mRNA_S-dermatodea_contig1012.82.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1012.82.1
Unique NamemRNA_S-dermatodea_contig1012.82.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1012.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1012contigS-dermatodea_contig1012:11713..13257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size492
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1012.82.1prot_S-dermatodea_contig1012.82.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1012 11822..13257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924139.6698773-UTR-S-dermatodea_contig1012:11712..118211622924139.6698773-UTR-S-dermatodea_contig1012:11712..11821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1012 11713..11821 +
1694079044.4666739-UTR-S-dermatodea_contig1012:11712..118211694079044.4666739-UTR-S-dermatodea_contig1012:11712..11821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1012 11713..11821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924139.6786065-CDS-S-dermatodea_contig1012:11821..121551622924139.6786065-CDS-S-dermatodea_contig1012:11821..12155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 11822..12155 +
1694079044.478994-CDS-S-dermatodea_contig1012:11821..121551694079044.478994-CDS-S-dermatodea_contig1012:11821..12155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 11822..12155 +
1622924139.6910536-CDS-S-dermatodea_contig1012:13210..132571622924139.6910536-CDS-S-dermatodea_contig1012:13210..13257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 13211..13257 +
1694079044.4943125-CDS-S-dermatodea_contig1012:13210..132571694079044.4943125-CDS-S-dermatodea_contig1012:13210..13257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1012 13211..13257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1012.82.1

>prot_S-dermatodea_contig1012.82.1 ID=prot_S-dermatodea_contig1012.82.1|Name=mRNA_S-dermatodea_contig1012.82.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MGYARCVAMLLLGYRATCGRAFVVRPRLGPVKCHVTRHRNSIRRAPRFSK
RLLVASSLDEAANEVVEPLGGLEKASAGEPWSLLPKAAVPVLAAVGAWAA
AASIAGAADTFAGGAQMPLALSQLLAD
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mRNA from alignment at S-dermatodea_contig1012:11713..13257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1012.82.1 ID=mRNA_S-dermatodea_contig1012.82.1|Name=mRNA_S-dermatodea_contig1012.82.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1545bp|location=Sequence derived from alignment at S-dermatodea_contig1012:11713..13257+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGCATGTGAGAGGTCCCTGAACAGCTTACGTGTACTCGCGGATCACAC
ACTGCTGTATCACAGATTATCAATACAGGTCGTGAGTCAACACTGCGTCG
GCATCGGAGATGGGATACGCACGATGCGTTGCGATGCTCCTGCTAGGCTA
CCGAGCAACCTGTGGACGAGCGTTCGTGGTCAGGCCGCGACTTGGGCCTG
TCAAGTGCCACGTCACGAGACATAGGAACAGCATCCGCCGTGCGCCTAGA
TTCTCCAAGCGGTTGTTAGTCGCGTCTTCTCTGGACGAGGCTGCTAACGA
AGTGGTGGAGCCACTGGGTGGCCTCGAGAAAGCCAGCGCGGGAGAGCCAT
GGAGTCTGCTGCCGAAGGCTGCCGTACCCGTGCTCGCTGCGGTGGGTGCT
TGGGCAGCAGCTGCTTCGATCGCCGGCGCTGCTGATACCTTTGGTGCGTT
GCTCTCCTCTGCGAGGAGTTTGCTTTGGCCTTAGTTGGTGATCGAACCTG
ACAGCGTGCGTCCGATAACCTTGTCGTGTGGATCGTGTGTGGGGCACCCG
GGACCACGTGGGTATCGTACGAACGCAGGCATCGTGAGGCGTTGCAGTAG
ACTCTGGTGATGAGAGGACACGCGGAGAAACAACACACATTTGTTTGGAA
GACTCAATTTCCCAATACTCGTATAATATTGCCTATATTATTGTACTTGT
ATCTCGTAACTGCTGGTCCTGACTGGTTGTTCTGACGGGCTTCGATGCAG
CAACTCGTCTCTTCAACAAGGAGCAGCCACGGCCTGCGTGGCGCGAACAA
TCCTACCTCTGGGTTGTAACAAAATGGGTTGCGTGGATTACACCCGACTT
TTTACTCCGATCGCCCTTAGCGGTCAGAGCAGCCACAGGCCTGAAACGTG
GTCGCCACGTCTGTTGTGTTATGTAAGGCAGAAAGGCGCACCTTGGTTCC
TGGGTTACTGTAATTGCTGCAAGTCGGAAGAAGGCAGGAGGCCCTTCGTC
ATTCGTCAACTCTGTTGTGTGCCTTTGCCTTCCCTCGTAGAACTGGTCTC
AATGAGGTAGAAGTTTGTTACCAACACCGGGATTGTAGGAACACAACCCT
GTCTAAGTAGCACACCTTCAAAACACAAGTGTGCTCCTATACCTTCAATG
AATGACACTGGAACAATGTTATGCTTGTCCCTTGCGACGGTAACCAAACG
CACGCCGTCCAATAGAGCTATTAATAAGCCGACTGCTACAACACCTCAAC
ATACCATACATATTTGTGCGCTTGCGCGCTTGTCGTATATACATTACAGT
ATCATATCTTATCATGTTTAGCTCTTGTGCCTTCATTTGACCACGAGCGG
GATCGGTAACCATTTTTGCAATTGCAAATAATGCCGGGCCGGTCGGTTGT
ATGTGATAATCAATTAGAAAGAAAAATGTTCAACAACCCCCATCCTAATC
CTAACCGATCGCGCGACCTCGTCCTGAATTTTTCATCTCTTGTCGCAGCG
GGAGGGGCCCAGATGCCTCTGGCCCTGTCCCAGCTACTTGCGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1012:11713..13257+

>mRNA_S-dermatodea_contig1012.82.1 ID=mRNA_S-dermatodea_contig1012.82.1|Name=mRNA_S-dermatodea_contig1012.82.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig1012:11713..13257+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGATACGCACGATGCGTTGCGATGCTCCTGCTAGGCTACCGAGCAAC
CTGTGGACGAGCGTTCGTGGTCAGGCCGCGACTTGGGCCTGTCAAGTGCC
ACGTCACGAGACATAGGAACAGCATCCGCCGTGCGCCTAGATTCTCCAAG
CGGTTGTTAGTCGCGTCTTCTCTGGACGAGGCTGCTAACGAAGTGGTGGA
GCCACTGGGTGGCCTCGAGAAAGCCAGCGCGGGAGAGCCATGGAGTCTGC
TGCCGAAGGCTGCCGTACCCGTGCTCGCTGCGGTGGGTGCTTGGGCAGCA
GCTGCTTCGATCGCCGGCGCTGCTGATACCTTTGATGGGATACGCACGAT
GCGTTGCGATGCTCCTGCTAGGCTACCGAGCAACCTGTGGACGAGCGTTC
GTGGTCAGGCCGCGACTTGGGCCTGTCAAGTGCCACGTCACGAGACATAG
GAACAGCATCCGCCGTGCGCCTAGATTCTCCAAGCGGTTGTTAGTCGCGT
CTTCTCTGGACGAGGCTGCTAACGAAGTGGTGGAGCCACTGGGTGGCCTC
GAGAAAGCCAGCGCGGGAGAGCCATGGAGTCTGCTGCCGAAGGCTGCCGT
ACCCGTGCTCGCTGCGGTGGGTGCTTGGGCAGCAGCTGCTTCGATCGCCG
GCGCTGCTGATACCTTTGCGGGAGGGGCCCAGATGCCTCTGGCCCTGTCC
CAGCTACTTGCGGACCGGGAGGGGCCCAGATGCCTCTGGCCCTGTCCCAG
CTACTTGCGGAC
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