mRNA_S-dermatodea_contig10104.73.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI) HSP 1 Score: 135 bits (339), Expect = 4.960e-34 Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = -1
Query: 13 MASSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMA-MKPAGSGRAGAG 276
++SSI+ELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLA +FP+ AFR+ALSENGAEFPDSL DNLLRIIGAM K A +GRAG G
Sbjct: 2 VSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPDPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKGASAGRAGGG 90
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE) HSP 1 Score: 135 bits (339), Expect = 5.070e-34 Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = -1
Query: 13 MASSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMA-MKPAGSGRAGAG 276
++SSI+ELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLA +FPE AFR+ALSENGAEFPDSL DNLLRIIGAM K A +GR G G
Sbjct: 2 VSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKAASAGRGGVG 90
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.990e-30 Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = -1
Query: 22 SSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGSGRA 270
S ++ELQRL+L+SKVCTELDNHLGLSDRTLAEFIIHLAA+FPE AFR AL+ENGAEFP +LCDNLLRII M+ G+G A
Sbjct: 2 SELDELQRLALISKVCTELDNHLGLSDRTLAEFIIHLAAEFPEPAAFRSALAENGAEFPGALCDNLLRIIKLMSGDGGGAGSA 84
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: W7TCI3_9STRA (Atp-dependent rna helicase dhx8 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCI3_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 2.650e-23 Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = -1
Query: 52 SSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAM 270
+++++LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA +A +FR AL ENGAEFP + CD L +I AM
Sbjct: 2 AALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAM 74
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A7S2RRS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRS8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.470e-22 Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = -1
Query: 13 SIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGSGRAGAG 267
++E+L L LVSKVCTELDNHLGLSD+TLAEFIIHLA A F LS NGAEFP +L ++L R+I MKP G++GAG
Sbjct: 1 TMEDLLHLQLVSKVCTELDNHLGLSDKTLAEFIIHLADGVSSATGFEAKLSANGAEFPTALAESLFRLI--QQMKPKAGGKSGAG 83
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: UPI001C4BCA0F (ATP-dependent RNA helicase DHX8-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4BCA0F) HSP 1 Score: 91.7 bits (226), Expect = 1.240e-21 Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = -1
Query: 31 MASSIEELQRL---SLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGS 276
MA++++E++RL SLVSKVCTEL+NHLG+S++ LAEFII+LA P F+ AL ENGAEF D+L NLLR+I M +P+ S
Sbjct: 1 MAAALDEIKRLEYLSLVSKVCTELENHLGISEKDLAEFIINLAEKHPTFETFKAALGENGAEFTDTLIGNLLRLIQTMRPRPSTS 85
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A4D9CSB1_9STRA (HA2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSB1_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.420e-21 Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = -1
Query: 52 GAMASSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAM 282
G MA+ +++LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA +A +FR AL ENGAEFP + CD L +I AM
Sbjct: 7 GTMAA-LDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAM 82
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A7R8YMD4_HERIL (RNA helicase n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8YMD4_HERIL) HSP 1 Score: 98.6 bits (244), Expect = 3.140e-21 Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = -1
Query: 10 IEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAGSGRAGAGV 264
+E+L+ LSLVSK+CTELDNHLGL+D+ LAEFII LA AF+KAL ENGAEFPDS NLLRII MKP G G+ + V
Sbjct: 4 LEKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLANKSGTFEAFKKALIENGAEFPDSFISNLLRII--QLMKPTGKGKVSSSV 86
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: A0A182S737_9DIPT (Uncharacterized protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182S737_9DIPT) HSP 1 Score: 93.6 bits (231), Expect = 7.330e-21 Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = -1
Query: 34 SSIEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKPAG 270
+ +E+L+ LSLVSK+CTEL+NHLGL+D+ LAEFII LA P AF++ L ENGAEF DS NLLRII MKPAG
Sbjct: 2 NELEQLEHLSLVSKICTELENHLGLNDKDLAEFIIDLAHKNPTIEAFKRVLVENGAEFSDSFTTNLLRII--QLMKPAG 78
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Match: K1QZI9_CRAGI (ATP-dependent RNA helicase DHX8 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QZI9_CRAGI) HSP 1 Score: 92.8 bits (229), Expect = 7.890e-21 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = -1
Query: 40 IEELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLAADFPEAPAFRKALSENGAEFPDSLCDNLLRIIGAMAMKP 264
+++L+ LSLVSKVCTEL+NHLGL+D+ LAEFIIHLA F+KAL ENGAEF DSL NLLR+I M KP
Sbjct: 4 LQKLEYLSLVSKVCTELENHLGLNDKDLAEFIIHLAEKNDTFEKFKKALDENGAEFADSLVANLLRLIQKMKPKP 78 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10104.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10104.73.1 >prot_S-dermatodea_contig10104.73.1 ID=prot_S-dermatodea_contig10104.73.1|Name=mRNA_S-dermatodea_contig10104.73.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp SPGDPRAGSTGTGGLHGHGPYDAKKVVAEGVGELGAILRQRFAEGGSFREback to top mRNA from alignment at S-dermatodea_contig10104:6285..6706+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10104.73.1 ID=mRNA_S-dermatodea_contig10104.73.1|Name=mRNA_S-dermatodea_contig10104.73.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=422bp|location=Sequence derived from alignment at S-dermatodea_contig10104:6285..6706+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10104:6285..6706+ >mRNA_S-dermatodea_contig10104.73.1 ID=mRNA_S-dermatodea_contig10104.73.1|Name=mRNA_S-dermatodea_contig10104.73.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig10104:6285..6706+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |