AGCTTCAGGCGCGGCTGAAGGAGAGACTGCGCACGGAGAGATCGCTAAGG
GTGAAGAACCAGCTGCGGAAGTCCAAGCCGGCTGGCGCCTCTGCCTACCA
CTGGGCGTACTTTCAATGCTACATCCAAACTTGTAATATAAAAAACATAG
GAAACAACTTCTCAATGTATGTGTCGCCACGATTCCGGAGCTAATCGGCA
TCGCACTTTGTCTTTGGTGTGTGGCATATTTTGTAGATTGTTAGGTGTCG
TATTCAATGCTGTATTTCTCCCCGAGTTGATGCCTCTACGCATGGTCCAA
AACCACTAAATATTTATCGTCAAGTGAAGCCAAATCGGTGAAAAACGCGC
CCCCAGCGGGGCCCTCCGAGGGCGCCTCCGGCGGGGCGCGGCTTCGCCAC
GACCAGTATACTGGTAATATCCAGTATAGTGGCTGCTGCCAGCACCCAAC
CCTATCTAATTCGGGTGTACTGAGCGAAAACGATGTATTTTATATCTTCG
TATATTCTCACGCAAACCGTAAACCCAGCCGCCAACCAACCACAGCACCG
GAACATGTTCTAATTCGCCTCAATATCAGACATTGTCCAAAAGTCGACTG
GGTGGGTAAACTCTACTGCTGTATGTGAAATGCGAAATATGCTCTTTTTG
GCGGCAGCGGTGGATCTCAACACCCGGTGCTGGTGGTTGTGCCAACACTA
TTACTGTAATAATTATAGAAAGACTGCGGTTTAACCCATATCCTTCGAGG
ACAGCACGGCCTAATTTACTTGACACAACAATTGTGCGCTAAACCACTGT
TGTGATTTCTCTGCAGATCCAAAACGCTTCGCCTCGCCCATCATGCAACG
GTGCCCCGGCCCGCCTACTCTCTCCGCTTCCAGGTATCGATGGCAAGCAA
GGGGCCTAATACCAACAAGAGCCAGTTCTTCATCACCTACTCCAGGCAAC
CACACCTTAACAACGTGTACACCGTCTTTGGAAAGGTGTGGGCCATACGT
AGGATCAGGATGGAAGTATCGTAGCATTGCAGTGCCGTTCGGCGCTGCGT
GTGTCTTACTATAGTGTTAGTGTACGGGTCGAGTGTACGGGTCGGGTCGA
TACGCCAACGCAGCACACACGCCATCAACCGTTTCGATGGCGCTTTCAGT
CTTCGCTCCATCATACGGGACGACTTGATGCTCTGACCGGCGTCATCGCT
GGTATGCTAAGACGCAGCCAGCCTTGATGCGGAAGAAGAACTCTTAAAAG
CGTTACATATACTTGTCGAGCTCTAGCAGAGCAGAACGAAAGCCGAGAGG
AGCTAGTTGTACTTGTACCACTTGTCTATTTTTTGCCGACTATGACGGAA
AAGAACAACGAGAATCAACTGCATCTTCTTCATATAACTCCCGCTCCGTA
CCCATGTTCCTAGTGTTTAGCTCTCGTAAATCGACTTTGCCAGGTCGCTG
TAGAGCACAGAGGCGGAACCTTCGGCAATGACCTCTCCTTGGCCCACTTG
AGAGGTTTCGAGTGTGCAGAATTTTAGTTGCCACAAGAAAATGACATCGG
TTTTGCGGTGGCCAAGGCTGCCTGGATCGATCGTTTAAAAAACAAATCCT
TGGGAAAGTTGGGTTTGACAGACATAAATAGATTTTGCTAGGTCGAACGG
CCAGGTGTGGCGCGGTGGTGACCAGCCCAGCCGGTAGAGTCAAGCCTTGG
CTACCCATCGATAGTGTGCAGAATTTCGGTTCGCCAGTAGAAGCCGAGCT
CTAGCTCGCCTGTCCCTGTTTGATAAGGAAAAAACGTGGTGCGTGTGCTT
CCACAGCTAGATTTTGAGTTTGTTGTTTGATTCCAGAATTCGAAAAATGG
GCAAAAAAAACACAAGTGGTACCCTTTTGGCAACTCTTCGTCAGCCCTCT
CCGCAACTATCGGCCGTTGCCGACCCGGAGTGCAGGATCCCCCACTGCAT
ATGCATCCATACTACCAGGCAACTGGTCAGCTTTTCGAAGGGTAACAGGC
