mRNA_S-dermatodea_contig10104.73.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10104.73.1
Unique NamemRNA_S-dermatodea_contig10104.73.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 4.960e-34
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = -1
Query:   13 MASSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMA-MKPAGSGRAGAG 276
            ++SSI+ELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLA +FP+  AFR+ALSENGAEFPDSL DNLLRIIGAM   K A +GRAG G
Sbjct:    2 VSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPDPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKGASAGRAGGG 90          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.070e-34
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = -1
Query:   13 MASSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMA-MKPAGSGRAGAG 276
            ++SSI+ELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLA +FPE  AFR+ALSENGAEFPDSL DNLLRIIGAM   K A +GR G G
Sbjct:    2 VSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKAASAGRGGVG 90          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.990e-30
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = -1
Query:   22 SSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGSGRA 270
            S ++ELQRL+L+SKVCTELDNHLGLSDRTLAEFIIHLAA+FPE  AFR AL+ENGAEFP +LCDNLLRII  M+    G+G A
Sbjct:    2 SELDELQRLALISKVCTELDNHLGLSDRTLAEFIIHLAAEFPEPAAFRSALAENGAEFPGALCDNLLRIIKLMSGDGGGAGSA 84          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: W7TCI3_9STRA (Atp-dependent rna helicase dhx8 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCI3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.650e-23
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = -1
Query:   52 SSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAM 270
            +++++LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA    +A +FR AL ENGAEFP + CD L  +I AM
Sbjct:    2 AALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAM 74          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A7S2RRS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRS8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.470e-22
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = -1
Query:   13 SIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGSGRAGAG 267
            ++E+L  L LVSKVCTELDNHLGLSD+TLAEFIIHLA     A  F   LS NGAEFP +L ++L R+I    MKP   G++GAG
Sbjct:    1 TMEDLLHLQLVSKVCTELDNHLGLSDKTLAEFIIHLADGVSSATGFEAKLSANGAEFPTALAESLFRLI--QQMKPKAGGKSGAG 83          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: UPI001C4BCA0F (ATP-dependent RNA helicase DHX8-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4BCA0F)

HSP 1 Score: 91.7 bits (226), Expect = 1.240e-21
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = -1
Query:   31 MASSIEELQRL---SLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGS 276
            MA++++E++RL   SLVSKVCTEL+NHLG+S++ LAEFII+LA   P    F+ AL ENGAEF D+L  NLLR+I  M  +P+ S
Sbjct:    1 MAAALDEIKRLEYLSLVSKVCTELENHLGISEKDLAEFIINLAEKHPTFETFKAALGENGAEFTDTLIGNLLRLIQTMRPRPSTS 85          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A4D9CSB1_9STRA (HA2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSB1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.420e-21
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = -1
Query:   52 GAMASSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAM 282
            G MA+ +++LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA    +A +FR AL ENGAEFP + CD L  +I AM
Sbjct:    7 GTMAA-LDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAM 82          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A7R8YMD4_HERIL (RNA helicase n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8YMD4_HERIL)

HSP 1 Score: 98.6 bits (244), Expect = 3.140e-21
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = -1
Query:   10 IEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGSGRAGAGV 264
            +E+L+ LSLVSK+CTELDNHLGL+D+ LAEFII LA       AF+KAL ENGAEFPDS   NLLRII    MKP G G+  + V
Sbjct:    4 LEKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLANKSGTFEAFKKALIENGAEFPDSFISNLLRII--QLMKPTGKGKVSSSV 86          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A182S737_9DIPT (Uncharacterized protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182S737_9DIPT)

HSP 1 Score: 93.6 bits (231), Expect = 7.330e-21
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = -1
Query:   34 SSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAG 270
            + +E+L+ LSLVSK+CTEL+NHLGL+D+ LAEFII LA   P   AF++ L ENGAEF DS   NLLRII    MKPAG
Sbjct:    2 NELEQLEHLSLVSKICTELENHLGLNDKDLAEFIIDLAHKNPTIEAFKRVLVENGAEFSDSFTTNLLRII--QLMKPAG 78          
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: K1QZI9_CRAGI (ATP-dependent RNA helicase DHX8 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QZI9_CRAGI)

HSP 1 Score: 92.8 bits (229), Expect = 7.890e-21
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = -1
Query:   40 IEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKP 264
            +++L+ LSLVSKVCTEL+NHLGL+D+ LAEFIIHLA        F+KAL ENGAEF DSL  NLLR+I  M  KP
Sbjct:    4 LQKLEYLSLVSKVCTELENHLGLNDKDLAEFIIHLAEKNDTFEKFKKALDENGAEFADSLVANLLRLIQKMKPKP 78          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN25_ECTSI4.960e-3480.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEZ0_9PHAE5.070e-3480.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV72_9STRA2.990e-3074.70Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
W7TCI3_9STRA2.650e-2363.01Atp-dependent rna helicase dhx8 (Fragment) n=1 Tax... [more]
A0A7S2RRS8_9STRA4.470e-2260.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI001C4BCA0F1.240e-2156.47ATP-dependent RNA helicase DHX8-like n=1 Tax=Plect... [more]
A0A4D9CSB1_9STRA1.420e-2163.64HA2 domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7R8YMD4_HERIL3.140e-2162.35RNA helicase n=1 Tax=Hermetia illucens TaxID=34369... [more]
A0A182S737_9DIPT7.330e-2162.03Uncharacterized protein n=1 Tax=Anopheles maculatu... [more]
K1QZI9_CRAGI7.890e-2164.00ATP-dependent RNA helicase DHX8 n=1 Tax=Crassostre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10104contigS-dermatodea_contig10104:6285..6706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size424
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924139.121854-CDS-S-dermatodea_contig10104:6284..67041622924139.121854-CDS-S-dermatodea_contig10104:6284..6704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10104 6285..6704 +
1694079044.0821583-CDS-S-dermatodea_contig10104:6284..67041694079044.0821583-CDS-S-dermatodea_contig10104:6284..6704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10104 6285..6704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10104.73.1prot_S-dermatodea_contig10104.73.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10104 6285..6704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10104.73.1

>prot_S-dermatodea_contig10104.73.1 ID=prot_S-dermatodea_contig10104.73.1|Name=mRNA_S-dermatodea_contig10104.73.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
SPGDPRAGSTGTGGLHGHGPYDAKKVVAEGVGELGAILRQRFAEGGSFRE
VRSKVDDELCEGSVGEPEVVVQLSAHFAHEREPLELLYAARHGALGWSRC
FSDCSLFAAATTPSEPPSCCFWRRYNLTPASPGAPLCSPP
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mRNA from alignment at S-dermatodea_contig10104:6285..6706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10104.73.1 ID=mRNA_S-dermatodea_contig10104.73.1|Name=mRNA_S-dermatodea_contig10104.73.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=422bp|location=Sequence derived from alignment at S-dermatodea_contig10104:6285..6706+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCCCGGCGACCCCCGCGCCGGCTCGACCGGAACCGGCGGGCTTCATGG CCATGGCCCCTATGATGCGAAGAAGGTTGTCGCAGAGGGAGTCGGGGAAC TCGGCGCCATTCTCCGACAGCGCTTTGCGGAAGGCGGGAGCTTCCGGGAA GTCCGCAGCAAGGTGGATGATGAACTCTGCGAGGGTTCTGTCGGAGAGCC CGAGGTGGTTGTCCAGCTCAGTGCACACTTTGCTCACGAGCGAGAGCCTC TGGAGCTCCTCTATGCTGCTCGCCATGGCGCCCTTGGGTGGTCTCGCTGT TTTTCAGACTGCTCACTATTCGCTGCTGCTACCACACCATCCGAGCCACC TTCCTGCTGCTTCTGGCGTCGATATAATTTGACACCCGCCTCTCCAGGCG CTCCTCTCTGTTCCCCTCCACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10104:6285..6706+

>mRNA_S-dermatodea_contig10104.73.1 ID=mRNA_S-dermatodea_contig10104.73.1|Name=mRNA_S-dermatodea_contig10104.73.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig10104:6285..6706+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCCCGGCGACCCCCGCGCCGGCTCGACCGGAACCGGCGGGCTTCATGG
CCATGGCCCCTATGATGCGAAGAAGGTTGTCGCAGAGGGAGTCGGGGAAC
TCGGCGCCATTCTCCGACAGCGCTTTGCGGAAGGCGGGAGCTTCCGGGAA
GTCCGCAGCAAGGTGGATGATGAACTCTGCGAGGGTTCTGTCGGAGAGCC
CGAGGTGGTTGTCCAGCTCAGTGCACACTTTGCTCACGAGCGAGAGCCTC
TGGAGCTCCTCTATGCTGCTCGCCATGGCGCCCTTGGGTGGTCTCGCTGT
TTTTCAGACTGCTCACTATTCGCTGCTGCTACCACACCATCCGAGCCACC
TTCCTGCTGCTTCTGGCGTCGATATAATTTGACACCCGCCTCTCCAGGCG
CTCCTCTCTGTTCCCCTCCAAGCCCCGGCGACCCCCGCGCCGGCTCGACC
GGAACCGGCGGGCTTCATGGCCATGGCCCCTATGATGCGAAGAAGGTTGT
CGCAGAGGGAGTCGGGGAACTCGGCGCCATTCTCCGACAGCGCTTTGCGG
AAGGCGGGAGCTTCCGGGAAGTCCGCAGCAAGGTGGATGATGAACTCTGC
GAGGGTTCTGTCGGAGAGCCCGAGGTGGTTGTCCAGCTCAGTGCACACTT
TGCTCACGAGCGAGAGCCTCTGGAGCTCCTCTATGCTGCTCGCCATGGCG
CCCTTGGGTGGTCTCGCTGTTTTTCAGACTGCTCACTATTCGCTGCTGCT
ACCACACCATCCGAGCCACCTTCCTGCTGCTTCTGGCGTCGATATAATTT
GACACCCGCCTCTCCAGGCGCTCCTCTCTGTTCCCCTCCA
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