mRNA_S-dermatodea_contig10101.70.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10101.70.1
Unique NamemRNA_S-dermatodea_contig10101.70.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10101.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10101contigS-dermatodea_contig10101:5863..6264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog2880.D8LIR6
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size403
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924139.037795-CDS-S-dermatodea_contig10101:5862..62641622924139.037795-CDS-S-dermatodea_contig10101:5862..6264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10101 5863..6264 +
1694079044.0431445-CDS-S-dermatodea_contig10101:5862..62641694079044.0431445-CDS-S-dermatodea_contig10101:5862..6264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10101 5863..6264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10101.70.1prot_S-dermatodea_contig10101.70.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10101 5863..6264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10101.70.1

>prot_S-dermatodea_contig10101.70.1 ID=prot_S-dermatodea_contig10101.70.1|Name=mRNA_S-dermatodea_contig10101.70.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
MAGERAQKATARALANLGLEVEGQVDLDPARLLLPPKRRNAPPPRRAPQD
AKEAARTALSLNLKLQAALREELGKVDCALAENRGVLTEVKRRLSRKRAA
TITTSSEKLVWVRGVDKFFAAGAHPMKLGQRVER
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mRNA from alignment at S-dermatodea_contig10101:5863..6264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10101.70.1 ID=mRNA_S-dermatodea_contig10101.70.1|Name=mRNA_S-dermatodea_contig10101.70.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig10101:5863..6264+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTGGCGAGCGCGCCCAGAAGGCAACCGCGAGAGCCCTCGCGAATCT
CGGTCTCGAGGTGGAGGGACAAGTCGACCTTGACCCTGCCCGCTTGCTCC
TTCCCCCAAAGCGCCGCAACGCACCCCCTCCGAGACGGGCACCACAGGAC
GCGAAAGAGGCAGCGAGGACAGCCCTCTCTCTCAACCTCAAGCTCCAGGC
GGCGCTGAGAGAGGAGCTCGGCAAGGTGGACTGCGCGCTGGCTGAGAATC
GCGGGGTGTTGACGGAGGTCAAGAGGCGGCTGTCGCGCAAGCGGGCCGCT
ACGATAACCACGAGCAGTGAGAAGCTCGTTTGGGTTCGAGGGGTGGACAA
GTTCTTCGCTGCCGGGGCGCATCCCATGAAGCTGGGGCAGCGCGTGGAGC
GA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10101:5863..6264+

>mRNA_S-dermatodea_contig10101.70.1 ID=mRNA_S-dermatodea_contig10101.70.1|Name=mRNA_S-dermatodea_contig10101.70.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig10101:5863..6264+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTGGCGAGCGCGCCCAGAAGGCAACCGCGAGAGCCCTCGCGAATCT
CGGTCTCGAGGTGGAGGGACAAGTCGACCTTGACCCTGCCCGCTTGCTCC
TTCCCCCAAAGCGCCGCAACGCACCCCCTCCGAGACGGGCACCACAGGAC
GCGAAAGAGGCAGCGAGGACAGCCCTCTCTCTCAACCTCAAGCTCCAGGC
GGCGCTGAGAGAGGAGCTCGGCAAGGTGGACTGCGCGCTGGCTGAGAATC
GCGGGGTGTTGACGGAGGTCAAGAGGCGGCTGTCGCGCAAGCGGGCCGCT
ACGATAACCACGAGCAGTGAGAAGCTCGTTTGGGTTCGAGGGGTGGACAA
GTTCTTCGCTGCCGGGGCGCATCCCATGAAGCTGGGGCAGCGCGTGGAGC
GAATGGCTGGCGAGCGCGCCCAGAAGGCAACCGCGAGAGCCCTCGCGAAT
CTCGGTCTCGAGGTGGAGGGACAAGTCGACCTTGACCCTGCCCGCTTGCT
CCTTCCCCCAAAGCGCCGCAACGCACCCCCTCCGAGACGGGCACCACAGG
ACGCGAAAGAGGCAGCGAGGACAGCCCTCTCTCTCAACCTCAAGCTCCAG
GCGGCGCTGAGAGAGGAGCTCGGCAAGGTGGACTGCGCGCTGGCTGAGAA
TCGCGGGGTGTTGACGGAGGTCAAGAGGCGGCTGTCGCGCAAGCGGGCCG
CTACGATAACCACGAGCAGTGAGAAGCTCGTTTGGGTTCGAGGGGTGGAC
AAGTTCTTCGCTGCCGGGGCGCATCCCATGAAGCTGGGGCAGCGCGTGGA
GCGA
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