mRNA_S-dermatodea_contig1010.69.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1010.69.1
Unique NamemRNA_S-dermatodea_contig1010.69.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1010.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1010contigS-dermatodea_contig1010:22409..22766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.9291341-UTR-S-dermatodea_contig1010:22408..224391622924138.9291341-UTR-S-dermatodea_contig1010:22408..22439Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1010 22409..22439 +
1694079043.9635873-UTR-S-dermatodea_contig1010:22408..224391694079043.9635873-UTR-S-dermatodea_contig1010:22408..22439Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1010 22409..22439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.941024-CDS-S-dermatodea_contig1010:22439..227661622924138.941024-CDS-S-dermatodea_contig1010:22439..22766Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1010 22440..22766 +
1694079043.9725285-CDS-S-dermatodea_contig1010:22439..227661694079043.9725285-CDS-S-dermatodea_contig1010:22439..22766Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1010 22440..22766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1010.69.1prot_S-dermatodea_contig1010.69.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1010 22440..22766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1010.69.1

>prot_S-dermatodea_contig1010.69.1 ID=prot_S-dermatodea_contig1010.69.1|Name=mRNA_S-dermatodea_contig1010.69.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MGAHRHHNGRRQKINNSRRRGSKNLETASSENGSWETESVSTTCAEQHLD
EADELNALEPLEPMASLGSGSGGGKGESEGEGGGEGGGRGCEYGNGTVGD
SLARGTLVG
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mRNA from alignment at S-dermatodea_contig1010:22409..22766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1010.69.1 ID=mRNA_S-dermatodea_contig1010.69.1|Name=mRNA_S-dermatodea_contig1010.69.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=358bp|location=Sequence derived from alignment at S-dermatodea_contig1010:22409..22766+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCACGCGGCGGCTTGGCTGAGAACTGACCTATGGGCGCCCATCGACACC
ACAACGGCCGTCGACAAAAAATCAACAACAGCAGGAGACGAGGCAGCAAG
AACTTGGAGACGGCCTCATCAGAGAATGGTTCCTGGGAAACAGAGTCAGT
GAGCACCACTTGTGCGGAGCAACACTTGGACGAAGCCGACGAGCTGAACG
CGCTTGAGCCGCTCGAGCCAATGGCATCGTTGGGCAGCGGCAGCGGCGGC
GGCAAAGGCGAAAGCGAAGGCGAAGGTGGTGGCGAAGGTGGTGGTAGGGG
TTGTGAATATGGTAATGGTACTGTTGGCGACAGCCTTGCTCGTGGCACCT
TGGTTGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1010:22409..22766+

>mRNA_S-dermatodea_contig1010.69.1 ID=mRNA_S-dermatodea_contig1010.69.1|Name=mRNA_S-dermatodea_contig1010.69.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig1010:22409..22766+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGCCCATCGACACCACAACGGCCGTCGACAAAAAATCAACAACAG
CAGGAGACGAGGCAGCAAGAACTTGGAGACGGCCTCATCAGAGAATGGTT
CCTGGGAAACAGAGTCAGTGAGCACCACTTGTGCGGAGCAACACTTGGAC
GAAGCCGACGAGCTGAACGCGCTTGAGCCGCTCGAGCCAATGGCATCGTT
GGGCAGCGGCAGCGGCGGCGGCAAAGGCGAAAGCGAAGGCGAAGGTGGTG
GCGAAGGTGGTGGTAGGGGTTGTGAATATGGTAATGGTACTGTTGGCGAC
AGCCTTGCTCGTGGCACCTTGGTTGGCATGGGCGCCCATCGACACCACAA
CGGCCGTCGACAAAAAATCAACAACAGCAGGAGACGAGGCAGCAAGAACT
TGGAGACGGCCTCATCAGAGAATGGTTCCTGGGAAACAGAGTCAGTGAGC
ACCACTTGTGCGGAGCAACACTTGGACGAAGCCGACGAGCTGAACGCGCT
TGAGCCGCTCGAGCCAATGGCATCGTTGGGCAGCGGCAGCGGCGGCGGCA
AAGGCGAAAGCGAAGGCGAAGGTGGTGGCGAAGGTGGTGGTAGGGGTTGT
GAATATGGTAATGGTACTGTTGGCGACAGCCTTGCTCGTGGCACCTTGGT
TGGC
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