GTCCAACTAGCGCACGTCGTTGTGTGGCAAAATCCTGGCACGCGTGTCGC
TTAACTGGCAAAATCCTGGCACGCGTGTCGCTTAACCGTATCATACGCGG
CACCTGACCGCCCCTATCGGCTCGCCGTTTGACCACCGCATGGCCTACAG
GTGATCGATGGGCTCGACGTGCTGGACGTGATTGAGAAGGCGCCCGTGGG
GAAAAAAGAGCGGCCCGTGACAGACATCCTCATCAAGGACATCACCATAC
ACGCAAATCCTATCGCCGAGAGCAGCTGATGGTACTGCTCCTGCTGTAGA
TATGCATGCACGTCCGTCTCCTAGGCGGGTTTTGTGAGGGGGTATCGTGG
TGTTGTGTTTTTTGTACTGTAGCGAGGAATTAACGAGTTGAGAGCTTTTT
GCGAAGAGGGAAGAGTCCGTGACTCAAGACAGGGACAAACGCCGCGCTCG
CTGCTGACACGCTGTACCATGTTGCGACACGTTTCCGGGGCTTTTTGTTT
ATCAACAACGTGTCGCCGGGGATAGTTTAGCGCGTACGGGGACAAACCAG
CCGTTGCAGCACGACTCGGGTCAAAATTCTTCGGTACTCTTAACGCAGTG
CTTTTACCGCGGTAACCACGGTGATAGTACTCGGTACTGTTACCGTGCAA
AATCGTAAGTACCAATACCATCCAAACCGTTACCAAGCAAATTACGTTCT
CCCGTTCCCATGCAAACCGTTACCGAGCGAATCATATTCTCCCTTTCCCG
TCCAAACAATTACC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1012:17776..22439-

>mRNA_S-dermatodea_contig1012.84.1 ID=mRNA_S-dermatodea_contig1012.84.1|Name=mRNA_S-dermatodea_contig1012.84.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig1012:17776..22439- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGATCACCCTCCATACCACGTTGGGAGACATCAAGATCGAGGTGTT
CTGCGACACGGCCCCTCGAACCGCGCAGAACTTCCTCGCGCACTGCGCAA
GATGTCGATCACCCTCCATACCACGTTGGGAGACATCAAGATCGAGGTGT
TCTGCGACACGGCCCCTCGAACCGCGCAGAACTTCCTCGCGCACTGCGCA
AGCGGCTACTACGATGGGACCAAGTTCCACCGAAATATAAAGGGCTTCAT
GATCCAAGGGGGAGATCCACTGGGAACGGGGAAGGGCGGGGAGAGCATCT
GGGGCGGGCCGTTTCCTGACGAGTTTCATCAGGACAACAAGCACGATCGA
AGGGGGGTGCGGCTACTACGATGGGACCAAGTTCCACCGAAATATAAAGG
GCTTCATGATCCAAGGGGGAGATCCACTGGGAACGGGGAAGGGCGGGGAG
AGCATCTGGGGCGGGCCGTTTCCTGACGAGTTTCATCAGGACAACAAGCA
CGATCGAAGGGGGGTGGTATCGATGGCAAGCAAGGGGCCTAATACCAACA
AGAGCCAGTTCTTCATCACCTACTCCAGGCAACCACACCTTAACAACGTG
TACACCGTCTTTGGAAAGGTATCGATGGCAAGCAAGGGGCCTAATACCAA
CAAGAGCCAGTTCTTCATCACCTACTCCAGGCAACCACACCTTAACAACG
TGTACACCGTCTTTGGAAAGGTGATCGATGGGCTCGACGTGCTGGACGTG
ATTGAGAAGGCGCCCGTGGGGAAAAAAGAGCGGCCCGTGACAGACATCCT
CATCAAGGACATCACCATACACGCAAATCCTATCGCCGAGAGCAGCTGAG
TGATCGATGGGCTCGACGTGCTGGACGTGATTGAGAAGGCGCCCGTGGGG
AAAAAAGAGCGGCCCGTGACAGACATCCTCATCAAGGACATCACCATACA
CGCAAATCCTATCGCCGAGAGCAGCTGA
back to top