mRNA_S-dermatodea_contig10097.64.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Match: D7FPM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM8_ECTSI) HSP 1 Score: 243 bits (620), Expect = 9.040e-72 Identity = 116/134 (86.57%), Postives = 126/134 (94.03%), Query Frame = 2
Query: 329 RAFSSYDWKNMSKYAQEANKEFSKLTPEEVRKAGEDEVDKVEKALKAMVPFNDVFTVRREGLEVFAELGPQVGTYWIKFDLSIQQICMMSPRSGPHRYIYDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPEF 730
RA SSY+WKNMS AQ+ANKEF +L+ EE+RKAGE+EVDKVEKALKAM PFNDVF VRREGLEVFAELGP+VGTYWIKFDLSI QIC+MSPRSGPHRYI+DKGSGRWIGEADKHDFQGMLTRDIIQSACGIP+F
Sbjct: 102 RAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPDF 235
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Match: A0A835Z714_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z714_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.340e-18 Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 2
Query: 437 EVDKVEKALKAMVPFNDVFTVRREGLEVFAELGPQVGTYWIKFDLSIQQICMMSPRSGPHRYIYDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPEF 730
E+++V A+ M N +F V +V +LGP++GTY I+F ++ + + SPRSG Y+YD+ + +W+G D HDF+GMLTRD+IQ A G P+F
Sbjct: 13 EMERVVAAVDRMKEDNAIFEVIHADGKVSIDLGPKIGTYQIRFVHDLRVLQLSSPRSGGFMYVYDEKTRKWLGREDAHDFEGMLTRDLIQQANGYPDF 110
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Match: A0A067C8U5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8U5_SAPPC) HSP 1 Score: 67.4 bits (163), Expect = 1.330e-9 Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = 2
Query: 401 LTPEEVRKAGEDEVDKVEKALKAMVP-FNDVFTVRREGLEVFAELGPQVGTYWIKFDLSI----QQICMMSPRSGPHRYIYDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPEF 730
LTP++ + +DKVE A+ ++P N+ F V+R +L Q T+ +F++++ Q I SP SG YIY+ + RW E D+HD +G+LTRD++++ GIP F
Sbjct: 32 LTPDKFKSLSLAFLDKVEAAVAPLLPPVNETFVVQRTATP--PKLVLQTATH--EFEIAVLAKPQTIEFTSPISGLRTYIYNGKTQRWEDETDRHDVEGLLTRDLMRTCTGIPTF 142
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Match: A0A225UL20_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UL20_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 5.510e-9 Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 2
Query: 476 PFNDVFTVRREGLEVFAELGPQVGTYWIKFDLSIQQICMMSPRSGPHRYIYDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPEF 730
P ND F ++R EV + + IK S QQI SP SG H Y ++ + RW EAD HD +G+LTRD+++ GIP F
Sbjct: 7 PINDDFQLQRVDAEVVIRTNTK--EFVIKVLPSKQQIEFSSPVSGLHTYQWNAMAKRWEDEADSHDIEGLLTRDLMRFCAGIPLF 89
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Match: A0A0N7L4E5_PLAHL (Mitochondrial matrix protein frataxin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4E5_PLAHL) HSP 1 Score: 65.5 bits (158), Expect = 1.100e-8 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 2
Query: 440 VDKVEKALKAMVP-FNDVFTVRREGLEVFAELGPQVGTYWIKFDLSIQQICMMSPRSGPHRYIYDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPEF 730
+D+V+ A++ + P ND F ++R+ E++ + + +K S QQI SP SG Y ++ + RW EAD HD +G+LTRD+++ GIP F
Sbjct: 72 LDRVQNAMEPLYPPINDEFQLKRDDGEIYIRTNAR--EFVVKVLHSKQQIEFSSPVSGLRSYQWNVLTKRWEDEADSHDIEGLLTRDLMRFCVGIPRF 167
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Match: H3H0V7_PHYRM (WW domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0V7_PHYRM) HSP 1 Score: 62.4 bits (150), Expect = 1.870e-6 Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query: 440 VDKVEKALKAM-VPFNDVFTVRREGLEVFAELGPQVGT--YWIKFDLSIQQICMMSPRSGPHRYIYDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPEF 730
+D+V+ A++ + P N+ F ++REG EL + T + IK S QQI SP SG Y ++ + RW EAD HD +G+LTRD+++ GIP F
Sbjct: 351 LDRVQTAMEPLHPPINEEFQLQREGN---GELVIRTNTKEFVIKVLSSKQQIEFSSPVSGLRTYQWNAITKRWEDEADSHDIEGLLTRDLMRFCAGIPLF 447 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10097.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10097.64.1 >prot_S-dermatodea_contig10097.64.1 ID=prot_S-dermatodea_contig10097.64.1|Name=mRNA_S-dermatodea_contig10097.64.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=209bp MISCCAKSGVFRGATQRWLLPSCTDLLRKGLAPCSSVPSSSRYRLSTVATback to top mRNA from alignment at S-dermatodea_contig10097:4801..8274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10097.64.1 ID=mRNA_S-dermatodea_contig10097.64.1|Name=mRNA_S-dermatodea_contig10097.64.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3474bp|location=Sequence derived from alignment at S-dermatodea_contig10097:4801..8274+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10097:4801..8274+ >mRNA_S-dermatodea_contig10097.64.1 ID=mRNA_S-dermatodea_contig10097.64.1|Name=mRNA_S-dermatodea_contig10097.64.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at S-dermatodea_contig10097:4801..8274+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |